Wall clock time and date at job start Wed Apr 1 2020 04:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46931 * 2 1 4 4 H 1.08996 * 110.00176 * 302.38841 * 3 2 1 5 5 C 1.54324 * 109.88441 * 181.28850 * 3 2 1 6 6 H 1.09001 * 110.71745 * 336.93130 * 5 3 2 7 7 N 1.46501 * 110.71749 * 100.02608 * 5 3 2 8 8 C 1.34776 * 119.99487 * 202.55873 * 7 5 3 9 9 O 1.21593 * 120.00896 * 0.02562 * 8 7 5 10 10 C 1.47531 * 119.99621 * 180.02562 * 8 7 5 11 11 C 1.39793 * 120.06650 * 180.02562 * 10 8 7 12 12 C 1.37600 * 119.92765 * 180.02562 * 11 10 8 13 13 C 1.39222 * 120.07243 * 359.97438 * 12 11 10 14 14 N 1.39037 * 119.93306 * 180.02562 * 13 12 11 15 15 C 1.46505 * 119.99998 * 359.72116 * 14 13 12 16 16 C 1.46502 * 119.99987 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.47171 * 89.99763 * 16 14 13 18 18 C 1.39215 * 120.13527 * 0.26864 * 13 12 11 19 19 C 1.37610 * 120.06867 * 359.45686 * 18 13 12 20 20 C 1.55152 * 103.10372 * 218.47922 * 5 3 2 21 21 C 1.54912 * 101.58393 * 35.41281 * 20 5 3 22 22 N 1.47325 * 110.06453 * 63.55811 * 3 2 1 23 23 C 1.36939 * 125.61318 * 298.24944 * 22 3 2 24 24 H 1.07999 * 120.00003 * 326.21509 * 23 22 3 25 25 C 1.38812 * 120.00049 * 146.21339 * 23 22 3 26 26 N 1.31618 * 120.00244 * 162.09112 * 25 23 22 27 27 Si 1.86805 * 120.00025 * 342.09433 * 25 23 22 28 28 H 1.48499 * 109.47082 * 88.96568 * 27 25 23 29 29 H 1.48496 * 109.47414 * 208.96932 * 27 25 23 30 30 H 1.48507 * 109.46918 * 328.97231 * 27 25 23 31 31 H 1.09001 * 109.46648 * 172.18114 * 1 2 3 32 32 H 1.08997 * 109.47380 * 292.17794 * 1 2 3 33 33 H 1.08999 * 109.47287 * 52.18501 * 1 2 3 34 34 H 1.08995 * 109.47750 * 239.99767 * 2 1 3 35 35 H 1.09007 * 109.47349 * 119.99708 * 2 1 3 36 36 H 0.96994 * 120.00227 * 22.56502 * 7 5 3 37 37 H 1.08001 * 120.03424 * 0.03829 * 11 10 8 38 38 H 1.08011 * 119.96694 * 180.02562 * 12 11 10 39 39 H 1.08997 * 109.47037 * 90.00689 * 15 14 13 40 40 H 1.09003 * 109.46858 * 210.00303 * 15 14 13 41 41 H 1.08993 * 109.47044 * 329.99833 * 15 14 13 42 42 H 1.09006 * 109.46934 * 209.99723 * 16 14 13 43 43 H 1.08998 * 109.47105 * 329.99319 * 16 14 13 44 44 H 1.08999 * 109.47384 * 60.00327 * 17 16 14 45 45 H 1.09005 * 109.47114 * 179.97438 * 17 16 14 46 46 H 1.08993 * 109.47066 * 300.00075 * 17 16 14 47 47 H 1.08001 * 119.96660 * 179.70346 * 18 13 12 48 48 H 1.08004 * 120.03366 * 180.28930 * 19 18 13 49 49 H 1.09004 * 111.00670 * 153.48513 * 20 5 3 50 50 H 1.09006 * 111.00544 * 277.34074 * 20 5 3 51 51 H 1.09002 * 110.36474 * 81.82972 * 21 20 5 52 52 H 1.08999 * 110.36936 * 204.03984 * 21 20 5 53 53 H 0.96993 * 120.00037 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6469 1.9769 -0.8649 5 6 3.5828 1.4539 -0.0326 6 1 3.9835 0.5157 0.3514 7 7 4.0706 1.7063 -1.3908 8 6 5.3129 1.3203 -1.7431 9 8 6.0286 0.7620 -0.9341 10 6 5.8043 1.5750 -3.1106 11 6 7.0924 1.1747 -3.4778 12 6 7.5481 1.4142 -4.7539 13 6 6.7277 2.0539 -5.6791 14 7 7.1909 2.2940 -6.9679 15 6 8.5433 1.8793 -7.3493 16 6 6.3286 2.9665 -7.9428 17 6 6.5458 4.4786 -7.8581 18 6 5.4463 2.4582 -5.3149 19 6 4.9827 2.2166 -4.0420 20 6 3.9459 2.6323 0.9090 21 6 2.8350 2.5256 1.9834 22 7 1.6274 2.1245 1.2391 23 6 0.3354 2.3464 1.6349 24 1 -0.4301 2.5375 0.8974 25 6 0.0096 2.3258 2.9841 26 7 -1.1140 2.8720 3.3982 27 14 1.1659 1.5229 4.2121 28 1 2.1476 2.5263 4.6966 29 1 0.3832 1.0012 5.3611 30 1 1.8863 0.4031 3.5545 31 1 -0.3633 -1.0181 -0.1398 32 1 -0.3634 0.3879 0.9516 33 1 -0.3634 0.6301 -0.8118 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 3.4996 2.1513 -2.0363 37 1 7.7291 0.6778 -2.7608 38 1 8.5431 1.1048 -5.0385 39 1 8.5140 0.8641 -7.7450 40 1 8.9290 2.5556 -8.1122 41 1 9.1929 1.9099 -6.4747 42 1 6.5753 2.6196 -8.9463 43 1 5.2857 2.7364 -7.7250 44 1 7.5887 4.7087 -8.0760 45 1 5.9045 4.9790 -8.5838 46 1 6.2991 4.8255 -6.8547 47 1 4.8139 2.9586 -6.0334 48 1 3.9868 2.5264 -3.7615 49 1 4.9320 2.4896 1.3511 50 1 3.8897 3.5850 0.3822 51 1 3.0941 1.7678 2.7229 52 1 2.6815 3.4901 2.4675 53 1 -1.3419 2.8573 4.3409 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087846875.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:24 Heat of formation + Delta-G solvation = 2.995751 kcal Electronic energy + Delta-G solvation = -30528.265921 eV Core-core repulsion = 26592.693619 eV Total energy + Delta-G solvation = -3935.572301 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.37215 -40.39018 -39.32814 -37.24008 -35.65454 -34.17662 -33.92433 -32.81594 -31.75960 -31.34253 -30.29379 -28.58563 -27.24614 -26.16287 -24.71515 -23.79489 -23.20278 -22.76511 -21.81029 -21.38930 -20.72806 -19.05937 -18.89552 -17.87677 -17.52603 -17.01611 -16.81437 -16.12300 -15.95880 -15.79510 -15.63200 -15.34381 -15.22074 -14.91199 -14.73648 -14.61913 -14.40427 -14.12952 -14.03983 -13.83531 -13.58256 -13.37744 -13.36316 -13.25572 -13.01358 -12.90800 -12.89635 -12.68128 -12.58973 -12.32881 -12.09194 -11.99349 -11.97899 -11.71332 -11.61477 -11.50330 -11.41308 -10.91114 -10.82686 -10.63063 -10.01901 -9.94848 -8.82232 -8.26298 -8.15667 -5.50318 0.10828 0.51865 1.31382 1.39436 1.48822 1.97452 2.14688 2.17944 2.43663 3.01730 3.10033 3.32490 3.67454 3.80446 3.82545 3.91808 3.96793 4.11746 4.14511 4.26077 4.31231 4.35011 4.40743 4.43452 4.48113 4.52352 4.57969 4.62218 4.68069 4.70103 4.72979 4.88473 4.91745 4.94123 4.95179 4.96877 5.02306 5.09756 5.12317 5.16657 5.21766 5.26328 5.34946 5.39122 5.39886 5.52968 5.63041 5.75216 5.79459 5.88180 6.19457 6.30688 6.47684 6.62830 6.81746 7.30231 7.55889 8.18921 9.04056 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.020938 B = 0.002222 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.991524 B =12596.083879 C =13023.053943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C 0.154 3.846 4 H 0.061 0.939 5 C 0.148 3.852 6 H 0.081 0.919 7 N -0.703 5.703 8 C 0.563 3.437 9 O -0.591 6.591 10 C -0.218 4.218 11 C -0.020 4.020 12 C -0.214 4.214 13 C 0.242 3.758 14 N -0.625 5.625 15 C 0.082 3.918 16 C 0.110 3.890 17 C -0.170 4.170 18 C -0.210 4.210 19 C -0.030 4.030 20 C -0.127 4.127 21 C 0.112 3.888 22 N -0.613 5.613 23 C -0.203 4.203 24 H 0.064 0.936 25 C -0.022 4.022 26 N -0.951 5.951 27 Si 0.929 3.071 28 H -0.280 1.280 29 H -0.309 1.309 30 H -0.269 1.269 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.037 0.963 36 H 0.411 0.589 37 H 0.122 0.878 38 H 0.144 0.856 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.046 0.954 47 H 0.148 0.852 48 H 0.142 0.858 49 H 0.076 0.924 50 H 0.084 0.916 51 H 0.014 0.986 52 H 0.046 0.954 53 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.024 -0.155 -28.010 33.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C 0.048 3.952 4 H 0.078 0.922 5 C 0.042 3.958 6 H 0.099 0.901 7 N -0.354 5.354 8 C 0.354 3.646 9 O -0.473 6.473 10 C -0.224 4.224 11 C -0.040 4.040 12 C -0.237 4.237 13 C 0.136 3.864 14 N -0.332 5.332 15 C -0.060 4.060 16 C -0.013 4.013 17 C -0.228 4.228 18 C -0.233 4.233 19 C -0.049 4.049 20 C -0.167 4.167 21 C -0.013 4.013 22 N -0.339 5.339 23 C -0.332 4.332 24 H 0.082 0.918 25 C -0.217 4.217 26 N -0.597 5.597 27 Si 0.759 3.241 28 H -0.207 1.207 29 H -0.238 1.238 30 H -0.194 1.194 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.249 0.751 37 H 0.140 0.860 38 H 0.162 0.838 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.100 0.900 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.065 0.935 47 H 0.165 0.835 48 H 0.160 0.840 49 H 0.094 0.906 50 H 0.103 0.897 51 H 0.031 0.969 52 H 0.065 0.935 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 19.410 -0.457 -27.532 33.689 hybrid contribution -0.134 -0.198 1.287 1.309 sum 19.276 -0.655 -26.245 32.570 Atomic orbital electron populations 1.21782 0.95671 1.00160 1.02601 1.21831 0.96795 0.96874 1.00441 1.21423 0.90928 0.92498 0.90302 0.92176 1.21732 0.93416 0.98263 0.82401 0.90134 1.45724 1.15545 1.60935 1.13241 1.18608 0.80996 0.77054 0.87952 1.90724 1.57309 1.45093 1.54134 1.19528 0.97755 1.11766 0.93330 1.21002 0.93660 0.93646 0.95698 1.20759 1.01623 1.08174 0.93101 1.18179 0.92465 0.90654 0.85149 1.46743 1.15850 1.62070 1.08569 1.21864 0.81970 1.00538 1.01640 1.21658 0.95105 0.92163 0.92340 1.22190 1.02410 0.95997 1.02204 1.20818 0.95863 1.08948 0.97626 1.21224 0.98744 0.92790 0.92184 1.23026 0.97701 0.99183 0.96751 1.21934 0.87290 0.97439 0.94686 1.44868 1.01005 1.65333 1.22696 1.18299 0.84189 1.39485 0.91247 0.91810 1.25824 0.96910 1.00090 0.98886 1.69887 1.26618 1.47674 1.15544 0.86081 0.78695 0.80245 0.79078 1.20658 1.23792 1.19411 0.93139 0.92776 0.93236 0.90905 0.94427 0.75057 0.86004 0.83841 0.92384 0.89753 0.91010 0.88877 0.89969 0.92608 0.90287 0.93520 0.83475 0.84001 0.90583 0.89697 0.96871 0.93517 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.51 9.03 71.98 0.65 -4.86 16 2 C -0.12 -4.36 5.49 30.59 0.17 -4.19 16 3 C 0.15 5.72 3.03 45.28 0.14 5.85 16 4 H 0.06 2.08 7.70 -2.39 -0.02 2.06 16 5 C 0.15 4.97 2.79 46.18 0.13 5.10 16 6 H 0.08 3.01 7.33 -2.39 -0.02 2.99 16 7 N -0.70 -19.23 5.14 -440.08 -2.26 -21.49 16 8 C 0.56 16.89 7.76 86.69 0.67 17.57 16 9 O -0.59 -22.35 16.02 -4.01 -0.06 -22.41 16 10 C -0.22 -5.24 5.88 -20.07 -0.12 -5.36 16 11 C -0.02 -0.46 9.58 22.50 0.22 -0.24 16 12 C -0.21 -3.72 9.18 22.36 0.21 -3.51 16 13 C 0.24 3.74 6.55 38.47 0.25 3.99 16 14 N -0.62 -6.57 2.99 -722.21 -2.16 -8.73 16 15 C 0.08 0.53 10.17 127.77 1.30 1.83 16 16 C 0.11 0.74 5.86 86.38 0.51 1.24 16 17 C -0.17 -1.16 10.24 71.98 0.74 -0.42 16 18 C -0.21 -3.23 9.18 22.36 0.21 -3.02 16 19 C -0.03 -0.54 9.53 22.50 0.21 -0.33 16 20 C -0.13 -4.43 6.77 31.99 0.22 -4.22 16 21 C 0.11 4.80 4.98 86.86 0.43 5.24 16 22 N -0.61 -28.17 2.73 -667.54 -1.82 -29.99 16 23 C -0.20 -11.02 7.36 84.03 0.62 -10.40 16 24 H 0.06 3.73 7.81 -2.91 -0.02 3.71 16 25 C -0.02 -1.24 5.45 84.86 0.46 -0.78 16 26 N -0.95 -58.82 13.97 21.65 0.30 -58.52 16 27 Si 0.93 47.58 24.71 68.60 1.69 49.27 16 28 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 29 H -0.31 -16.08 7.11 99.48 0.71 -15.38 16 30 H -0.27 -13.53 6.77 99.48 0.67 -12.85 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 32 H 0.05 2.53 5.60 -2.39 -0.01 2.51 16 33 H 0.05 1.77 8.13 -2.39 -0.02 1.75 16 34 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.41 8.88 6.36 -92.71 -0.59 8.29 16 37 H 0.12 2.95 7.64 -2.91 -0.02 2.92 16 38 H 0.14 1.88 6.12 -2.90 -0.02 1.86 16 39 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.08 0.28 8.07 -2.39 -0.02 0.26 16 41 H 0.07 0.48 6.18 -2.39 -0.01 0.46 16 42 H 0.09 0.33 8.07 -2.38 -0.02 0.31 16 43 H 0.08 0.53 6.18 -2.39 -0.01 0.52 16 44 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.08 0.35 8.14 -2.38 -0.02 0.33 16 46 H 0.05 0.47 8.14 -2.39 -0.02 0.46 16 47 H 0.15 1.61 6.12 -2.91 -0.02 1.59 16 48 H 0.14 1.99 6.39 -2.91 -0.02 1.97 16 49 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 50 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 51 H 0.01 0.62 5.29 -2.39 -0.01 0.60 16 52 H 0.05 2.10 7.99 -2.39 -0.02 2.08 16 53 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -72.09 407.93 2.98 -69.11 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.28 Total: 19.28 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 7.00 Total: 3.49 kcal Atomic # 7 Polarization: -112.80 SS G_CDS: -5.94 Total: -118.74 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.06 Total: -22.41 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 1.69 Total: 49.27 kcal Total: -72.09 2.98 -69.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087846875.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.107 kcal (2) G-P(sol) polarization free energy of solvation -72.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds