Wall clock time and date at job start Wed Apr 1 2020 04:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 N 1.46505 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.46496 * 119.99619 * 89.99960 * 4 3 2 6 6 C 1.39037 * 120.00070 * 270.00116 * 4 3 2 7 7 C 1.39218 * 119.93279 * 359.72694 * 6 4 3 8 8 C 1.37609 * 120.07193 * 179.72392 * 7 6 4 9 9 C 1.39796 * 119.92603 * 0.55308 * 8 7 6 10 10 C 1.47520 * 120.06842 * 179.70357 * 9 8 7 11 11 O 1.21590 * 120.00092 * 180.02562 * 10 9 8 12 12 N 1.34774 * 119.99727 * 0.02562 * 10 9 8 13 13 C 1.46504 * 119.99930 * 180.02562 * 12 10 9 14 14 H 1.09004 * 110.63624 * 328.13474 * 13 12 10 15 15 C 1.55145 * 110.72264 * 91.47778 * 13 12 10 16 16 C 1.54914 * 101.58286 * 153.86569 * 15 13 12 17 17 N 1.47421 * 104.83024 * 322.99095 * 16 15 13 18 18 C 1.36937 * 125.64465 * 204.09240 * 17 16 15 19 19 H 1.08005 * 120.00017 * 180.02562 * 18 17 16 20 20 C 1.38808 * 120.00315 * 0.04264 * 18 17 16 21 21 N 1.31627 * 119.99857 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00174 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47407 * 59.99976 * 22 20 18 24 24 H 1.48504 * 109.47327 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47356 * 299.99954 * 22 20 18 26 26 C 1.47020 * 108.70500 * 24.12839 * 17 16 15 27 27 H 1.08996 * 109.87973 * 239.52376 * 26 17 16 28 28 C 1.52995 * 110.00874 * 118.42997 * 26 17 16 29 29 C 1.39799 * 119.86391 * 359.71983 * 9 8 7 30 30 C 1.37606 * 119.93171 * 359.97438 * 29 9 8 31 31 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 33 33 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 35 35 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 36 36 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 37 37 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 38 38 H 1.09004 * 109.47335 * 90.00404 * 5 4 3 39 39 H 1.09006 * 109.47349 * 209.99918 * 5 4 3 40 40 H 1.09003 * 109.47665 * 330.00083 * 5 4 3 41 41 H 1.08009 * 119.96478 * 359.97438 * 7 6 4 42 42 H 1.07998 * 120.03375 * 180.29358 * 8 7 6 43 43 H 0.97005 * 120.00366 * 0.02562 * 12 10 9 44 44 H 1.09001 * 111.00215 * 271.94099 * 15 13 12 45 45 H 1.08998 * 111.00597 * 35.78889 * 15 13 12 46 46 H 1.09000 * 110.36569 * 204.15086 * 16 15 13 47 47 H 1.09003 * 110.45602 * 81.87698 * 16 15 13 48 48 H 0.96997 * 119.99670 * 180.02562 * 21 20 18 49 49 H 1.08993 * 109.47328 * 302.11155 * 28 26 17 50 50 H 1.09003 * 109.47436 * 62.11819 * 28 26 17 51 51 H 1.09003 * 109.46927 * 182.11252 * 28 26 17 52 52 H 1.07995 * 120.03248 * 180.02562 * 29 9 8 53 53 H 1.07998 * 119.96765 * 179.97438 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2380 1.4421 -1.2678 6 6 4.1997 1.4425 1.2050 7 6 3.5018 1.4484 2.4096 8 6 4.1864 1.4428 3.6032 9 6 5.5843 1.4429 3.6054 10 6 6.3214 1.4435 4.8833 11 8 7.5373 1.4440 4.8838 12 7 5.6471 1.4435 6.0502 13 6 6.3791 1.4447 7.3192 14 1 7.3219 0.9068 7.2194 15 6 6.6198 2.8957 7.8128 16 6 6.7370 2.6881 9.3435 17 7 5.7565 1.6330 9.6574 18 6 5.1652 1.4300 10.8758 19 1 4.4564 0.6254 11.0047 20 6 5.4766 2.2586 11.9451 21 7 6.3405 3.2391 11.7880 22 14 4.6695 1.9821 13.6068 23 1 5.0027 0.6211 14.0987 24 1 5.1680 2.9931 14.5736 25 1 3.1966 2.1118 13.4695 26 6 5.5192 0.8344 8.4461 27 1 4.4648 0.8790 8.1734 28 6 5.9329 -0.6186 8.6877 29 6 6.2824 1.4427 2.3942 30 6 5.5920 1.4419 1.2039 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5139 0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 4.4199 2.4698 -1.5826 39 1 5.1904 0.9283 -1.1371 40 1 3.6492 0.9282 -2.0277 41 1 2.4217 1.4534 2.4072 42 1 3.6443 1.4427 4.5373 43 1 4.6770 1.4427 6.0498 44 1 7.5447 3.2999 7.4013 45 1 5.7726 3.5368 7.5692 46 1 6.4864 3.6083 9.8714 47 1 7.7430 2.3620 9.6078 48 1 6.5584 3.8178 12.5354 49 1 6.9831 -0.6540 8.9773 50 1 5.3217 -1.0429 9.4843 51 1 5.7886 -1.1943 7.7734 52 1 7.3623 1.4423 2.3927 53 1 6.1306 1.4422 0.2678 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089077705.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:04 Heat of formation + Delta-G solvation = 2.521949 kcal Electronic energy + Delta-G solvation = -30037.126683 eV Core-core repulsion = 26101.533836 eV Total energy + Delta-G solvation = -3935.592847 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.33910 -40.32021 -39.11190 -37.41849 -35.61435 -34.40356 -33.79990 -32.08134 -31.98381 -31.24886 -30.11068 -28.39596 -26.91000 -25.96492 -25.61440 -23.47821 -23.19809 -22.29501 -21.82689 -21.48866 -20.87123 -19.05433 -18.69565 -17.88185 -17.45140 -16.88216 -16.48191 -16.02596 -15.92427 -15.71641 -15.69379 -15.61281 -15.24790 -14.82583 -14.74197 -14.45578 -14.30302 -13.99451 -13.91514 -13.75399 -13.35524 -13.31802 -13.23168 -13.04788 -12.93007 -12.76948 -12.70376 -12.64947 -12.59010 -12.23118 -12.19843 -12.09027 -12.01489 -11.74686 -11.56454 -11.51809 -11.42744 -10.90741 -10.79202 -10.70603 -9.99578 -9.95200 -8.88802 -8.26196 -7.72787 -5.18203 0.10325 0.51389 1.49136 1.52386 1.58466 1.97475 2.13941 2.19495 2.54366 3.01410 3.37174 3.58361 3.79701 3.86505 3.91545 3.95332 3.98446 4.06692 4.11675 4.22427 4.30052 4.39899 4.46069 4.48593 4.50492 4.60537 4.63213 4.67222 4.68999 4.72640 4.76492 4.81602 4.92738 4.95456 4.97083 5.06234 5.08873 5.14049 5.22162 5.22708 5.26151 5.35639 5.37433 5.46486 5.50661 5.53383 5.61058 5.65943 5.78807 5.81335 6.30066 6.31814 6.47172 6.63790 7.12489 7.30860 7.80216 8.44473 9.28975 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.016747 B = 0.002062 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.521234 B =13576.564596 C =14602.927565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.115 3.885 4 N -0.624 5.624 5 C 0.082 3.918 6 C 0.243 3.757 7 C -0.209 4.209 8 C -0.031 4.031 9 C -0.218 4.218 10 C 0.561 3.439 11 O -0.593 6.593 12 N -0.703 5.703 13 C 0.152 3.848 14 H 0.078 0.922 15 C -0.139 4.139 16 C 0.158 3.842 17 N -0.613 5.613 18 C -0.227 4.227 19 H 0.086 0.914 20 C -0.071 4.071 21 N -0.952 5.952 22 Si 0.980 3.020 23 H -0.280 1.280 24 H -0.297 1.297 25 H -0.274 1.274 26 C 0.151 3.849 27 H 0.053 0.947 28 C -0.146 4.146 29 C -0.020 4.020 30 C -0.212 4.212 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.410 0.590 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.079 0.921 47 H -0.016 1.016 48 H 0.246 0.754 49 H 0.034 0.966 50 H 0.049 0.951 51 H 0.068 0.932 52 H 0.122 0.878 53 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.055 -4.934 -30.541 33.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C -0.007 4.007 4 N -0.330 5.330 5 C -0.060 4.060 6 C 0.136 3.864 7 C -0.231 4.231 8 C -0.050 4.050 9 C -0.224 4.224 10 C 0.352 3.648 11 O -0.475 6.475 12 N -0.354 5.354 13 C 0.046 3.954 14 H 0.096 0.904 15 C -0.178 4.178 16 C 0.033 3.967 17 N -0.338 5.338 18 C -0.356 4.356 19 H 0.104 0.896 20 C -0.263 4.263 21 N -0.601 5.601 22 Si 0.809 3.191 23 H -0.206 1.206 24 H -0.224 1.224 25 H -0.200 1.200 26 C 0.044 3.956 27 H 0.070 0.930 28 C -0.206 4.206 29 C -0.040 4.040 30 C -0.235 4.235 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.165 0.835 42 H 0.159 0.841 43 H 0.248 0.752 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.097 0.903 47 H 0.002 0.998 48 H 0.055 0.945 49 H 0.054 0.946 50 H 0.068 0.932 51 H 0.087 0.913 52 H 0.140 0.860 53 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.340 -4.850 -30.536 32.932 hybrid contribution -0.085 -0.017 1.399 1.402 sum -11.425 -4.867 -29.136 31.673 Atomic orbital electron populations 1.21695 0.94321 1.02209 1.02502 1.21909 0.96699 0.97070 1.02088 1.21733 0.77996 0.97017 1.03989 1.46685 1.05785 1.77400 1.03174 1.21876 0.97648 1.02153 0.84346 1.18160 0.91254 0.90155 0.86789 1.20802 1.00757 1.11281 0.90296 1.21211 0.91917 0.92830 0.99044 1.19533 0.94355 1.16412 0.92057 1.18656 0.86838 0.74777 0.84529 1.90718 1.15538 1.52945 1.88287 1.45750 1.10583 1.74638 1.04447 1.21715 0.95147 0.96156 0.82353 0.90395 1.23198 1.01205 0.96476 0.96947 1.21669 0.90013 0.94330 0.90733 1.44719 1.48889 1.33457 1.06768 1.19364 1.18342 1.11473 0.86384 0.89632 1.25643 1.00546 0.98378 1.01732 1.70047 1.38307 1.21148 1.30646 0.85121 0.78107 0.76811 0.79093 1.20641 1.22384 1.20010 1.21187 0.96950 0.91162 0.86265 0.92970 1.22120 1.00461 0.96891 1.01101 1.21005 1.00003 0.92018 0.90974 1.20757 0.92359 1.11868 0.98489 0.92270 0.91750 0.92578 0.91891 0.92862 0.90122 0.88953 0.92400 0.90910 0.89707 0.83498 0.84147 0.75206 0.91820 0.91113 0.90326 0.99766 0.94459 0.94640 0.93169 0.91291 0.86023 0.83686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 71.98 0.71 -0.22 16 2 C -0.14 -1.11 6.26 30.59 0.19 -0.92 16 3 C 0.12 0.89 5.15 86.38 0.45 1.34 16 4 N -0.62 -7.00 2.99 -722.20 -2.16 -9.16 16 5 C 0.08 0.58 10.17 127.77 1.30 1.88 16 6 C 0.24 3.99 6.55 38.47 0.25 4.24 16 7 C -0.21 -3.47 9.18 22.36 0.21 -3.27 16 8 C -0.03 -0.61 9.53 22.50 0.21 -0.39 16 9 C -0.22 -5.69 5.88 -20.08 -0.12 -5.81 16 10 C 0.56 18.51 7.76 86.69 0.67 19.18 16 11 O -0.59 -24.33 15.98 -4.00 -0.06 -24.40 16 12 N -0.70 -21.69 5.13 -440.09 -2.26 -23.95 16 13 C 0.15 5.79 2.85 46.18 0.13 5.93 16 14 H 0.08 3.26 7.25 -2.38 -0.02 3.25 16 15 C -0.14 -5.80 6.77 31.98 0.22 -5.58 16 16 C 0.16 8.17 5.89 86.86 0.51 8.68 16 17 N -0.61 -31.36 3.13 -668.27 -2.09 -33.45 16 18 C -0.23 -12.48 9.89 84.03 0.83 -11.65 16 19 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 20 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 21 N -0.95 -57.35 10.09 21.65 0.22 -57.14 16 22 Si 0.98 45.67 29.55 68.60 2.03 47.70 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 24 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 26 C 0.15 6.12 3.47 45.34 0.16 6.28 16 27 H 0.05 1.96 7.72 -2.39 -0.02 1.95 16 28 C -0.15 -5.47 9.14 71.98 0.66 -4.81 16 29 C -0.02 -0.49 9.58 22.50 0.22 -0.27 16 30 C -0.21 -3.91 9.18 22.36 0.21 -3.71 16 31 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.08 0.63 6.16 -2.39 -0.01 0.62 16 37 H 0.09 0.44 8.07 -2.39 -0.02 0.42 16 38 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.07 0.52 6.17 -2.38 -0.01 0.50 16 40 H 0.08 0.32 8.07 -2.39 -0.02 0.30 16 41 H 0.15 1.78 6.11 -2.91 -0.02 1.77 16 42 H 0.14 2.25 6.39 -2.91 -0.02 2.23 16 43 H 0.41 10.16 6.39 -92.70 -0.59 9.57 16 44 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 45 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 46 H 0.08 4.56 5.87 -2.39 -0.01 4.54 16 47 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 48 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 49 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.05 1.89 8.05 -2.39 -0.02 1.87 16 51 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 52 H 0.12 3.15 7.64 -2.91 -0.02 3.12 16 53 H 0.15 2.01 6.11 -2.91 -0.02 1.99 16 Total: -1.00 -72.41 416.54 3.25 -69.16 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.31 Total: 23.89 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 7.27 Total: 7.35 kcal Atomic # 7 Polarization: -117.41 SS G_CDS: -6.29 Total: -123.70 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.06 Total: -24.40 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -72.41 3.25 -69.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089077705.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.679 kcal (2) G-P(sol) polarization free energy of solvation -72.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds