Wall clock time and date at job start Wed Apr 1 2020 04:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46998 * 2 1 4 4 N 1.46500 * 109.47168 * 179.97438 * 3 2 1 5 5 C 1.46498 * 120.00115 * 270.00380 * 4 3 2 6 6 C 1.39046 * 120.00041 * 89.99985 * 4 3 2 7 7 C 1.39217 * 119.93668 * 180.02562 * 6 4 3 8 8 C 1.37610 * 120.07351 * 180.02562 * 7 6 4 9 9 C 1.39798 * 119.92785 * 359.97438 * 8 7 6 10 10 C 1.47516 * 120.06726 * 179.97438 * 9 8 7 11 11 O 1.21601 * 119.99954 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00019 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99873 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47035 * 179.97438 * 13 12 10 15 15 C 1.53784 * 113.61168 * 274.13488 * 14 13 12 16 16 C 1.53951 * 87.01629 * 220.04779 * 15 14 13 17 17 N 1.46504 * 113.74205 * 139.94735 * 16 15 14 18 18 C 1.36932 * 120.00275 * 107.39800 * 17 16 15 19 19 H 1.08002 * 119.99861 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00338 * 179.97438 * 18 17 16 21 21 N 1.31620 * 120.00525 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99715 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47053 * 89.99537 * 22 20 18 24 24 H 1.48505 * 109.46955 * 209.99564 * 22 20 18 25 25 H 1.48499 * 109.47014 * 329.99528 * 22 20 18 26 26 C 1.53772 * 87.11347 * 25.36206 * 16 15 14 27 27 C 1.39799 * 119.86222 * 0.25462 * 9 8 7 28 28 C 1.37609 * 119.93149 * 359.50893 * 27 9 8 29 29 H 1.09007 * 109.47014 * 60.00102 * 1 2 3 30 30 H 1.08993 * 109.47171 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47273 * 300.00158 * 1 2 3 32 32 H 1.08998 * 109.47355 * 240.00324 * 2 1 3 33 33 H 1.08995 * 109.47030 * 120.00279 * 2 1 3 34 34 H 1.08999 * 109.46949 * 60.00518 * 3 2 1 35 35 H 1.08995 * 109.47458 * 300.00017 * 3 2 1 36 36 H 1.08998 * 109.47335 * 269.99855 * 5 4 3 37 37 H 1.09002 * 109.47316 * 30.00230 * 5 4 3 38 38 H 1.09001 * 109.46974 * 149.99735 * 5 4 3 39 39 H 1.08006 * 119.96112 * 0.02570 * 7 6 4 40 40 H 1.07995 * 120.03678 * 179.97438 * 8 7 6 41 41 H 0.96999 * 120.00047 * 359.97438 * 12 10 9 42 42 H 1.09004 * 109.47073 * 299.99562 * 13 12 10 43 43 H 1.09000 * 109.47212 * 59.99645 * 13 12 10 44 44 H 1.08999 * 112.84703 * 45.32647 * 14 13 12 45 45 H 1.08998 * 113.61528 * 334.56969 * 15 14 13 46 46 H 1.09002 * 113.61529 * 105.47075 * 15 14 13 47 47 H 1.09001 * 113.53832 * 270.80886 * 16 15 14 48 48 H 0.96995 * 119.99648 * 287.39808 * 17 16 15 49 49 H 0.97003 * 120.00165 * 180.02562 * 21 20 18 50 50 H 1.09001 * 113.61872 * 220.08438 * 26 16 15 51 51 H 1.09004 * 113.61309 * 89.18616 * 26 16 15 52 52 H 1.08004 * 120.02963 * 179.74365 * 27 9 8 53 53 H 1.07997 * 119.96623 * 180.21272 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.2370 1.4427 1.2696 6 6 4.2007 1.4424 -1.2033 7 6 5.5929 1.4419 -1.2011 8 6 6.2843 1.4423 -2.3909 9 6 5.5872 1.4426 -3.6027 10 6 6.3253 1.4436 -4.8799 11 8 7.5413 1.4446 -4.8794 12 7 5.6518 1.4444 -6.0474 13 6 6.3849 1.4448 -7.3159 14 6 5.3911 1.4451 -8.4792 15 6 4.9138 0.0398 -8.8820 16 6 5.0142 0.5123 -10.3437 17 7 5.5564 -0.4990 -11.2546 18 6 4.7313 -1.1293 -12.1472 19 1 3.6808 -0.8807 -12.1801 20 6 5.2451 -2.0871 -13.0106 21 7 4.4520 -2.6927 -13.8690 22 14 7.0622 -2.5166 -12.9543 23 1 7.2788 -3.6265 -11.9918 24 1 7.5134 -2.9376 -14.3050 25 1 7.8388 -1.3272 -12.5213 26 6 6.0603 1.5309 -9.8610 27 6 4.1892 1.4480 -3.6015 28 6 3.5036 1.4427 -2.4084 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 4.4185 2.4704 1.5843 37 1 3.6476 0.9289 2.0291 38 1 5.1894 0.9288 1.1397 39 1 6.1309 1.4412 -0.2646 40 1 7.3643 1.4423 -2.3886 41 1 4.6819 1.4440 -6.0478 42 1 7.0119 2.3347 -7.3729 43 1 7.0113 0.5547 -7.3738 44 1 4.5792 2.1594 -8.3421 45 1 5.6205 -0.7505 -8.6290 46 1 3.8956 -0.1835 -8.5633 47 1 4.0984 0.9706 -10.7170 48 1 6.4999 -0.7220 -11.2253 49 1 4.8111 -3.3622 -14.4720 50 1 5.9665 2.5096 -10.3317 51 1 7.0811 1.1489 -9.8763 52 1 3.6479 1.4524 -4.5361 53 1 2.4236 1.4433 -2.4069 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091392737.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:01 Heat of formation + Delta-G solvation = 2.865814 kcal Electronic energy + Delta-G solvation = -28951.680993 eV Core-core repulsion = 25016.103057 eV Total energy + Delta-G solvation = -3935.577936 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.29160 -40.35840 -39.66423 -37.46759 -36.12540 -35.05527 -34.34180 -32.78315 -32.00868 -31.20681 -28.70231 -28.41419 -26.46352 -26.26117 -25.39187 -23.48273 -23.21455 -22.41841 -22.03442 -21.15339 -20.64876 -19.39244 -19.08279 -17.86372 -17.41044 -16.81069 -16.49498 -16.39035 -16.08587 -15.96226 -15.84128 -15.64735 -15.40138 -14.81030 -14.79532 -14.65292 -14.46099 -14.38994 -13.96168 -13.91811 -13.43610 -13.33742 -13.24459 -13.15556 -13.07618 -13.01149 -12.78388 -12.68715 -12.64953 -12.21360 -12.15091 -11.91220 -11.76617 -11.70292 -11.57693 -11.53327 -11.14367 -10.91478 -10.81934 -10.81455 -10.05555 -9.97246 -9.25797 -8.28176 -8.02342 -5.34336 0.08419 0.49407 1.37818 1.39995 1.47152 1.95381 2.12393 2.25586 2.48071 2.99708 3.28167 3.59880 3.71963 3.78669 3.79716 3.89551 3.99046 4.04623 4.09805 4.10672 4.27104 4.30110 4.37296 4.39931 4.44898 4.46944 4.56744 4.59285 4.65514 4.70673 4.74578 4.78878 4.91229 4.94900 4.96734 4.98668 5.04540 5.06610 5.20701 5.21023 5.22991 5.24604 5.34728 5.34858 5.44766 5.46023 5.52893 5.67537 5.77276 5.79023 6.23740 6.27802 6.45319 6.61681 7.08614 7.28569 7.87244 8.04803 9.19099 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014460 B = 0.001761 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.924950 B =15898.032168 C =17028.954449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.116 3.884 4 N -0.624 5.624 5 C 0.082 3.918 6 C 0.242 3.758 7 C -0.215 4.215 8 C -0.022 4.022 9 C -0.222 4.222 10 C 0.557 3.443 11 O -0.596 6.596 12 N -0.713 5.713 13 C 0.138 3.862 14 C -0.097 4.097 15 C -0.155 4.155 16 C 0.146 3.854 17 N -0.744 5.744 18 C -0.230 4.230 19 H 0.061 0.939 20 C -0.066 4.066 21 N -0.984 5.984 22 Si 0.952 3.048 23 H -0.282 1.282 24 H -0.296 1.296 25 H -0.253 1.253 26 C -0.136 4.136 27 C -0.029 4.029 28 C -0.211 4.211 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.143 0.857 40 H 0.121 0.879 41 H 0.412 0.588 42 H 0.066 0.934 43 H 0.049 0.951 44 H 0.120 0.880 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.080 0.920 48 H 0.364 0.636 49 H 0.257 0.743 50 H 0.082 0.918 51 H 0.075 0.925 52 H 0.145 0.855 53 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.872 13.227 36.896 39.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C -0.007 4.007 4 N -0.331 5.331 5 C -0.060 4.060 6 C 0.135 3.865 7 C -0.237 4.237 8 C -0.042 4.042 9 C -0.227 4.227 10 C 0.347 3.653 11 O -0.479 6.479 12 N -0.364 5.364 13 C 0.014 3.986 14 C -0.116 4.116 15 C -0.195 4.195 16 C 0.037 3.963 17 N -0.385 5.385 18 C -0.361 4.361 19 H 0.079 0.921 20 C -0.257 4.257 21 N -0.634 5.634 22 Si 0.779 3.221 23 H -0.208 1.208 24 H -0.223 1.223 25 H -0.178 1.178 26 C -0.175 4.175 27 C -0.049 4.049 28 C -0.233 4.233 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.161 0.839 40 H 0.139 0.861 41 H 0.250 0.750 42 H 0.084 0.916 43 H 0.068 0.932 44 H 0.138 0.862 45 H 0.081 0.919 46 H 0.086 0.914 47 H 0.098 0.902 48 H 0.198 0.802 49 H 0.066 0.934 50 H 0.101 0.899 51 H 0.093 0.907 52 H 0.163 0.837 53 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.336 13.190 36.944 39.589 hybrid contribution 0.763 -0.912 -0.624 1.343 sum -4.573 12.277 36.320 38.610 Atomic orbital electron populations 1.21697 0.94303 1.02173 1.02565 1.21917 0.96729 0.97196 1.02009 1.21728 0.77968 0.96883 1.04073 1.46700 1.05799 1.77347 1.03224 1.21872 0.97614 1.02186 0.84368 1.18187 0.91253 0.90182 0.86840 1.20763 0.92393 1.11962 0.98572 1.21009 0.99958 0.92107 0.91108 1.19584 0.94414 1.16397 0.92336 1.18622 0.86764 0.75061 0.84811 1.90727 1.15619 1.53143 1.88439 1.45804 1.11018 1.74648 1.04978 1.21257 0.94332 1.01303 0.81726 1.22474 0.98528 0.98179 0.92425 1.23767 1.01117 0.96192 0.98467 1.21966 0.96653 0.89297 0.88354 1.42804 1.07421 1.46215 1.42077 1.19142 0.92427 1.14472 1.10088 0.92120 1.25487 1.02062 0.99663 0.98514 1.69876 1.36387 1.31077 1.26083 0.85454 0.81250 0.78714 0.76642 1.20818 1.22260 1.17757 1.23350 0.98917 1.00106 0.95141 1.21230 0.91869 0.92720 0.99063 1.20830 1.00798 1.11268 0.90388 0.92151 0.92732 0.91700 0.92933 0.92030 0.88951 0.89914 0.92265 0.89824 0.91003 0.83899 0.86120 0.74993 0.91566 0.93243 0.86155 0.91856 0.91403 0.90230 0.80249 0.93438 0.89889 0.90653 0.83701 0.83525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 71.98 0.71 -0.11 16 2 C -0.14 -1.01 6.26 30.60 0.19 -0.81 16 3 C 0.12 0.73 5.15 86.38 0.44 1.17 16 4 N -0.62 -6.03 2.99 -722.21 -2.16 -8.19 16 5 C 0.08 0.47 10.18 127.77 1.30 1.77 16 6 C 0.24 3.47 6.55 38.47 0.25 3.72 16 7 C -0.21 -3.50 9.18 22.36 0.21 -3.29 16 8 C -0.02 -0.47 9.58 22.50 0.22 -0.25 16 9 C -0.22 -4.92 5.88 -20.08 -0.12 -5.04 16 10 C 0.56 15.21 7.76 86.69 0.67 15.88 16 11 O -0.60 -21.27 16.34 -4.03 -0.07 -21.33 16 12 N -0.71 -15.81 5.51 -466.26 -2.57 -18.38 16 13 C 0.14 3.37 5.50 86.38 0.47 3.85 16 14 C -0.10 -2.22 3.75 -10.27 -0.04 -2.26 16 15 C -0.15 -4.63 7.45 31.18 0.23 -4.40 16 16 C 0.15 5.23 4.48 45.57 0.20 5.44 16 17 N -0.74 -34.63 5.21 -320.18 -1.67 -36.30 16 18 C -0.23 -13.13 10.45 84.03 0.88 -12.25 16 19 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 20 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 21 N -0.98 -63.57 13.97 21.65 0.30 -63.27 16 22 Si 0.95 46.46 27.74 68.60 1.90 48.36 16 23 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 25 H -0.25 -11.21 6.52 99.48 0.65 -10.56 16 26 C -0.14 -3.76 7.39 31.12 0.23 -3.53 16 27 C -0.03 -0.47 9.53 22.50 0.21 -0.26 16 28 C -0.21 -2.93 9.18 22.36 0.21 -2.73 16 29 H 0.06 0.31 8.14 -2.38 -0.02 0.29 16 30 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.09 0.31 8.07 -2.39 -0.02 0.29 16 35 H 0.08 0.49 6.17 -2.39 -0.01 0.47 16 36 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.08 0.24 8.07 -2.39 -0.02 0.22 16 38 H 0.07 0.43 6.17 -2.39 -0.01 0.42 16 39 H 0.14 1.74 6.11 -2.91 -0.02 1.72 16 40 H 0.12 2.78 7.64 -2.91 -0.02 2.76 16 41 H 0.41 6.63 6.49 -92.71 -0.60 6.02 16 42 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.05 1.43 7.87 -2.39 -0.02 1.41 16 44 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.06 2.10 7.92 -2.39 -0.02 2.09 16 46 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.08 2.90 8.10 -2.39 -0.02 2.88 16 48 H 0.36 16.53 5.79 -92.71 -0.54 16.00 16 49 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 50 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 51 H 0.07 2.18 8.08 -2.38 -0.02 2.16 16 52 H 0.15 1.61 6.39 -2.91 -0.02 1.59 16 53 H 0.15 1.42 6.11 -2.91 -0.02 1.40 16 Total: -1.00 -77.18 422.92 2.20 -74.98 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: -0.28 Total: 30.70 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 6.74 Total: -6.57 kcal Atomic # 7 Polarization: -120.04 SS G_CDS: -6.09 Total: -126.13 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.07 Total: -21.33 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.90 Total: 48.36 kcal Total: -77.18 2.20 -74.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091392737.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.842 kcal (2) G-P(sol) polarization free energy of solvation -77.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds