Wall clock time and date at job start Wed Apr 1 2020 04:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46899 * 109.46818 * 230.73225 * 3 2 1 5 5 C 1.46853 * 110.99477 * 170.00396 * 4 3 2 6 6 C 1.53038 * 109.52148 * 185.84123 * 5 4 3 7 7 C 1.53123 * 109.27881 * 300.81983 * 6 5 4 8 8 C 1.50700 * 109.52378 * 177.55835 * 7 6 5 9 9 O 1.21283 * 119.99803 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99675 * 180.27781 * 8 7 6 11 11 C 1.46497 * 119.99525 * 179.72583 * 10 8 7 12 12 H 1.08998 * 112.89218 * 336.34556 * 11 10 8 13 13 C 1.53955 * 113.66485 * 107.81233 * 11 10 8 14 14 C 1.53950 * 87.29825 * 89.73343 * 13 11 10 15 15 H 1.09000 * 113.66153 * 139.20036 * 14 13 11 16 16 N 1.46497 * 113.75112 * 270.25450 * 14 13 11 17 17 C 1.36932 * 120.00104 * 252.22930 * 16 14 13 18 18 H 1.08009 * 120.00169 * 359.97438 * 17 16 14 19 19 C 1.38816 * 120.00520 * 179.97438 * 17 16 14 20 20 N 1.31620 * 119.99352 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00243 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47279 * 59.99570 * 21 19 17 23 23 H 1.48499 * 109.46913 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46885 * 299.99628 * 21 19 17 25 25 C 1.52909 * 113.66115 * 204.99371 * 11 10 8 26 26 C 1.52912 * 121.13510 * 144.70591 * 25 11 10 27 27 C 1.53947 * 86.78509 * 209.38321 * 26 25 11 28 28 C 1.52916 * 121.13473 * 36.15070 * 25 11 10 29 29 C 1.53120 * 109.15993 * 57.65189 * 7 6 5 30 30 C 1.46840 * 111.00167 * 294.21091 * 4 3 2 31 31 H 4.40883 * 5.52242 * 180.02562 * 4 1 2 32 32 H 1.08998 * 109.46655 * 110.73718 * 3 2 1 33 33 H 1.09002 * 109.47442 * 350.73557 * 3 2 1 34 34 H 1.08996 * 109.46218 * 65.82499 * 5 4 3 35 35 H 1.09002 * 109.45731 * 305.84571 * 5 4 3 36 36 H 1.09000 * 109.50674 * 180.87805 * 6 5 4 37 37 H 1.09000 * 109.53748 * 60.77787 * 6 5 4 38 38 H 1.08997 * 109.52129 * 297.68605 * 7 6 5 39 39 H 0.97000 * 119.99894 * 359.71837 * 10 8 7 40 40 H 1.08991 * 113.58241 * 204.34163 * 13 11 10 41 41 H 1.09003 * 113.57379 * 335.13145 * 13 11 10 42 42 H 0.96998 * 120.00420 * 72.22251 * 16 14 13 43 43 H 0.97000 * 119.99675 * 179.97438 * 20 19 17 44 44 H 1.09004 * 113.66499 * 323.85857 * 26 25 11 45 45 H 1.08999 * 113.66010 * 94.91568 * 26 25 11 46 46 H 1.08999 * 113.58069 * 270.13638 * 27 26 25 47 47 H 1.08997 * 113.65513 * 139.34732 * 27 26 25 48 48 H 1.08999 * 113.65700 * 265.08473 * 28 25 11 49 49 H 1.08997 * 113.66089 * 36.05622 * 28 25 11 50 50 H 1.09002 * 109.50176 * 62.28639 * 29 7 6 51 51 H 1.08994 * 109.50532 * 182.40534 * 29 7 6 52 52 H 1.09000 * 109.46665 * 294.17456 * 30 4 3 53 53 H 1.08994 * 109.46259 * 54.15922 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1352 0.8775 1.0723 5 6 4.5837 0.7231 1.2586 6 6 5.0328 1.5381 2.4735 7 6 4.6822 3.0119 2.2513 8 6 5.0678 3.8106 3.4697 9 8 5.5729 3.2566 4.4230 10 7 4.8456 5.1396 3.5023 11 6 5.2149 5.9150 4.6891 12 1 5.2651 5.3083 5.5932 13 6 6.4442 6.8178 4.4794 14 6 5.4681 7.9166 4.0212 15 1 5.7218 8.9096 4.3924 16 7 5.1933 7.8992 2.5824 17 6 5.7133 8.8745 1.7741 18 1 6.3258 9.6570 2.1974 19 6 5.4533 8.8578 0.4106 20 7 4.7074 7.9039 -0.1054 21 14 6.1622 10.1887 -0.6919 22 1 7.6446 10.1627 -0.6089 23 1 5.7400 9.9462 -2.0948 24 1 5.6647 11.5158 -0.2482 25 6 4.4062 7.2017 4.8575 26 6 4.0150 7.7138 6.2442 27 6 2.7767 8.3330 5.5710 28 6 2.9267 7.2614 4.4757 29 6 3.1752 3.1394 2.0116 30 6 2.7799 2.2780 0.8101 31 1 -1.0502 -0.0003 -0.0001 32 1 3.0091 0.3647 -0.9611 33 1 3.0099 -1.0134 0.1654 34 1 5.1042 1.0794 0.3697 35 1 4.8188 -0.3290 1.4200 36 1 6.1103 1.4357 2.6023 37 1 4.5234 1.1734 3.3656 38 1 5.2231 3.3881 1.3830 39 1 4.4412 5.5825 2.7399 40 1 6.9704 7.0594 5.4028 41 1 7.1109 6.4701 3.6903 42 1 4.6430 7.1967 2.2021 43 1 4.5254 7.8924 -1.0581 44 1 3.7770 6.9203 6.9526 45 1 4.7074 8.4517 6.6494 46 1 2.9381 9.3493 5.2116 47 1 1.8636 8.2320 6.1575 48 1 2.7499 7.6379 3.4682 49 1 2.3832 6.3402 4.6856 50 1 2.6361 2.7997 2.8960 51 1 2.9256 4.1812 1.8104 52 1 3.3090 2.6271 -0.0766 53 1 1.7052 2.3554 0.6458 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078819577.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:17 Heat of formation + Delta-G solvation = 59.343623 kcal Electronic energy + Delta-G solvation = -31545.300423 eV Core-core repulsion = 27612.171549 eV Total energy + Delta-G solvation = -3933.128874 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.03701 -40.79350 -39.28281 -36.65397 -35.53557 -35.39222 -33.85480 -32.96553 -31.83895 -31.61469 -28.43423 -26.76808 -26.37143 -25.47969 -25.00837 -24.20183 -23.75005 -21.90645 -21.32546 -20.72485 -19.67488 -19.01333 -18.75191 -18.06042 -17.21411 -16.90234 -16.67205 -16.29564 -16.18259 -16.11553 -15.75232 -15.56210 -15.49015 -14.90762 -14.76334 -14.58592 -14.20947 -14.03394 -13.76706 -13.69016 -13.43591 -13.26007 -13.12361 -12.99824 -12.80169 -12.67426 -12.52837 -12.49998 -12.21447 -12.19348 -11.92792 -11.82178 -11.82045 -11.54139 -11.30877 -11.27307 -11.15203 -11.03857 -10.87417 -10.68045 -10.61251 -9.83125 -9.37037 -8.99380 -7.95084 -5.21821 1.48901 1.49560 1.55363 1.61632 1.77273 1.95518 2.16941 2.56015 3.05771 3.37577 3.41192 3.52796 3.54133 3.70527 3.73746 3.81842 3.85538 3.97595 4.03344 4.16233 4.18757 4.21867 4.29573 4.35031 4.40737 4.52126 4.56177 4.58480 4.65794 4.67131 4.72646 4.81482 4.86409 4.87484 4.90318 4.92196 4.99465 5.05859 5.10633 5.12841 5.13578 5.15637 5.21670 5.26207 5.33004 5.53058 5.59929 5.62802 5.72682 5.98660 6.05509 6.28139 6.56777 6.74102 7.23042 7.35518 8.07963 8.32711 9.27436 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008600 B = 0.003439 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.029567 B = 8140.490622 C = 9691.269527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.212 4.212 3 C 0.160 3.840 4 N -0.544 5.544 5 C 0.061 3.939 6 C -0.086 4.086 7 C -0.105 4.105 8 C 0.520 3.480 9 O -0.580 6.580 10 N -0.697 5.697 11 C 0.137 3.863 12 H 0.092 0.908 13 C -0.178 4.178 14 C 0.178 3.822 15 H 0.063 0.937 16 N -0.707 5.707 17 C -0.244 4.244 18 H 0.073 0.927 19 C -0.062 4.062 20 N -0.960 5.960 21 Si 0.966 3.034 22 H -0.284 1.284 23 H -0.296 1.296 24 H -0.280 1.280 25 C -0.120 4.120 26 C -0.094 4.094 27 C -0.127 4.127 28 C -0.126 4.126 29 C -0.097 4.097 30 C 0.063 3.937 31 H 0.242 0.758 32 H 0.065 0.935 33 H 0.115 0.885 34 H 0.044 0.956 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.402 0.598 40 H 0.101 0.899 41 H 0.042 0.958 42 H 0.375 0.625 43 H 0.252 0.748 44 H 0.098 0.902 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.083 0.917 48 H 0.048 0.952 49 H 0.082 0.918 50 H 0.070 0.930 51 H 0.069 0.931 52 H 0.038 0.962 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.755 -12.329 5.471 14.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.213 4.213 3 C 0.034 3.966 4 N -0.269 5.269 5 C -0.066 4.066 6 C -0.125 4.125 7 C -0.126 4.126 8 C 0.307 3.693 9 O -0.460 6.460 10 N -0.347 5.347 11 C 0.032 3.968 12 H 0.110 0.890 13 C -0.220 4.220 14 C 0.067 3.933 15 H 0.082 0.918 16 N -0.347 5.347 17 C -0.376 4.376 18 H 0.091 0.909 19 C -0.255 4.255 20 N -0.610 5.610 21 Si 0.795 3.205 22 H -0.210 1.210 23 H -0.223 1.223 24 H -0.207 1.207 25 C -0.122 4.122 26 C -0.132 4.132 27 C -0.164 4.164 28 C -0.164 4.164 29 C -0.135 4.135 30 C -0.064 4.064 31 H 0.259 0.741 32 H 0.083 0.917 33 H 0.133 0.867 34 H 0.062 0.938 35 H 0.120 0.880 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.240 0.760 40 H 0.120 0.880 41 H 0.061 0.939 42 H 0.209 0.791 43 H 0.060 0.940 44 H 0.116 0.884 45 H 0.099 0.901 46 H 0.089 0.911 47 H 0.101 0.899 48 H 0.066 0.934 49 H 0.100 0.900 50 H 0.089 0.911 51 H 0.088 0.912 52 H 0.056 0.944 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.513 -12.679 6.472 15.266 hybrid contribution 0.424 1.092 -2.223 2.512 sum -5.089 -11.587 4.249 13.350 Atomic orbital electron populations 1.25670 0.96844 0.99496 0.99463 1.23321 0.95089 1.01540 1.01335 1.19091 0.84907 0.99086 0.93522 1.61908 1.14749 1.06364 1.43929 1.22139 0.86020 1.01567 0.96911 1.21314 1.01276 0.91157 0.98718 1.21401 0.98672 0.96914 0.95636 1.20988 0.76977 0.82189 0.89112 1.90615 1.45736 1.71054 1.38607 1.45849 1.62265 1.07557 1.19014 1.21648 0.95873 0.91087 0.88238 0.89048 1.24204 0.97257 0.99286 1.01257 1.21058 0.92803 0.95843 0.83611 0.91846 1.42159 1.60002 1.30784 1.01751 1.19552 1.24326 1.04115 0.89600 0.90881 1.25362 1.01444 1.00706 0.98025 1.69736 1.43719 1.35610 1.11946 0.85337 0.77925 0.79347 0.77849 1.20999 1.22259 1.20661 1.23445 0.94524 0.95054 0.99223 1.22537 0.97262 1.00308 0.93062 1.22705 0.98715 0.97894 0.97119 1.22553 0.95135 0.99580 0.99143 1.21458 0.92737 1.00006 0.99293 1.21994 1.01027 0.87359 0.96064 0.74129 0.91733 0.86683 0.93788 0.88013 0.90938 0.91491 0.88865 0.76044 0.88040 0.93942 0.79075 0.93950 0.88373 0.90146 0.91096 0.89868 0.93360 0.89955 0.91145 0.91215 0.94382 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.58 19.25 74.32 1.43 -2.14 16 2 C -0.21 -4.40 12.34 31.13 0.38 -4.02 16 3 C 0.16 2.90 5.46 84.50 0.46 3.36 16 4 N -0.54 -11.71 4.63 -907.47 -4.21 -15.91 16 5 C 0.06 1.20 5.46 86.33 0.47 1.67 16 6 C -0.09 -2.15 4.68 30.65 0.14 -2.01 16 7 C -0.10 -2.99 2.59 -11.46 -0.03 -3.02 16 8 C 0.52 17.88 7.16 87.66 0.63 18.51 16 9 O -0.58 -22.75 15.58 -3.04 -0.05 -22.80 16 10 N -0.70 -24.19 4.83 -441.15 -2.13 -26.32 16 11 C 0.14 4.57 4.12 45.28 0.19 4.76 16 12 H 0.09 3.06 7.46 -2.39 -0.02 3.04 16 13 C -0.18 -6.29 7.69 31.23 0.24 -6.05 16 14 C 0.18 6.71 4.36 45.28 0.20 6.91 16 15 H 0.06 2.40 8.10 -2.39 -0.02 2.38 16 16 N -0.71 -33.01 4.74 -321.56 -1.52 -34.53 16 17 C -0.24 -12.86 9.97 84.04 0.84 -12.02 16 18 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 19 C -0.06 -3.37 5.50 84.86 0.47 -2.91 16 20 N -0.96 -54.49 13.06 21.65 0.28 -54.21 16 21 Si 0.97 44.47 29.55 68.60 2.03 46.50 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 25 C -0.12 -3.70 0.78 -52.31 -0.04 -3.74 16 26 C -0.09 -2.24 7.84 30.88 0.24 -1.99 16 27 C -0.13 -3.20 8.08 31.23 0.25 -2.94 16 28 C -0.13 -3.84 7.27 30.89 0.22 -3.62 16 29 C -0.10 -2.56 5.25 30.65 0.16 -2.40 16 30 C 0.06 1.52 5.30 86.33 0.46 1.97 16 31 H 0.24 2.61 7.80 -4.41 -0.03 2.57 16 32 H 0.06 1.08 8.12 -2.39 -0.02 1.06 16 33 H 0.12 1.61 7.99 -2.39 -0.02 1.60 16 34 H 0.04 0.83 8.14 -2.39 -0.02 0.82 16 35 H 0.10 1.57 8.02 -2.39 -0.02 1.55 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.07 1.84 8.04 -2.39 -0.02 1.82 16 38 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.40 14.95 5.62 -92.71 -0.52 14.43 16 40 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 41 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.37 18.11 5.14 -92.71 -0.48 17.63 16 43 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 44 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 45 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.05 1.78 7.58 -2.39 -0.02 1.76 16 49 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 50 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 51 H 0.07 1.95 7.65 -2.39 -0.02 1.93 16 52 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 53 H 0.08 1.88 7.11 -2.39 -0.02 1.86 16 Total: -1.00 -63.81 419.30 1.01 -62.80 By element: Atomic # 1 Polarization: 54.27 SS G_CDS: -0.11 Total: 54.17 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: 6.71 Total: -9.69 kcal Atomic # 7 Polarization: -123.39 SS G_CDS: -7.58 Total: -130.97 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.05 Total: -22.80 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -63.81 1.01 -62.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078819577.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.147 kcal (2) G-P(sol) polarization free energy of solvation -63.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds