Wall clock time and date at job start Wed Apr 1 2020 04:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47395 * 2 1 4 4 N 1.46494 * 109.47297 * 180.02562 * 3 2 1 5 5 C 1.46498 * 119.99636 * 269.99773 * 4 3 2 6 6 C 1.39045 * 120.00652 * 89.99837 * 4 3 2 7 7 C 1.39210 * 119.93712 * 179.97438 * 6 4 3 8 8 C 1.37604 * 120.07409 * 180.02562 * 7 6 4 9 9 C 1.39797 * 119.93052 * 359.97438 * 8 7 6 10 10 C 1.47519 * 120.06935 * 180.02562 * 9 8 7 11 11 O 1.21589 * 120.00333 * 337.82674 * 10 9 8 12 12 N 1.34778 * 120.00037 * 157.56087 * 10 9 8 13 13 C 1.46507 * 119.99752 * 355.52096 * 12 10 9 14 14 C 1.46500 * 120.00419 * 175.51949 * 12 10 9 15 15 C 1.53002 * 109.46728 * 84.68147 * 14 12 10 16 16 H 1.09004 * 112.96658 * 291.83586 * 15 14 12 17 17 C 1.53939 * 113.77089 * 63.51622 * 15 14 12 18 18 C 1.53948 * 86.29152 * 137.90815 * 17 15 14 19 19 N 1.47575 * 113.76926 * 160.16026 * 15 14 12 20 20 C 1.36946 * 134.49351 * 41.05955 * 19 15 14 21 21 H 1.07994 * 119.99597 * 4.22677 * 20 19 15 22 22 C 1.38810 * 119.99889 * 184.21569 * 20 19 15 23 23 N 1.31620 * 120.00215 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99638 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46979 * 60.00961 * 24 22 20 26 26 H 1.48501 * 109.46956 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47530 * 300.00501 * 24 22 20 28 28 C 1.39800 * 119.85736 * 0.27487 * 9 8 7 29 29 C 1.37604 * 119.93007 * 359.47267 * 28 9 8 30 30 H 1.08999 * 109.47319 * 300.00167 * 1 2 3 31 31 H 1.09003 * 109.47152 * 59.99706 * 1 2 3 32 32 H 1.08994 * 109.47477 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47200 * 239.99944 * 2 1 3 34 34 H 1.08996 * 109.47219 * 119.99933 * 2 1 3 35 35 H 1.08999 * 109.47024 * 59.99652 * 3 2 1 36 36 H 1.09003 * 109.47211 * 300.00258 * 3 2 1 37 37 H 1.09005 * 109.47670 * 270.00021 * 5 4 3 38 38 H 1.09008 * 109.47568 * 30.00211 * 5 4 3 39 39 H 1.09002 * 109.47489 * 149.99783 * 5 4 3 40 40 H 1.08006 * 119.96601 * 0.02562 * 7 6 4 41 41 H 1.07999 * 120.03985 * 180.02562 * 8 7 6 42 42 H 1.08999 * 109.47294 * 95.97881 * 13 12 10 43 43 H 1.09005 * 109.46529 * 215.97968 * 13 12 10 44 44 H 1.09005 * 109.47036 * 335.97449 * 13 12 10 45 45 H 1.08994 * 109.47129 * 204.68140 * 14 12 10 46 46 H 1.08998 * 109.46709 * 324.68546 * 14 12 10 47 47 H 1.09000 * 113.74137 * 252.25020 * 17 15 14 48 48 H 1.08997 * 113.74378 * 23.45470 * 17 15 14 49 49 H 1.08997 * 113.76951 * 90.69500 * 18 17 15 50 50 H 1.09004 * 113.76933 * 221.97934 * 18 17 15 51 51 H 0.97004 * 119.99649 * 179.97438 * 23 22 20 52 52 H 1.08005 * 120.03073 * 179.69703 * 28 9 8 53 53 H 1.08004 * 119.96238 * 180.23299 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2379 1.4423 1.2678 6 6 4.1998 1.4426 -1.2050 7 6 5.5919 1.4431 -1.2039 8 6 6.2824 1.4438 -2.3941 9 6 5.5845 1.4434 -3.6054 10 6 6.3216 1.4435 -4.8832 11 8 7.4699 1.8414 -4.9227 12 7 5.7241 0.9977 -6.0060 13 6 4.3784 0.4221 -5.9405 14 6 6.4200 1.0886 -7.2919 15 6 7.3348 -0.1257 -7.4637 16 1 8.1752 -0.1267 -6.7694 17 6 6.5810 -1.4664 -7.5272 18 6 7.5473 -1.8414 -8.6655 19 7 7.7200 -0.3870 -8.8641 20 6 8.0881 0.4018 -9.9214 21 1 8.2043 1.4668 -9.7857 22 6 8.3120 -0.1678 -11.1673 23 7 8.1701 -1.4658 -11.3326 24 14 8.8134 0.9083 -12.6095 25 1 10.0919 1.5948 -12.2940 26 1 8.9896 0.0646 -13.8188 27 1 7.7571 1.9208 -12.8626 28 6 4.1865 1.4482 -3.6032 29 6 3.5018 1.4422 -2.4096 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6767 1.9563 0.8899 36 1 1.6767 1.9564 -0.8900 37 1 4.4198 2.4700 1.5826 38 1 3.6491 0.9284 2.0277 39 1 5.1903 0.9285 1.1372 40 1 6.1307 1.4430 -0.2678 41 1 7.3624 1.4438 -2.3926 42 1 3.6429 1.1891 -6.1830 43 1 4.2985 -0.3970 -6.6553 44 1 4.1928 0.0457 -4.9345 45 1 5.6889 1.1100 -8.1000 46 1 7.0173 2.0000 -7.3181 47 1 6.6979 -2.0784 -6.6329 48 1 5.5425 -1.3714 -7.8444 49 1 8.4512 -2.3470 -8.3257 50 1 7.0655 -2.3480 -9.5018 51 1 8.3263 -1.8637 -12.2034 52 1 3.6445 1.4528 -4.5374 53 1 2.4218 1.4421 -2.4072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086001945.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:29 Heat of formation + Delta-G solvation = 60.049854 kcal Electronic energy + Delta-G solvation = -30288.317221 eV Core-core repulsion = 26355.218971 eV Total energy + Delta-G solvation = -3933.098250 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.53812 -40.29411 -39.39630 -37.47388 -36.53896 -34.39587 -34.16615 -32.11132 -31.51414 -29.85762 -29.46679 -28.45189 -27.66315 -26.01539 -25.31721 -24.27785 -23.25906 -22.79352 -21.67463 -21.04220 -20.47753 -18.77503 -18.39683 -17.88469 -17.43383 -16.99894 -16.68487 -16.40937 -15.97049 -15.86817 -15.64673 -15.34666 -15.29820 -15.06715 -14.79032 -14.46629 -14.13857 -13.94972 -13.90438 -13.82175 -13.51654 -13.34807 -13.30571 -13.10630 -12.98015 -12.87490 -12.73304 -12.57334 -12.50102 -12.30459 -12.19385 -12.12055 -11.79163 -11.64322 -11.58169 -11.43691 -11.32693 -10.88750 -10.82697 -10.64783 -9.87378 -9.62115 -8.89526 -8.23289 -7.88184 -5.23023 0.16005 0.52666 1.44122 1.48124 1.54018 1.90492 2.05857 2.17420 2.49847 2.98604 3.30626 3.43742 3.68940 3.82869 3.90501 3.94048 4.08412 4.14434 4.20350 4.27624 4.30483 4.33140 4.46356 4.48911 4.50945 4.53798 4.63322 4.64122 4.68523 4.74128 4.77717 4.79565 4.88463 4.93194 4.96296 4.99903 5.02600 5.06143 5.11293 5.23642 5.25605 5.25703 5.29193 5.36932 5.46182 5.49872 5.56614 5.60392 5.73241 5.81504 5.96182 6.32498 6.48779 6.52387 6.93466 7.25286 7.61789 8.58640 9.27594 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.022184 B = 0.002034 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.839755 B =13761.820644 C =14261.476006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.116 3.884 4 N -0.624 5.624 5 C 0.082 3.918 6 C 0.241 3.759 7 C -0.214 4.214 8 C -0.026 4.026 9 C -0.216 4.216 10 C 0.551 3.449 11 O -0.598 6.598 12 N -0.600 5.600 13 C 0.054 3.946 14 C 0.137 3.863 15 C 0.131 3.869 16 H 0.022 0.978 17 C -0.121 4.121 18 C 0.148 3.852 19 N -0.629 5.629 20 C -0.232 4.232 21 H 0.076 0.924 22 C -0.066 4.066 23 N -0.951 5.951 24 Si 0.978 3.022 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.272 1.272 28 C -0.048 4.048 29 C -0.208 4.208 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.141 0.859 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.106 0.894 45 H 0.089 0.911 46 H 0.045 0.955 47 H 0.074 0.926 48 H 0.094 0.906 49 H 0.008 0.992 50 H 0.054 0.946 51 H 0.249 0.751 52 H 0.167 0.833 53 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.902 3.863 29.070 36.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C -0.006 4.006 4 N -0.331 5.331 5 C -0.060 4.060 6 C 0.135 3.865 7 C -0.236 4.236 8 C -0.045 4.045 9 C -0.221 4.221 10 C 0.344 3.656 11 O -0.481 6.481 12 N -0.331 5.331 13 C -0.086 4.086 14 C 0.013 3.987 15 C 0.024 3.976 16 H 0.040 0.960 17 C -0.159 4.159 18 C 0.023 3.977 19 N -0.356 5.356 20 C -0.360 4.360 21 H 0.093 0.907 22 C -0.259 4.259 23 N -0.600 5.600 24 Si 0.805 3.195 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.198 1.198 28 C -0.067 4.067 29 C -0.230 4.230 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.159 0.841 41 H 0.131 0.869 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.124 0.876 45 H 0.108 0.892 46 H 0.064 0.936 47 H 0.093 0.907 48 H 0.113 0.887 49 H 0.025 0.975 50 H 0.072 0.928 51 H 0.058 0.942 52 H 0.184 0.816 53 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -20.360 4.134 28.918 35.607 hybrid contribution 1.419 0.293 -1.150 1.850 sum -18.941 4.427 27.768 33.903 Atomic orbital electron populations 1.21692 0.94270 1.02197 1.02520 1.21916 0.96718 0.97040 1.02131 1.21732 0.77862 0.97049 1.04006 1.46673 1.05820 1.77542 1.03084 1.21854 0.97604 1.02027 0.84519 1.18174 0.91063 0.90258 0.86975 1.20702 0.92617 1.12113 0.98188 1.20946 0.99600 0.92716 0.91287 1.19473 0.94775 1.16225 0.91627 1.18908 0.85558 0.76504 0.84663 1.90734 1.19911 1.50775 1.86639 1.47692 1.18401 1.60709 1.06327 1.22848 0.81276 0.99438 1.05069 1.21298 0.95528 0.97328 0.84552 1.22556 0.94190 0.95258 0.85623 0.96005 1.23494 0.99114 0.95420 0.97861 1.22282 0.94404 0.85917 0.95138 1.46485 1.79787 1.03469 1.05839 1.19303 1.38755 0.90528 0.87440 0.90652 1.25605 1.03009 0.97335 0.99934 1.70002 1.56402 1.10576 1.23034 0.85175 0.78237 0.77612 0.78439 1.21055 1.21704 1.19755 1.22096 0.91931 0.92375 1.00297 1.20875 1.00841 1.11217 0.90062 0.91920 0.92041 0.92613 0.92587 0.92147 0.89142 0.89869 0.92535 0.89715 0.91152 0.84090 0.86924 0.89554 0.90430 0.87642 0.89228 0.93619 0.90739 0.88722 0.97457 0.92774 0.94230 0.81591 0.83042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 71.98 0.71 -0.04 16 2 C -0.14 -0.98 6.26 30.59 0.19 -0.79 16 3 C 0.12 0.79 5.15 86.38 0.44 1.24 16 4 N -0.62 -6.83 2.99 -722.21 -2.16 -8.99 16 5 C 0.08 0.61 10.17 127.77 1.30 1.91 16 6 C 0.24 3.90 6.55 38.47 0.25 4.15 16 7 C -0.21 -4.12 9.18 22.35 0.21 -3.92 16 8 C -0.03 -0.66 9.57 22.50 0.22 -0.44 16 9 C -0.22 -5.78 5.56 -20.08 -0.11 -5.89 16 10 C 0.55 19.27 7.47 86.69 0.65 19.92 16 11 O -0.60 -26.82 16.27 -4.00 -0.07 -26.89 16 12 N -0.60 -18.75 2.75 -850.54 -2.34 -21.10 16 13 C 0.05 1.09 8.46 127.77 1.08 2.17 16 14 C 0.14 5.39 5.27 86.38 0.46 5.85 16 15 C 0.13 5.92 4.55 45.09 0.21 6.12 16 16 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 17 C -0.12 -4.70 7.16 31.25 0.22 -4.48 16 18 C 0.15 7.47 7.63 86.44 0.66 8.13 16 19 N -0.63 -34.38 3.58 -690.98 -2.48 -36.86 16 20 C -0.23 -13.70 10.51 84.03 0.88 -12.82 16 21 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 22 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 23 N -0.95 -59.00 11.33 21.65 0.25 -58.76 16 24 Si 0.98 47.54 29.55 68.60 2.03 49.56 16 25 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 26 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 27 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 28 C -0.05 -0.91 7.52 22.50 0.17 -0.74 16 29 C -0.21 -3.16 9.18 22.36 0.21 -2.95 16 30 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.06 0.55 8.14 -2.38 -0.02 0.54 16 34 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.09 0.37 8.07 -2.39 -0.02 0.35 16 36 H 0.08 0.53 6.17 -2.39 -0.01 0.51 16 37 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 38 H 0.08 0.34 8.07 -2.38 -0.02 0.33 16 39 H 0.07 0.56 6.17 -2.39 -0.01 0.54 16 40 H 0.14 2.15 6.11 -2.91 -0.02 2.13 16 41 H 0.11 3.20 7.80 -2.91 -0.02 3.18 16 42 H 0.09 1.26 7.21 -2.39 -0.02 1.25 16 43 H 0.08 1.54 6.30 -2.38 -0.02 1.52 16 44 H 0.11 1.75 4.92 -2.38 -0.01 1.74 16 45 H 0.09 3.39 8.03 -2.39 -0.02 3.37 16 46 H 0.05 2.02 7.66 -2.39 -0.02 2.00 16 47 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 48 H 0.09 3.27 6.71 -2.39 -0.02 3.26 16 49 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 50 H 0.05 2.97 7.00 -2.39 -0.02 2.95 16 51 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 52 H 0.17 2.40 4.21 -2.91 -0.01 2.39 16 53 H 0.15 1.49 6.11 -2.91 -0.02 1.47 16 Total: -1.00 -79.92 413.37 4.34 -75.58 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.90 Total: 13.46 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 8.21 Total: 13.98 kcal Atomic # 7 Polarization: -118.97 SS G_CDS: -6.73 Total: -125.70 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.07 Total: -26.89 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.56 kcal Total: -79.92 4.34 -75.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086001945.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.632 kcal (2) G-P(sol) polarization free energy of solvation -79.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds