Wall clock time and date at job start Wed Apr 1 2020 04:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47308 * 2 1 4 4 H 1.09004 * 109.99109 * 54.11866 * 3 2 1 5 5 C 1.54331 * 109.99520 * 293.07951 * 3 2 1 6 6 H 1.09000 * 110.51408 * 336.97256 * 5 3 2 7 7 N 1.46499 * 111.00475 * 100.12580 * 5 3 2 8 8 C 1.34773 * 119.99821 * 200.23599 * 7 5 3 9 9 O 1.21557 * 120.00332 * 359.97438 * 8 7 5 10 10 C 1.47849 * 119.99712 * 179.97438 * 8 7 5 11 11 C 1.39579 * 120.14555 * 359.72636 * 10 8 7 12 12 C 1.37956 * 119.84757 * 179.78687 * 11 10 8 13 13 C 1.38358 * 120.15131 * 0.48830 * 12 11 10 14 14 C 1.50696 * 119.85400 * 179.72411 * 13 12 11 15 15 N 1.46905 * 109.47007 * 270.01710 * 14 13 12 16 16 C 1.46900 * 110.99708 * 66.04635 * 15 14 13 17 17 C 1.46896 * 111.00251 * 190.00385 * 15 14 13 18 18 C 1.38360 * 120.28815 * 359.74238 * 13 12 11 19 19 C 1.37957 * 120.14717 * 0.02562 * 18 13 12 20 20 C 1.55159 * 103.01876 * 218.66420 * 5 3 2 21 21 C 1.54906 * 101.58453 * 35.30499 * 20 5 3 22 22 N 1.47020 * 109.88118 * 175.20671 * 3 2 1 23 23 C 1.36939 * 125.64972 * 298.39582 * 22 3 2 24 24 H 1.07995 * 119.99830 * 347.37091 * 23 22 3 25 25 C 1.38810 * 119.99712 * 167.64216 * 23 22 3 26 26 N 1.31618 * 120.00217 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99808 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47325 * 90.00040 * 27 25 23 29 29 H 1.48503 * 109.47119 * 209.99773 * 27 25 23 30 30 H 1.48495 * 109.47135 * 329.99886 * 27 25 23 31 31 H 1.08999 * 109.46753 * 305.43077 * 1 2 3 32 32 H 1.09001 * 109.47115 * 65.42423 * 1 2 3 33 33 H 1.08997 * 109.47354 * 185.43031 * 1 2 3 34 34 H 1.09006 * 109.46951 * 240.00583 * 2 1 3 35 35 H 1.08994 * 109.47416 * 120.00829 * 2 1 3 36 36 H 0.97001 * 119.99917 * 20.23074 * 7 5 3 37 37 H 1.07996 * 120.07224 * 359.97438 * 11 10 8 38 38 H 1.08001 * 119.92343 * 180.22929 * 12 11 10 39 39 H 1.08998 * 109.47637 * 30.01622 * 14 13 12 40 40 H 1.09000 * 109.47280 * 150.02610 * 14 13 12 41 41 H 1.08999 * 109.47074 * 60.00533 * 16 15 14 42 42 H 1.09001 * 109.47175 * 180.02562 * 16 15 14 43 43 H 1.09003 * 109.47544 * 300.00041 * 16 15 14 44 44 H 1.09003 * 109.47155 * 59.99870 * 17 15 14 45 45 H 1.08996 * 109.47214 * 180.02562 * 17 15 14 46 46 H 1.09005 * 109.46680 * 300.00148 * 17 15 14 47 47 H 1.07999 * 119.92734 * 180.02562 * 18 13 12 48 48 H 1.07998 * 120.07516 * 179.97438 * 19 18 13 49 49 H 1.09005 * 111.00041 * 277.23005 * 20 5 3 50 50 H 1.09002 * 111.00499 * 153.38150 * 20 5 3 51 51 H 1.08994 * 110.37075 * 204.15482 * 21 20 5 52 52 H 1.08999 * 110.46305 * 81.87075 * 21 20 5 53 53 H 0.97001 * 120.00246 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5982 1.9940 0.8300 5 6 1.6800 2.1295 -1.3342 6 1 1.5241 1.3867 -2.1165 7 7 0.4954 2.9785 -1.1848 8 6 -0.2194 3.3350 -2.2703 9 8 0.1189 2.9525 -3.3734 10 6 -1.4152 4.1913 -2.1194 11 6 -1.8098 4.6275 -0.8535 12 6 -2.9240 5.4300 -0.7203 13 6 -3.6557 5.7941 -1.8367 14 6 -4.8753 6.6658 -1.6827 15 7 -6.0598 5.8199 -1.4839 16 6 -5.9827 5.0979 -0.2069 17 6 -7.2932 6.6134 -1.5665 18 6 -3.2727 5.3612 -3.0937 19 6 -2.1578 4.5622 -3.2415 20 6 2.9365 2.9885 -1.6353 21 6 4.0699 2.0824 -1.0932 22 7 3.5056 1.4546 0.1155 23 6 4.2273 0.9594 1.1687 24 1 3.7285 0.7008 2.0910 25 6 5.6008 0.7953 1.0528 26 7 6.2095 1.1160 -0.0693 27 14 6.5852 0.1192 2.4892 28 1 6.6502 -1.3612 2.3917 29 1 7.9604 0.6784 2.4537 30 1 5.9276 0.5029 3.7641 31 1 -0.3633 0.5958 0.8374 32 1 -0.3633 0.4274 -0.9346 33 1 -0.3634 -1.0230 0.0972 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8898 36 1 0.2256 3.2840 -0.3045 37 1 -1.2423 4.3400 0.0192 38 1 -3.2282 5.7712 0.2582 39 1 -4.7476 7.3205 -0.8206 40 1 -5.0064 7.2692 -2.5810 41 1 -5.9234 5.8143 0.6125 42 1 -6.8717 4.4790 -0.0852 43 1 -5.0957 4.4643 -0.2006 44 1 -7.3590 7.0816 -2.5486 45 1 -8.1546 5.9628 -1.4154 46 1 -7.2813 7.3847 -0.7963 47 1 -3.8479 5.6493 -3.9612 48 1 -1.8601 4.2246 -4.2232 49 1 2.9011 3.9350 -1.0958 50 1 3.0483 3.1553 -2.7067 51 1 4.9442 2.6807 -0.8369 52 1 4.3338 1.3216 -1.8277 53 1 7.1692 1.0009 -0.1504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087762857.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:09 Heat of formation + Delta-G solvation = -1.642630 kcal Electronic energy + Delta-G solvation = -30436.893981 eV Core-core repulsion = 26501.120544 eV Total energy + Delta-G solvation = -3935.773437 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.44163 -40.21864 -39.16105 -37.73004 -35.69397 -34.37941 -33.60921 -32.74780 -31.93517 -30.78849 -28.61905 -28.37778 -27.69041 -26.32440 -24.44236 -23.75673 -23.27246 -22.44485 -22.01251 -21.46453 -21.00032 -18.85254 -18.73849 -17.58597 -16.80962 -16.74174 -16.42078 -16.37459 -16.04725 -15.96936 -15.72980 -15.43616 -15.29082 -15.15579 -14.79835 -14.48434 -14.38825 -14.06658 -13.84308 -13.57054 -13.43050 -13.24499 -13.19647 -13.03419 -12.86740 -12.73543 -12.63708 -12.58017 -12.44442 -12.23934 -12.18179 -12.05096 -11.97852 -11.92096 -11.89502 -11.56442 -11.38332 -10.98210 -10.68211 -10.11913 -9.91548 -9.76416 -9.24640 -8.84943 -7.83633 -5.22092 -0.16685 0.44453 1.47512 1.49211 1.57575 1.83082 2.07631 2.51872 2.80202 3.26925 3.34907 3.51795 3.69025 3.79459 3.86320 3.89182 3.90965 4.03158 4.18111 4.25420 4.34380 4.36332 4.40300 4.43702 4.49945 4.59429 4.61417 4.63072 4.65275 4.73409 4.79174 4.80306 4.85721 4.89204 5.01018 5.07375 5.08067 5.09466 5.13501 5.19147 5.28593 5.32000 5.41807 5.45456 5.50483 5.56985 5.57701 5.65093 5.72617 5.92126 6.06592 6.11318 6.23581 6.54414 7.09122 7.20482 7.76926 8.43634 9.26689 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.020627 B = 0.002119 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.145753 B =13211.094489 C =13663.053501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.127 4.127 3 C 0.160 3.840 4 H 0.054 0.946 5 C 0.157 3.843 6 H 0.075 0.925 7 N -0.696 5.696 8 C 0.556 3.444 9 O -0.582 6.582 10 C -0.147 4.147 11 C -0.082 4.082 12 C -0.118 4.118 13 C -0.053 4.053 14 C 0.091 3.909 15 N -0.558 5.558 16 C 0.018 3.982 17 C 0.024 3.976 18 C -0.108 4.108 19 C -0.074 4.074 20 C -0.141 4.141 21 C 0.180 3.820 22 N -0.613 5.613 23 C -0.229 4.229 24 H 0.085 0.915 25 C -0.067 4.067 26 N -0.951 5.951 27 Si 0.976 3.024 28 H -0.289 1.289 29 H -0.297 1.297 30 H -0.265 1.265 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.035 0.965 35 H 0.052 0.948 36 H 0.411 0.589 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.056 0.944 40 H 0.095 0.905 41 H 0.035 0.965 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.032 0.968 47 H 0.144 0.856 48 H 0.123 0.877 49 H 0.072 0.928 50 H 0.064 0.936 51 H 0.047 0.953 52 H -0.008 1.008 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.898 12.785 0.086 30.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.053 3.947 4 H 0.072 0.928 5 C 0.051 3.949 6 H 0.093 0.907 7 N -0.347 5.347 8 C 0.345 3.655 9 O -0.463 6.463 10 C -0.150 4.150 11 C -0.101 4.101 12 C -0.136 4.136 13 C -0.054 4.054 14 C -0.036 4.036 15 N -0.282 5.282 16 C -0.130 4.130 17 C -0.123 4.123 18 C -0.126 4.126 19 C -0.093 4.093 20 C -0.181 4.181 21 C 0.054 3.946 22 N -0.337 5.337 23 C -0.358 4.358 24 H 0.103 0.897 25 C -0.260 4.260 26 N -0.599 5.599 27 Si 0.805 3.195 28 H -0.216 1.216 29 H -0.224 1.224 30 H -0.190 1.190 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.250 0.750 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.075 0.925 40 H 0.113 0.887 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.050 0.950 47 H 0.162 0.838 48 H 0.141 0.859 49 H 0.091 0.909 50 H 0.082 0.918 51 H 0.066 0.934 52 H 0.010 0.990 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -27.469 12.133 -0.973 30.045 hybrid contribution 1.334 -0.102 1.225 1.814 sum -26.135 12.031 0.252 28.773 Atomic orbital electron populations 1.21654 0.93824 1.02025 1.01709 1.21913 0.96496 0.97559 1.00676 1.21239 0.84659 0.94607 0.94203 0.92806 1.21654 0.83939 0.91861 0.97442 0.90708 1.45735 1.27532 1.51259 1.10183 1.18731 0.83157 0.79764 0.83815 1.90746 1.71467 1.57135 1.26961 1.19859 0.96732 1.02491 0.95925 1.21477 0.96764 0.96068 0.95767 1.21234 0.94761 0.98163 0.99439 1.20157 0.95614 0.96586 0.93065 1.21147 0.86865 0.92781 1.02769 1.61974 1.02352 1.29279 1.34603 1.22500 1.03099 0.98415 0.88999 1.22429 0.91332 0.96727 1.01857 1.21136 0.95849 0.97377 0.98247 1.21311 0.94138 0.95742 0.98146 1.23230 0.95754 0.98792 1.00338 1.21182 0.93886 0.92538 0.86950 1.44703 1.00609 1.69333 1.19082 1.19322 0.89823 1.34748 0.91902 0.89736 1.25710 0.98192 1.02299 0.99765 1.70145 1.08572 1.54503 1.26717 0.85107 0.77608 0.77645 0.79143 1.21636 1.22413 1.18970 0.91335 0.93479 0.92172 0.94615 0.92950 0.75048 0.83789 0.83371 0.92542 0.88672 0.94648 0.91088 0.91527 0.90645 0.90874 0.94970 0.83801 0.85906 0.90902 0.91767 0.93441 0.99037 0.94432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 9.66 71.98 0.70 -2.98 16 2 C -0.13 -4.63 5.43 30.59 0.17 -4.47 16 3 C 0.16 6.21 2.92 45.34 0.13 6.34 16 4 H 0.05 1.92 7.70 -2.38 -0.02 1.91 16 5 C 0.16 5.69 1.99 46.18 0.09 5.79 16 6 H 0.07 3.03 7.32 -2.39 -0.02 3.01 16 7 N -0.70 -19.76 4.98 -439.76 -2.19 -21.95 16 8 C 0.56 16.99 7.77 86.79 0.67 17.66 16 9 O -0.58 -22.67 16.07 -3.90 -0.06 -22.73 16 10 C -0.15 -3.48 5.87 -20.09 -0.12 -3.59 16 11 C -0.08 -1.42 9.54 22.53 0.21 -1.20 16 12 C -0.12 -1.63 7.94 22.23 0.18 -1.45 16 13 C -0.05 -0.77 4.89 -19.81 -0.10 -0.86 16 14 C 0.09 0.96 5.11 85.55 0.44 1.40 16 15 N -0.56 -6.51 5.01 -953.47 -4.78 -11.28 16 16 C 0.02 0.19 9.13 127.69 1.17 1.36 16 17 C 0.02 0.19 9.57 127.69 1.22 1.42 16 18 C -0.11 -1.83 9.68 22.23 0.22 -1.61 16 19 C -0.07 -1.67 9.60 22.53 0.22 -1.45 16 20 C -0.14 -5.73 6.77 31.99 0.22 -5.51 16 21 C 0.18 9.14 5.46 86.85 0.47 9.62 16 22 N -0.61 -30.66 3.13 -668.25 -2.09 -32.75 16 23 C -0.23 -12.42 9.73 84.03 0.82 -11.60 16 24 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 25 C -0.07 -3.75 5.47 84.86 0.46 -3.29 16 26 N -0.95 -57.32 10.47 21.65 0.23 -57.10 16 27 Si 0.98 45.36 29.55 68.60 2.03 47.39 16 28 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 29 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 30 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 1.32 7.49 -2.39 -0.02 1.30 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.03 1.44 8.03 -2.38 -0.02 1.42 16 35 H 0.05 2.04 7.85 -2.39 -0.02 2.02 16 36 H 0.41 9.13 6.37 -92.71 -0.59 8.54 16 37 H 0.14 1.90 6.41 -2.91 -0.02 1.88 16 38 H 0.15 1.33 8.03 -2.91 -0.02 1.31 16 39 H 0.06 0.49 8.06 -2.39 -0.02 0.47 16 40 H 0.09 0.83 8.00 -2.39 -0.02 0.81 16 41 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.07 0.70 8.12 -2.39 -0.02 0.68 16 43 H 0.07 0.82 6.16 -2.39 -0.01 0.81 16 44 H 0.07 0.51 8.12 -2.39 -0.02 0.49 16 45 H 0.07 0.54 8.12 -2.39 -0.02 0.52 16 46 H 0.03 0.22 8.14 -2.38 -0.02 0.20 16 47 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 48 H 0.12 3.01 7.65 -2.91 -0.02 2.98 16 49 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 50 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 51 H 0.05 2.69 6.74 -2.39 -0.02 2.67 16 52 H -0.01 -0.48 8.11 -2.39 -0.02 -0.49 16 53 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -71.07 418.40 0.60 -70.47 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.29 Total: 22.39 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 7.17 Total: 5.57 kcal Atomic # 7 Polarization: -114.24 SS G_CDS: -8.83 Total: -123.07 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.06 Total: -22.73 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -71.07 0.60 -70.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087762857.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.825 kcal (2) G-P(sol) polarization free energy of solvation -71.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds