Wall clock time and date at job start Wed Apr 1 2020 04:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47357 * 2 1 4 4 H 1.09005 * 109.87130 * 304.64986 * 3 2 1 5 5 C 1.54321 * 110.01214 * 183.54757 * 3 2 1 6 6 H 1.09003 * 110.72063 * 336.68047 * 5 3 2 7 7 N 1.46498 * 110.71752 * 99.95653 * 5 3 2 8 8 C 1.34780 * 119.99843 * 204.99764 * 7 5 3 9 9 O 1.21558 * 119.99898 * 359.97438 * 8 7 5 10 10 C 1.47843 * 120.00077 * 180.02562 * 8 7 5 11 11 C 1.39589 * 120.14311 * 359.72282 * 10 8 7 12 12 C 1.37939 * 119.85317 * 179.78909 * 11 10 8 13 13 C 1.38384 * 120.14295 * 0.49327 * 12 11 10 14 14 C 1.38337 * 120.29114 * 359.73427 * 13 12 11 15 15 C 1.50701 * 119.92526 * 180.02562 * 14 13 12 16 16 N 1.46905 * 109.46940 * 270.02499 * 15 14 13 17 17 C 1.46905 * 110.99567 * 170.00270 * 16 15 14 18 18 C 1.46896 * 110.99993 * 293.95534 * 16 15 14 19 19 C 1.37978 * 120.14973 * 0.03154 * 14 13 12 20 20 C 1.55158 * 102.94187 * 218.31883 * 5 3 2 21 21 C 1.54694 * 101.67611 * 35.33689 * 20 5 3 22 22 N 1.47025 * 109.87979 * 65.66061 * 3 2 1 23 23 C 1.36932 * 125.64979 * 298.47879 * 22 3 2 24 24 H 1.08005 * 120.00433 * 333.99884 * 23 22 3 25 25 C 1.38811 * 120.00329 * 153.99054 * 23 22 3 26 26 N 1.31614 * 119.99907 * 335.07347 * 25 23 22 27 27 Si 1.86802 * 120.00370 * 155.06218 * 25 23 22 28 28 H 1.48504 * 109.46826 * 90.00240 * 27 25 23 29 29 H 1.48500 * 109.47049 * 330.00980 * 27 25 23 30 30 H 1.48498 * 109.47488 * 210.00698 * 27 25 23 31 31 H 1.08997 * 109.47145 * 171.64195 * 1 2 3 32 32 H 1.09004 * 109.46745 * 291.63812 * 1 2 3 33 33 H 1.08991 * 109.47279 * 51.63420 * 1 2 3 34 34 H 1.08997 * 109.46816 * 240.00279 * 2 1 3 35 35 H 1.08999 * 109.47625 * 120.00446 * 2 1 3 36 36 H 0.96993 * 120.00326 * 24.99735 * 7 5 3 37 37 H 1.07998 * 120.07821 * 0.02562 * 11 10 8 38 38 H 1.07993 * 119.92951 * 180.21039 * 12 11 10 39 39 H 1.07998 * 119.85723 * 179.76897 * 13 12 11 40 40 H 1.09000 * 109.47492 * 30.02292 * 15 14 13 41 41 H 1.08995 * 109.47214 * 150.02810 * 15 14 13 42 42 H 1.08997 * 109.47266 * 60.00325 * 17 16 15 43 43 H 1.09004 * 109.46486 * 180.02562 * 17 16 15 44 44 H 1.09000 * 109.47145 * 299.99342 * 17 16 15 45 45 H 1.08995 * 109.47501 * 60.00363 * 18 16 15 46 46 H 1.09004 * 109.47418 * 180.02562 * 18 16 15 47 47 H 1.09007 * 109.47172 * 299.99987 * 18 16 15 48 48 H 1.07997 * 120.07901 * 179.97438 * 19 14 13 49 49 H 1.09000 * 111.00471 * 153.57731 * 20 5 3 50 50 H 1.09000 * 111.00191 * 277.42987 * 20 5 3 51 51 H 1.09003 * 110.39292 * 204.36381 * 21 20 5 52 52 H 1.08998 * 110.24051 * 82.11079 * 21 20 5 53 53 H 0.96998 * 120.00420 * 353.72907 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6141 1.9862 -0.8433 5 6 3.5806 1.4580 -0.0897 6 1 3.9973 0.5175 0.2708 7 7 4.0171 1.7278 -1.4619 8 6 5.2271 1.3056 -1.8794 9 8 5.9562 0.7013 -1.1173 10 6 5.6679 1.5785 -3.2640 11 6 4.8310 2.2680 -4.1430 12 6 5.2501 2.5231 -5.4322 13 6 6.4930 2.0882 -5.8578 14 6 7.3252 1.4002 -4.9931 15 6 8.6773 0.9308 -5.4650 16 7 8.5564 -0.4188 -6.0325 17 6 9.7954 -0.8159 -6.7147 18 6 8.1895 -1.3943 -4.9973 19 6 6.9201 1.1426 -3.6995 20 6 3.9718 2.6282 0.8510 21 6 2.9013 2.5085 1.9613 22 7 1.6695 2.1039 1.2597 23 6 0.3917 2.3143 1.7048 24 1 -0.4215 2.3867 0.9978 25 6 0.1414 2.4344 3.0649 26 7 0.9610 1.8849 3.9359 27 14 -1.3584 3.3761 3.6591 28 1 -2.5100 2.4465 3.7819 29 1 -1.6886 4.4469 2.6846 30 1 -1.0692 3.9836 4.9829 31 1 -0.3633 -1.0167 -0.1494 32 1 -0.3633 0.3790 0.9553 33 1 -0.3633 0.6378 -0.8057 34 1 1.8932 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 3.4355 2.2103 -2.0698 37 1 3.8592 2.6044 -3.8135 38 1 4.6051 3.0595 -6.1123 39 1 6.8150 2.2872 -6.8693 40 1 9.0531 1.6132 -6.2274 41 1 9.3690 0.9102 -4.6230 42 1 10.6205 -0.8089 -6.0026 43 1 9.6784 -1.8186 -7.1259 44 1 10.0063 -0.1148 -7.5222 45 1 7.2331 -1.1138 -4.5563 46 1 8.1072 -2.3850 -5.4444 47 1 8.9566 -1.4082 -4.2230 48 1 7.5706 0.6050 -3.0255 49 1 4.9740 2.4863 1.2552 50 1 3.8914 3.5861 0.3371 51 1 2.7580 3.4692 2.4559 52 1 3.1927 1.7478 2.6856 53 1 1.6876 1.3204 3.6290 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087839248.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:14 Heat of formation + Delta-G solvation = -5.540417 kcal Electronic energy + Delta-G solvation = -30571.645577 eV Core-core repulsion = 26635.703120 eV Total energy + Delta-G solvation = -3935.942457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.51899 -40.29267 -39.28058 -37.84591 -35.86855 -34.36040 -33.84691 -32.70939 -32.10568 -30.41631 -28.68064 -28.44985 -27.68995 -26.43343 -24.87187 -23.59669 -23.38021 -22.49773 -21.94805 -21.65803 -20.88636 -19.30918 -18.67159 -17.78684 -17.02029 -16.66141 -16.48484 -16.33922 -16.10261 -16.05713 -15.80755 -15.52756 -15.32984 -15.19144 -14.89995 -14.70983 -14.61695 -14.06302 -13.81316 -13.75716 -13.43104 -13.37430 -13.25166 -13.00224 -12.85953 -12.73977 -12.68684 -12.55472 -12.51148 -12.39916 -12.20079 -11.93513 -11.89283 -11.85820 -11.76266 -11.58833 -11.39599 -11.07685 -10.44748 -10.22842 -9.90725 -9.83448 -9.33887 -8.93062 -8.18344 -5.33096 -0.14808 0.33799 1.59875 1.67825 1.79419 1.83973 1.98693 2.67737 2.74693 3.20843 3.26112 3.41044 3.65910 3.68659 3.73036 3.74286 3.89448 4.07013 4.08314 4.21308 4.24680 4.29035 4.34918 4.36781 4.41763 4.43211 4.53219 4.54889 4.58549 4.64600 4.72354 4.75675 4.84266 4.86556 4.91585 4.97382 4.98386 5.01885 5.03154 5.03865 5.12426 5.20553 5.28508 5.32242 5.41620 5.51847 5.54202 5.63301 5.83738 5.90553 5.96340 6.05570 6.38645 6.45355 6.95005 7.11381 7.74480 8.35854 9.07945 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.023333 B = 0.002126 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.745179 B =13166.094930 C =13281.387289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C 0.156 3.844 4 H 0.054 0.946 5 C 0.150 3.850 6 H 0.076 0.924 7 N -0.697 5.697 8 C 0.556 3.444 9 O -0.583 6.583 10 C -0.151 4.151 11 C -0.084 4.084 12 C -0.122 4.122 13 C -0.068 4.068 14 C -0.093 4.093 15 C 0.094 3.906 16 N -0.550 5.550 17 C 0.023 3.977 18 C 0.020 3.980 19 C -0.066 4.066 20 C -0.129 4.129 21 C 0.148 3.852 22 N -0.606 5.606 23 C -0.312 4.312 24 H 0.066 0.934 25 C -0.083 4.083 26 N -0.949 5.949 27 Si 1.113 2.887 28 H -0.284 1.284 29 H -0.272 1.272 30 H -0.297 1.297 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.028 0.972 36 H 0.413 0.587 37 H 0.144 0.856 38 H 0.161 0.839 39 H 0.154 0.846 40 H 0.107 0.893 41 H 0.039 0.961 42 H 0.026 0.974 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.056 0.944 46 H 0.076 0.924 47 H 0.023 0.977 48 H 0.113 0.887 49 H 0.070 0.930 50 H 0.081 0.919 51 H 0.027 0.973 52 H 0.002 0.998 53 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.596 0.096 -26.265 29.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.158 4.158 3 C 0.049 3.951 4 H 0.072 0.928 5 C 0.044 3.956 6 H 0.094 0.906 7 N -0.349 5.349 8 C 0.346 3.654 9 O -0.465 6.465 10 C -0.154 4.154 11 C -0.103 4.103 12 C -0.140 4.140 13 C -0.087 4.087 14 C -0.094 4.094 15 C -0.034 4.034 16 N -0.274 5.274 17 C -0.125 4.125 18 C -0.128 4.128 19 C -0.086 4.086 20 C -0.168 4.168 21 C 0.022 3.978 22 N -0.332 5.332 23 C -0.441 4.441 24 H 0.084 0.916 25 C -0.279 4.279 26 N -0.592 5.592 27 Si 0.938 3.062 28 H -0.211 1.211 29 H -0.198 1.198 30 H -0.223 1.223 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.251 0.749 37 H 0.161 0.839 38 H 0.178 0.822 39 H 0.171 0.829 40 H 0.125 0.875 41 H 0.057 0.943 42 H 0.045 0.955 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.075 0.925 46 H 0.095 0.905 47 H 0.042 0.958 48 H 0.131 0.869 49 H 0.088 0.912 50 H 0.100 0.900 51 H 0.045 0.955 52 H 0.019 0.981 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.838 0.252 -24.721 27.857 hybrid contribution 1.214 -0.859 0.063 1.488 sum 14.052 -0.607 -24.658 28.387 Atomic orbital electron populations 1.21764 0.95385 1.00272 1.02460 1.21816 0.97192 0.97173 0.99640 1.21320 0.90912 0.92475 0.90365 0.92820 1.21696 0.94196 0.98009 0.81654 0.90574 1.45725 1.17909 1.57989 1.13260 1.18770 0.81031 0.77792 0.87846 1.90742 1.54996 1.43227 1.57485 1.19785 0.97372 1.05457 0.92759 1.21578 0.99146 0.95631 0.93965 1.21474 0.96889 1.00088 0.95512 1.21559 0.93056 0.94082 0.99966 1.19814 0.97535 0.99338 0.92686 1.21118 0.92223 0.90890 0.99119 1.62045 1.34538 1.01768 1.29036 1.22463 0.88923 1.02530 0.98544 1.22439 1.00231 0.96461 0.93667 1.21106 0.94590 0.96918 0.95995 1.23015 0.98062 0.98912 0.96840 1.21336 0.86516 0.96351 0.93571 1.44700 1.01571 1.65837 1.21094 1.19808 0.84666 1.47019 0.92568 0.91649 1.27105 1.06056 1.01553 0.93151 1.70846 1.19823 1.31728 1.36813 0.82889 0.72416 0.75682 0.75179 1.21112 1.19758 1.22318 0.93164 0.92797 0.92807 0.91531 0.95319 0.74871 0.83869 0.82161 0.82855 0.87517 0.94257 0.95505 0.90694 0.89833 0.92516 0.90511 0.95794 0.86938 0.91162 0.90022 0.95461 0.98065 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.39 8.96 71.98 0.65 -4.74 16 2 C -0.12 -4.56 5.48 30.60 0.17 -4.40 16 3 C 0.16 6.08 2.99 45.34 0.14 6.22 16 4 H 0.05 1.95 7.72 -2.38 -0.02 1.93 16 5 C 0.15 5.39 2.85 46.18 0.13 5.52 16 6 H 0.08 3.08 7.27 -2.39 -0.02 3.07 16 7 N -0.70 -19.78 5.13 -439.77 -2.25 -22.04 16 8 C 0.56 17.03 7.77 86.79 0.67 17.70 16 9 O -0.58 -22.69 15.99 -3.90 -0.06 -22.75 16 10 C -0.15 -3.58 5.87 -20.09 -0.12 -3.70 16 11 C -0.08 -1.44 9.54 22.52 0.21 -1.22 16 12 C -0.12 -1.56 10.03 22.23 0.22 -1.34 16 13 C -0.07 -0.89 9.69 22.33 0.22 -0.68 16 14 C -0.09 -1.59 4.88 -19.90 -0.10 -1.69 16 15 C 0.09 1.31 5.11 85.56 0.44 1.75 16 16 N -0.55 -8.18 5.01 -953.45 -4.78 -12.96 16 17 C 0.02 0.24 9.57 127.69 1.22 1.46 16 18 C 0.02 0.35 9.14 127.69 1.17 1.51 16 19 C -0.07 -1.51 7.51 22.53 0.17 -1.34 16 20 C -0.13 -4.87 6.76 31.91 0.22 -4.66 16 21 C 0.15 7.06 5.56 86.78 0.48 7.54 16 22 N -0.61 -29.39 2.92 -668.67 -1.95 -31.35 16 23 C -0.31 -16.58 7.23 84.03 0.61 -15.97 16 24 H 0.07 3.41 7.22 -2.91 -0.02 3.39 16 25 C -0.08 -4.64 5.18 84.86 0.44 -4.20 16 26 N -0.95 -58.37 13.06 21.65 0.28 -58.09 16 27 Si 1.11 50.62 29.99 68.60 2.06 52.67 16 28 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 29 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 30 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 2.48 5.53 -2.38 -0.01 2.47 16 33 H 0.05 1.86 8.13 -2.39 -0.02 1.84 16 34 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.41 9.15 6.40 -92.71 -0.59 8.56 16 37 H 0.14 1.87 6.41 -2.91 -0.02 1.85 16 38 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 39 H 0.15 1.20 8.06 -2.91 -0.02 1.17 16 40 H 0.11 1.02 8.01 -2.39 -0.02 1.00 16 41 H 0.04 0.60 8.06 -2.39 -0.02 0.58 16 42 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.07 0.70 8.12 -2.38 -0.02 0.68 16 44 H 0.08 0.62 8.12 -2.39 -0.02 0.60 16 45 H 0.06 1.17 6.17 -2.39 -0.01 1.15 16 46 H 0.08 1.14 8.12 -2.38 -0.02 1.12 16 47 H 0.02 0.41 8.14 -2.38 -0.02 0.39 16 48 H 0.11 2.92 7.62 -2.91 -0.02 2.90 16 49 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 50 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 51 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 52 H 0.00 0.08 6.73 -2.39 -0.02 0.07 16 53 H 0.25 16.00 6.19 -92.71 -0.57 15.43 16 Total: -1.00 -71.60 414.58 0.72 -70.88 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.49 Total: 25.87 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 6.93 Total: -2.24 kcal Atomic # 7 Polarization: -115.73 SS G_CDS: -8.70 Total: -124.43 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.06 Total: -22.75 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 2.06 Total: 52.67 kcal Total: -71.60 0.72 -70.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087839248.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.336 kcal (2) G-P(sol) polarization free energy of solvation -71.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds