Wall clock time and date at job start Wed Apr 1 2020 04:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.46813 * 2 1 4 4 N 1.46496 * 109.47572 * 120.00279 * 2 1 3 5 5 C 1.46496 * 119.99973 * 305.80014 * 4 2 1 6 6 C 1.39046 * 119.99911 * 125.80091 * 4 2 1 7 7 C 1.39214 * 119.93597 * 6.25669 * 6 4 2 8 8 C 1.37609 * 120.07367 * 179.97438 * 7 6 4 9 9 C 1.39795 * 119.92779 * 359.97438 * 8 7 6 10 10 C 1.47520 * 120.06472 * 180.02562 * 9 8 7 11 11 O 1.21593 * 120.00190 * 337.66888 * 10 9 8 12 12 N 1.34784 * 119.99659 * 157.39574 * 10 9 8 13 13 C 1.46500 * 120.00094 * 355.59768 * 12 10 9 14 14 C 1.46501 * 119.99792 * 175.59222 * 12 10 9 15 15 C 1.53007 * 109.46750 * 91.40445 * 14 12 10 16 16 H 1.08998 * 112.96119 * 293.89638 * 15 14 12 17 17 C 1.53943 * 113.76998 * 65.57877 * 15 14 12 18 18 C 1.53942 * 86.29133 * 137.90436 * 17 15 14 19 19 N 1.47575 * 113.76773 * 162.22037 * 15 14 12 20 20 C 1.36939 * 134.49463 * 41.06560 * 19 15 14 21 21 H 1.08004 * 119.99702 * 4.71928 * 20 19 15 22 22 C 1.38812 * 120.00521 * 184.71657 * 20 19 15 23 23 N 1.31619 * 119.99256 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00156 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47221 * 0.02562 * 24 22 20 26 26 H 1.48511 * 109.46561 * 120.00318 * 24 22 20 27 27 H 1.48495 * 109.47293 * 240.00147 * 24 22 20 28 28 C 1.39796 * 119.86487 * 0.28030 * 9 8 7 29 29 C 1.37617 * 119.92529 * 359.43827 * 28 9 8 30 30 H 1.09002 * 109.47331 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47230 * 299.99478 * 1 2 3 32 32 H 1.08999 * 109.47497 * 59.99773 * 1 2 3 33 33 H 1.09005 * 109.47230 * 240.00522 * 2 1 3 34 34 H 1.09006 * 109.46731 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47774 * 300.00215 * 3 2 1 36 36 H 1.09004 * 109.47171 * 60.00935 * 3 2 1 37 37 H 1.08998 * 109.47306 * 270.00236 * 5 4 2 38 38 H 1.09008 * 109.47303 * 29.99923 * 5 4 2 39 39 H 1.09002 * 109.47238 * 149.99525 * 5 4 2 40 40 H 1.08006 * 119.95877 * 0.02562 * 7 6 4 41 41 H 1.08002 * 120.03417 * 180.02562 * 8 7 6 42 42 H 1.08998 * 109.47370 * 96.06647 * 13 12 10 43 43 H 1.08996 * 109.46721 * 216.07425 * 13 12 10 44 44 H 1.09008 * 109.46982 * 336.06985 * 13 12 10 45 45 H 1.08999 * 109.46963 * 211.40327 * 14 12 10 46 46 H 1.08996 * 109.47351 * 331.40667 * 14 12 10 47 47 H 1.09005 * 113.74050 * 252.25722 * 17 15 14 48 48 H 1.09008 * 113.74099 * 23.45351 * 17 15 14 49 49 H 1.09005 * 113.76391 * 90.69115 * 18 17 15 50 50 H 1.08993 * 113.77007 * 221.97860 * 18 17 15 51 51 H 0.97002 * 119.99518 * 179.97438 * 23 22 20 52 52 H 1.07991 * 120.03473 * 179.69943 * 28 9 8 53 53 H 1.07999 * 119.95885 * 180.25215 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.5629 -0.2686 2.5229 6 6 2.9143 -1.7467 1.0719 7 6 3.4468 -2.0631 -0.1748 8 6 4.3341 -3.1073 -0.3008 9 6 4.7010 -3.8505 0.8249 10 6 5.6524 -4.9703 0.6934 11 8 5.8082 -5.5123 -0.3839 12 7 6.3529 -5.3889 1.7661 13 6 6.2422 -4.6715 3.0386 14 6 7.2249 -6.5612 1.6594 15 6 8.6357 -6.1138 1.2715 16 1 8.6855 -5.6839 0.2711 17 6 9.3350 -5.2638 2.3477 18 6 10.5978 -6.0867 2.0348 19 7 9.6749 -7.1278 1.5356 20 6 9.7517 -8.4862 1.3808 21 1 8.9406 -9.0229 0.9112 22 6 10.8720 -9.1736 1.8274 23 7 11.8602 -8.5196 2.4001 24 14 10.9763 -11.0267 1.6169 25 1 9.7446 -11.5191 0.9493 26 1 12.1589 -11.3644 0.7844 27 1 11.1086 -11.6696 2.9489 28 6 4.1604 -3.5338 2.0746 29 6 3.2780 -2.4847 2.1950 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.1299 1.4425 -0.0005 35 1 1.6765 1.9565 -0.8899 36 1 1.6766 1.9564 0.8901 37 1 2.2357 0.4957 2.9119 38 1 0.5546 0.1389 2.4484 39 1 1.5593 -1.1262 3.1957 40 1 3.1639 -1.4876 -1.0439 41 1 4.7472 -3.3519 -1.2683 42 1 5.5065 -5.1669 3.6722 43 1 7.2103 -4.6689 3.5395 44 1 5.9275 -3.6449 2.8509 45 1 7.2583 -7.0776 2.6188 46 1 6.8352 -7.2358 0.8971 47 1 9.4222 -4.2092 2.0859 48 1 8.9446 -5.4210 3.3533 49 1 11.2256 -5.6497 1.2583 50 1 11.1603 -6.3821 2.9204 51 1 12.6429 -8.9999 2.7126 52 1 4.4382 -4.1092 2.9452 53 1 2.8632 -2.2370 3.1609 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085998923.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:20 Heat of formation + Delta-G solvation = 66.832127 kcal Electronic energy + Delta-G solvation = -30327.575195 eV Core-core repulsion = 26394.771047 eV Total energy + Delta-G solvation = -3932.804148 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.55101 -40.37684 -39.45689 -37.77600 -36.54123 -34.25586 -33.68870 -32.35368 -30.76143 -29.87596 -29.66742 -28.08216 -27.77426 -27.13745 -25.32704 -24.51106 -23.75199 -22.74056 -21.10848 -20.95654 -20.41371 -18.78137 -18.58098 -17.93357 -17.41579 -16.98421 -16.60554 -16.42578 -15.95134 -15.77255 -15.60430 -15.33157 -15.22128 -14.89421 -14.65983 -14.58621 -14.17806 -13.95545 -13.83043 -13.81609 -13.61103 -13.38471 -13.32503 -13.14841 -12.98035 -12.86055 -12.73812 -12.64035 -12.51986 -12.31361 -12.23543 -12.17772 -11.80398 -11.70513 -11.55607 -11.41897 -11.32337 -10.91097 -10.84358 -10.65594 -9.87941 -9.62428 -8.89597 -8.22078 -7.89080 -5.23728 0.15738 0.52377 1.43762 1.45138 1.55607 1.89692 2.05373 2.14721 2.49027 2.97997 3.30039 3.43663 3.67677 3.74816 3.87780 3.91563 4.03191 4.17097 4.19753 4.25236 4.29202 4.34912 4.38646 4.47336 4.53059 4.55027 4.64926 4.68699 4.73427 4.77004 4.78824 4.81423 4.88987 4.90809 4.95261 4.99996 5.01064 5.03809 5.06678 5.12778 5.24257 5.28154 5.30739 5.36547 5.39566 5.46556 5.57248 5.60123 5.73518 5.82018 5.96347 6.34799 6.49437 6.53355 6.93517 7.24327 7.61195 8.57914 9.26924 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.028502 B = 0.001947 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.153873 B =14376.145638 C =14568.512944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.129 3.871 3 C -0.159 4.159 4 N -0.618 5.618 5 C 0.079 3.921 6 C 0.243 3.757 7 C -0.216 4.216 8 C -0.025 4.025 9 C -0.217 4.217 10 C 0.551 3.449 11 O -0.600 6.600 12 N -0.600 5.600 13 C 0.052 3.948 14 C 0.136 3.864 15 C 0.131 3.869 16 H 0.023 0.977 17 C -0.121 4.121 18 C 0.146 3.854 19 N -0.629 5.629 20 C -0.230 4.230 21 H 0.074 0.926 22 C -0.066 4.066 23 N -0.951 5.951 24 Si 0.976 3.024 25 H -0.270 1.270 26 H -0.294 1.294 27 H -0.285 1.285 28 C -0.047 4.047 29 C -0.209 4.209 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.139 0.861 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.047 0.953 47 H 0.078 0.922 48 H 0.095 0.905 49 H 0.009 0.991 50 H 0.054 0.946 51 H 0.249 0.751 52 H 0.168 0.832 53 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.619 24.407 3.847 36.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 C -0.217 4.217 4 N -0.325 5.325 5 C -0.063 4.063 6 C 0.137 3.863 7 C -0.238 4.238 8 C -0.045 4.045 9 C -0.222 4.222 10 C 0.343 3.657 11 O -0.483 6.483 12 N -0.331 5.331 13 C -0.088 4.088 14 C 0.011 3.989 15 C 0.023 3.977 16 H 0.040 0.960 17 C -0.159 4.159 18 C 0.021 3.979 19 N -0.356 5.356 20 C -0.358 4.358 21 H 0.092 0.908 22 C -0.259 4.259 23 N -0.600 5.600 24 Si 0.805 3.195 25 H -0.194 1.194 26 H -0.221 1.221 27 H -0.212 1.212 28 C -0.065 4.065 29 C -0.231 4.231 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.157 0.843 41 H 0.130 0.870 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.124 0.876 45 H 0.106 0.894 46 H 0.065 0.935 47 H 0.096 0.904 48 H 0.114 0.886 49 H 0.027 0.973 50 H 0.073 0.927 51 H 0.058 0.942 52 H 0.184 0.816 53 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -26.557 23.998 3.378 35.952 hybrid contribution 0.939 -1.421 -0.842 1.900 sum -25.618 22.577 2.536 34.240 Atomic orbital electron populations 1.22135 0.93858 1.02204 1.03456 1.21265 0.94944 0.93380 0.87828 1.22145 1.01007 0.95367 1.03169 1.46735 1.45823 1.32684 1.07299 1.21878 1.00576 1.00901 0.82903 1.18179 0.87634 0.86732 0.93720 1.20705 1.03587 1.02137 0.97417 1.20931 0.93724 0.92546 0.97273 1.19462 1.05577 1.00842 0.96319 1.18928 0.80385 0.83340 0.82999 1.90731 1.69192 1.59698 1.28634 1.47684 1.43358 1.29840 1.12211 1.22874 1.04090 0.98080 0.83771 1.21303 0.88969 0.86952 1.01663 1.22568 0.90014 0.89166 0.95905 0.95961 1.23533 0.96039 0.97527 0.98813 1.22308 0.92887 0.86326 0.96369 1.46486 1.13275 1.01106 1.74724 1.19364 1.02595 0.81965 1.31888 0.90770 1.25588 0.96512 1.02303 1.01456 1.70010 1.08413 1.35369 1.46174 0.85041 0.77374 0.79955 0.77159 1.19441 1.22109 1.21206 1.22099 0.92516 0.95471 0.96464 1.20914 1.04142 0.99202 0.98846 0.93121 0.91260 0.90284 0.89510 0.93422 0.90431 0.91743 0.92588 0.89823 0.90262 0.84317 0.86972 0.89562 0.90269 0.87606 0.89447 0.93479 0.90352 0.88620 0.97340 0.92744 0.94234 0.81553 0.82670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 9.05 71.98 0.65 -0.37 16 2 C 0.13 1.17 3.15 44.99 0.14 1.31 16 3 C -0.16 -1.17 9.28 71.98 0.67 -0.50 16 4 N -0.62 -6.91 2.88 -698.10 -2.01 -8.92 16 5 C 0.08 0.50 9.60 127.77 1.23 1.72 16 6 C 0.24 3.97 6.53 38.47 0.25 4.22 16 7 C -0.22 -4.24 9.23 22.36 0.21 -4.04 16 8 C -0.02 -0.64 9.57 22.50 0.22 -0.43 16 9 C -0.22 -5.83 5.56 -20.08 -0.11 -5.94 16 10 C 0.55 19.35 7.50 86.69 0.65 20.00 16 11 O -0.60 -27.02 16.16 -4.01 -0.06 -27.09 16 12 N -0.60 -18.81 2.82 -850.54 -2.40 -21.21 16 13 C 0.05 1.05 8.48 127.77 1.08 2.13 16 14 C 0.14 5.34 5.37 86.38 0.46 5.80 16 15 C 0.13 5.84 4.57 45.10 0.21 6.04 16 16 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 17 C -0.12 -4.60 6.76 31.25 0.21 -4.39 16 18 C 0.15 7.31 7.64 86.44 0.66 7.97 16 19 N -0.63 -34.22 3.58 -690.97 -2.48 -36.69 16 20 C -0.23 -13.58 10.51 84.03 0.88 -12.70 16 21 H 0.07 4.32 7.83 -2.91 -0.02 4.30 16 22 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 23 N -0.95 -58.86 11.32 21.65 0.25 -58.61 16 24 Si 0.98 47.71 29.55 68.60 2.03 49.74 16 25 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 27 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 28 C -0.05 -0.88 7.52 22.50 0.17 -0.71 16 29 C -0.21 -3.14 9.23 22.36 0.21 -2.93 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.07 0.32 6.50 -2.38 -0.02 0.31 16 32 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.09 0.91 5.39 -2.38 -0.01 0.90 16 34 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 35 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.06 0.40 7.82 -2.38 -0.02 0.38 16 37 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.08 0.30 6.14 -2.38 -0.01 0.29 16 39 H 0.08 0.39 5.95 -2.39 -0.01 0.38 16 40 H 0.14 2.23 5.83 -2.91 -0.02 2.21 16 41 H 0.11 3.21 7.81 -2.91 -0.02 3.18 16 42 H 0.09 1.27 7.22 -2.39 -0.02 1.25 16 43 H 0.08 1.57 5.74 -2.39 -0.01 1.56 16 44 H 0.11 1.75 4.91 -2.38 -0.01 1.74 16 45 H 0.09 3.32 8.08 -2.39 -0.02 3.31 16 46 H 0.05 2.12 7.45 -2.39 -0.02 2.10 16 47 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 48 H 0.10 3.23 6.70 -2.38 -0.02 3.22 16 49 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 50 H 0.05 2.96 6.97 -2.39 -0.02 2.94 16 51 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 52 H 0.17 2.39 4.23 -2.92 -0.01 2.38 16 53 H 0.16 1.41 6.00 -2.91 -0.02 1.39 16 Total: -1.00 -80.12 406.69 4.49 -75.63 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.91 Total: 13.38 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 8.25 Total: 13.77 kcal Atomic # 7 Polarization: -118.79 SS G_CDS: -6.64 Total: -125.43 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.06 Total: -27.09 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Total: -80.12 4.49 -75.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085998923.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.460 kcal (2) G-P(sol) polarization free energy of solvation -80.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds