Wall clock time and date at job start Wed Apr 1 2020 04:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.46980 * 2 1 4 4 H 1.09002 * 109.47387 * 306.82722 * 3 2 1 5 5 C 1.50705 * 109.47208 * 186.82004 * 3 2 1 6 6 O 1.21278 * 120.00617 * 258.05451 * 5 3 2 7 7 N 1.34782 * 119.99538 * 78.05992 * 5 3 2 8 8 C 1.48144 * 127.83678 * 180.02562 * 7 5 3 9 9 C 1.54392 * 104.61360 * 219.58251 * 8 7 5 10 10 H 1.09001 * 110.34329 * 95.10938 * 9 8 7 11 11 C 1.50701 * 110.33655 * 217.25881 * 9 8 7 12 12 C 1.38234 * 120.00208 * 58.27770 * 11 9 8 13 13 C 1.38236 * 120.00092 * 179.78689 * 12 11 9 14 14 C 1.38239 * 119.99847 * 0.45505 * 13 12 11 15 15 C 1.38234 * 119.99945 * 359.77091 * 14 13 12 16 16 C 1.38233 * 120.00067 * 0.02562 * 15 14 13 17 17 C 1.54286 * 104.96271 * 336.12794 * 9 8 7 18 18 H 1.08993 * 110.34437 * 241.02915 * 17 9 8 19 19 N 1.46493 * 110.34055 * 118.87109 * 17 9 8 20 20 C 1.36941 * 119.99803 * 155.00517 * 19 17 9 21 21 H 1.07999 * 119.99794 * 359.97438 * 20 19 17 22 22 C 1.38808 * 119.99926 * 180.02562 * 20 19 17 23 23 N 1.31625 * 120.00179 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00335 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47244 * 90.00505 * 24 22 20 26 26 H 1.48500 * 109.47477 * 210.00957 * 24 22 20 27 27 H 1.48505 * 109.46896 * 330.00453 * 24 22 20 28 28 C 1.48143 * 127.83698 * 359.67520 * 7 5 3 29 29 N 1.46903 * 109.47238 * 66.82466 * 3 2 1 30 30 C 1.46900 * 110.99854 * 274.86944 * 29 3 2 31 31 C 1.46901 * 110.99863 * 38.82084 * 29 3 2 32 32 H 1.09001 * 109.47475 * 41.81862 * 1 2 3 33 33 H 1.09010 * 109.46901 * 161.81782 * 1 2 3 34 34 H 1.09001 * 109.47116 * 281.81852 * 1 2 3 35 35 H 1.09001 * 109.47263 * 240.00196 * 2 1 3 36 36 H 1.09003 * 109.47383 * 119.99684 * 2 1 3 37 37 H 1.08999 * 110.40383 * 338.36159 * 8 7 5 38 38 H 1.08994 * 110.41331 * 100.79531 * 8 7 5 39 39 H 1.07997 * 120.00066 * 359.97438 * 12 11 9 40 40 H 1.07997 * 120.00134 * 180.25280 * 13 12 11 41 41 H 1.08003 * 119.99496 * 179.79353 * 14 13 12 42 42 H 1.08003 * 119.99859 * 179.97438 * 15 14 13 43 43 H 1.08005 * 120.00026 * 179.97438 * 16 15 14 44 44 H 0.96999 * 120.00404 * 335.00419 * 19 17 9 45 45 H 0.96999 * 120.00309 * 179.97438 * 23 22 20 46 46 H 1.08996 * 110.40811 * 259.20101 * 28 7 5 47 47 H 1.08997 * 110.41158 * 21.63786 * 28 7 5 48 48 H 1.09001 * 109.47205 * 190.88008 * 30 29 3 49 49 H 1.09003 * 109.47114 * 70.87936 * 30 29 3 50 50 H 1.08998 * 109.46926 * 310.87829 * 30 29 3 51 51 H 1.09008 * 109.47151 * 296.04881 * 31 29 3 52 52 H 1.09003 * 109.47362 * 56.04707 * 31 29 3 53 53 H 1.08999 * 109.47124 * 176.04910 * 31 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5803 1.9904 -0.8226 5 6 3.5375 1.4459 -0.1687 6 8 4.2557 1.6238 0.7922 7 7 4.0787 1.2513 -1.3877 8 6 5.5148 1.2202 -1.7499 9 6 5.5912 1.9588 -3.1036 10 1 5.8424 3.0081 -2.9490 11 6 6.6097 1.3039 -4.0008 12 6 6.4782 -0.0305 -4.3370 13 6 7.4100 -0.6301 -5.1636 14 6 8.4784 0.1023 -5.6463 15 6 8.6125 1.4354 -5.3062 16 6 7.6784 2.0361 -4.4831 17 6 4.1786 1.8267 -3.7097 18 1 4.2215 1.2898 -4.6573 19 7 3.5811 3.1503 -3.9020 20 6 2.6106 3.3322 -4.8508 21 1 2.2859 2.4998 -5.4575 22 6 2.0448 4.5865 -5.0333 23 7 1.1115 4.7613 -5.9449 24 14 2.6069 6.0264 -3.9843 25 1 3.7400 6.7141 -4.6539 26 1 1.4823 6.9804 -3.8097 27 1 3.0451 5.5293 -2.6553 28 6 3.3725 1.0130 -2.6680 29 7 1.6892 2.0859 1.2732 30 6 0.3282 2.6368 1.2274 31 6 1.8408 1.1499 2.3953 32 1 -0.3634 0.7659 -0.6852 33 1 -0.3633 -0.9764 -0.3207 34 1 -0.3633 0.2105 1.0059 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 6.1076 1.7417 -0.9984 38 1 5.8572 0.1912 -1.8585 39 1 5.6458 -0.6038 -3.9565 40 1 7.3050 -1.6715 -5.4296 41 1 9.2082 -0.3671 -6.2893 42 1 9.4475 2.0075 -5.6829 43 1 7.7834 3.0776 -4.2170 44 1 3.8730 3.8980 -3.3573 45 1 0.7159 5.6377 -6.0722 46 1 3.3858 -0.0479 -2.9177 47 1 2.3470 1.3780 -2.6101 48 1 0.1628 3.2696 2.0993 49 1 -0.3943 1.8206 1.2284 50 1 0.2063 3.2288 0.3204 51 1 1.1346 0.3275 2.2804 52 1 2.8575 0.7569 2.4059 53 1 1.6428 1.6707 3.3321 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081134405.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:02 Heat of formation + Delta-G solvation = 11.016497 kcal Electronic energy + Delta-G solvation = -31949.933048 eV Core-core repulsion = 28014.708552 eV Total energy + Delta-G solvation = -3935.224496 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.62542 -40.48631 -39.01972 -38.07242 -35.85404 -34.08348 -33.16797 -32.96338 -31.72161 -30.25368 -29.37523 -28.77809 -28.44327 -25.84433 -24.73083 -23.83696 -23.47056 -22.56914 -22.07919 -21.19172 -20.02841 -19.54751 -18.31658 -17.88890 -17.31285 -16.88844 -16.70718 -16.31661 -16.12248 -16.06993 -15.76391 -15.43952 -15.26552 -14.82021 -14.68073 -14.56478 -14.13352 -14.06533 -13.85993 -13.67720 -13.62084 -13.45197 -13.27282 -13.11806 -13.02859 -12.85898 -12.80678 -12.60629 -12.50113 -12.44342 -12.29622 -12.23880 -12.00384 -11.81329 -11.80118 -11.76853 -11.67333 -11.09168 -10.72330 -9.88875 -9.71554 -9.61830 -9.16811 -9.15230 -8.02399 -5.34709 0.50456 0.58660 1.34859 1.37363 1.42227 1.59770 1.89368 2.45544 2.91853 3.03180 3.27128 3.41507 3.44889 3.72446 3.80270 3.87728 3.92960 3.96880 4.14409 4.20953 4.26317 4.28970 4.31622 4.35686 4.36043 4.42786 4.46378 4.56496 4.62944 4.65689 4.67331 4.69841 4.77619 4.78759 4.87890 4.93993 4.98139 5.00305 5.02318 5.07283 5.08417 5.17843 5.25878 5.31411 5.34785 5.65961 5.69986 5.76197 5.81429 5.93794 6.10347 6.19942 6.21718 6.56235 7.06063 7.18180 7.82032 7.99291 9.18436 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.007727 B = 0.004581 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3622.681034 B = 6110.863490 C = 8478.856914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.142 4.142 3 C 0.073 3.927 4 H 0.092 0.908 5 C 0.539 3.461 6 O -0.570 6.570 7 N -0.617 5.617 8 C 0.122 3.878 9 C -0.065 4.065 10 H 0.073 0.927 11 C -0.075 4.075 12 C -0.121 4.121 13 C -0.121 4.121 14 C -0.130 4.130 15 C -0.126 4.126 16 C -0.132 4.132 17 C 0.177 3.823 18 H 0.078 0.922 19 N -0.742 5.742 20 C -0.219 4.219 21 H 0.071 0.929 22 C -0.050 4.050 23 N -0.976 5.976 24 Si 0.936 3.064 25 H -0.283 1.283 26 H -0.298 1.298 27 H -0.266 1.266 28 C 0.082 3.918 29 N -0.548 5.548 30 C 0.015 3.985 31 C 0.027 3.973 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.134 0.866 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.136 0.864 43 H 0.117 0.883 44 H 0.360 0.640 45 H 0.256 0.744 46 H 0.098 0.902 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.059 0.941 50 H 0.055 0.945 51 H 0.050 0.950 52 H 0.058 0.942 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.267 -14.434 9.396 18.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.181 4.181 3 C -0.039 4.039 4 H 0.110 0.890 5 C 0.328 3.672 6 O -0.449 6.449 7 N -0.350 5.350 8 C 0.000 4.000 9 C -0.085 4.085 10 H 0.091 0.909 11 C -0.075 4.075 12 C -0.139 4.139 13 C -0.139 4.139 14 C -0.148 4.148 15 C -0.144 4.144 16 C -0.150 4.150 17 C 0.068 3.932 18 H 0.096 0.904 19 N -0.384 5.384 20 C -0.350 4.350 21 H 0.089 0.911 22 C -0.242 4.242 23 N -0.627 5.627 24 Si 0.766 3.234 25 H -0.209 1.209 26 H -0.224 1.224 27 H -0.191 1.191 28 C -0.043 4.043 29 N -0.272 5.272 30 C -0.132 4.132 31 C -0.120 4.120 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.152 0.848 40 H 0.163 0.837 41 H 0.161 0.839 42 H 0.154 0.846 43 H 0.135 0.865 44 H 0.193 0.807 45 H 0.065 0.935 46 H 0.116 0.884 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.077 0.923 50 H 0.074 0.926 51 H 0.068 0.932 52 H 0.076 0.924 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.761 -13.956 9.926 18.802 hybrid contribution -0.458 1.155 0.103 1.246 sum 7.304 -12.801 10.029 17.827 Atomic orbital electron populations 1.22001 0.93544 1.03000 1.02270 1.22077 0.97988 0.94195 1.03831 1.21684 0.91117 0.96998 0.94123 0.89012 1.20541 0.90913 0.74925 0.80805 1.90606 1.63748 1.51056 1.39474 1.49006 1.08390 1.70369 1.07274 1.22371 0.82065 1.01158 0.94453 1.21300 0.94077 0.99444 0.93709 0.90870 1.19605 0.95067 0.94603 0.98243 1.21184 0.99962 0.93954 0.98762 1.21438 0.94353 1.01040 0.97079 1.21472 0.98783 0.94268 1.00238 1.21373 0.99291 0.95867 0.97874 1.21237 0.95005 0.99962 0.98783 1.21460 0.89376 0.85910 0.96478 0.90435 1.42870 1.45793 1.07076 1.42664 1.19021 1.10919 0.95251 1.09825 0.91095 1.25225 0.99266 0.99646 1.00059 1.69831 1.31566 1.23305 1.37976 0.85697 0.77244 0.80808 0.79656 1.20931 1.22448 1.19100 1.23475 0.97608 1.00735 0.82515 1.61697 1.26811 1.36449 1.02268 1.22740 0.87674 1.00065 1.02763 1.22471 1.01476 0.94941 0.93131 0.92788 0.90747 0.91436 0.90453 0.90275 0.91313 0.88787 0.84831 0.83742 0.83897 0.84563 0.86527 0.80724 0.93466 0.88369 0.90747 0.90476 0.92269 0.92573 0.93212 0.92364 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.22 71.98 0.59 -2.13 16 2 C -0.14 -3.05 4.85 30.59 0.15 -2.91 16 3 C 0.07 2.07 1.69 44.17 0.07 2.14 16 4 H 0.09 2.88 6.42 -2.39 -0.02 2.87 16 5 C 0.54 17.97 7.10 87.66 0.62 18.59 16 6 O -0.57 -22.35 15.26 -3.02 -0.05 -22.40 16 7 N -0.62 -18.64 3.31 -807.10 -2.67 -21.31 16 8 C 0.12 3.37 6.50 86.54 0.56 3.93 16 9 C -0.07 -1.91 3.05 -10.63 -0.03 -1.94 16 10 H 0.07 2.38 7.46 -2.39 -0.02 2.37 16 11 C -0.07 -1.95 4.75 -19.86 -0.09 -2.05 16 12 C -0.12 -2.69 8.07 22.27 0.18 -2.51 16 13 C -0.12 -2.33 10.05 22.27 0.22 -2.11 16 14 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 15 C -0.13 -2.72 10.05 22.27 0.22 -2.50 16 16 C -0.13 -3.38 9.68 22.27 0.22 -3.17 16 17 C 0.18 5.98 3.12 46.05 0.14 6.13 16 18 H 0.08 2.68 7.23 -2.39 -0.02 2.66 16 19 N -0.74 -32.46 4.94 -317.96 -1.57 -34.03 16 20 C -0.22 -11.61 10.44 84.03 0.88 -10.73 16 21 H 0.07 4.03 8.06 -2.91 -0.02 4.00 16 22 C -0.05 -2.83 5.50 84.86 0.47 -2.36 16 23 N -0.98 -60.31 13.97 21.65 0.30 -60.00 16 24 Si 0.94 45.65 27.74 68.60 1.90 47.55 16 25 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 26 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 27 H -0.27 -12.32 6.52 99.48 0.65 -11.67 16 28 C 0.08 2.38 6.09 86.69 0.53 2.91 16 29 N -0.55 -15.34 4.59 -927.69 -4.26 -19.60 16 30 C 0.01 0.34 8.95 127.69 1.14 1.49 16 31 C 0.03 0.64 8.02 127.69 1.02 1.67 16 32 H 0.05 1.09 7.71 -2.39 -0.02 1.07 16 33 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.07 1.10 4.97 -2.39 -0.01 1.09 16 35 H 0.08 1.60 7.56 -2.39 -0.02 1.58 16 36 H 0.08 1.66 5.99 -2.39 -0.01 1.64 16 37 H 0.07 2.07 7.88 -2.39 -0.02 2.05 16 38 H 0.09 2.17 6.97 -2.39 -0.02 2.16 16 39 H 0.13 2.55 7.79 -2.91 -0.02 2.53 16 40 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 41 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 42 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 43 H 0.12 2.95 7.97 -2.91 -0.02 2.93 16 44 H 0.36 16.18 5.42 -92.71 -0.50 15.68 16 45 H 0.26 15.29 8.31 -92.71 -0.77 14.51 16 46 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.07 2.44 6.71 -2.39 -0.02 2.43 16 48 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.06 1.12 4.76 -2.39 -0.01 1.11 16 50 H 0.06 1.44 7.77 -2.39 -0.02 1.42 16 51 H 0.05 0.95 5.15 -2.38 -0.01 0.94 16 52 H 0.06 1.61 6.62 -2.39 -0.02 1.60 16 53 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -70.09 404.21 1.13 -68.96 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: 0.35 Total: 38.62 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 7.12 Total: 2.20 kcal Atomic # 7 Polarization: -126.74 SS G_CDS: -8.20 Total: -134.93 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.05 Total: -22.40 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.90 Total: 47.55 kcal Total: -70.09 1.13 -68.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081134405.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.978 kcal (2) G-P(sol) polarization free energy of solvation -70.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds