Wall clock time and date at job start Wed Apr 1 2020 03:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47062 * 2 1 4 4 C 1.53008 * 109.46760 * 240.00373 * 2 1 3 5 5 N 1.46497 * 109.47215 * 60.00065 * 4 2 1 6 6 C 1.36929 * 120.00503 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99363 * 359.97438 * 6 5 4 8 8 C 1.38814 * 120.00617 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00165 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99732 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46985 * 90.00168 * 10 8 6 12 12 H 1.48503 * 109.47286 * 209.99999 * 10 8 6 13 13 H 1.48500 * 109.47399 * 330.00355 * 10 8 6 14 14 C 1.52999 * 109.47466 * 120.00397 * 2 1 3 15 15 C 1.53035 * 109.45926 * 299.99720 * 14 2 1 16 16 C 1.53191 * 109.31327 * 181.37380 * 15 14 2 17 17 N 1.46926 * 108.89109 * 305.29292 * 16 15 14 18 18 C 1.34773 * 120.63302 * 233.67613 * 17 16 15 19 19 O 1.21283 * 119.99890 * 359.97438 * 18 17 16 20 20 C 1.50700 * 120.00452 * 180.02562 * 18 17 16 21 21 C 1.50694 * 109.47448 * 179.97438 * 20 18 17 22 22 C 1.38672 * 120.41641 * 89.99663 * 21 20 18 23 23 C 1.38633 * 118.41820 * 180.02562 * 22 21 20 24 24 C 1.38223 * 119.16291 * 0.02562 * 23 22 21 25 25 N 1.31854 * 120.76232 * 0.02562 * 24 23 22 26 26 C 1.31879 * 121.72685 * 359.69780 * 25 24 23 27 27 C 1.47207 * 118.55531 * 53.54119 * 17 16 15 28 28 C 1.53038 * 109.44764 * 60.06182 * 14 2 1 29 29 H 1.09007 * 109.46450 * 299.99726 * 1 2 3 30 30 H 1.08993 * 109.47053 * 59.99776 * 1 2 3 31 31 H 1.08996 * 109.46765 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47222 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47084 * 300.00465 * 3 2 1 34 34 H 1.08998 * 109.47209 * 60.00627 * 3 2 1 35 35 H 1.08998 * 109.47086 * 179.97438 * 4 2 1 36 36 H 1.08996 * 109.47222 * 299.99402 * 4 2 1 37 37 H 0.97001 * 120.00106 * 359.97438 * 5 4 2 38 38 H 0.97002 * 120.00211 * 179.97438 * 9 8 6 39 39 H 1.09004 * 109.45591 * 180.02562 * 14 2 1 40 40 H 1.09003 * 109.49576 * 61.42048 * 15 14 2 41 41 H 1.09000 * 109.52700 * 301.34097 * 15 14 2 42 42 H 1.09002 * 109.58786 * 65.15336 * 16 15 14 43 43 H 1.08996 * 109.58870 * 185.43616 * 16 15 14 44 44 H 1.08998 * 109.46962 * 300.00024 * 20 18 17 45 45 H 1.09003 * 109.46750 * 59.99342 * 20 18 17 46 46 H 1.08002 * 120.79494 * 359.97438 * 22 21 20 47 47 H 1.08003 * 120.41916 * 180.02562 * 23 22 21 48 48 H 1.08000 * 119.61658 * 179.97438 * 24 23 22 49 49 H 1.08001 * 119.62133 * 180.31646 * 26 25 24 50 50 H 1.08996 * 109.53610 * 186.67231 * 27 17 16 51 51 H 1.09002 * 109.68003 * 66.36699 * 27 17 16 52 52 H 1.09002 * 109.49557 * 298.57093 * 28 14 2 53 53 H 1.08996 * 109.50003 * 58.66990 * 28 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 1.5516 -0.0305 -2.4455 6 6 1.8818 -0.4985 -3.6892 7 1 2.5027 -1.3767 -3.7884 8 6 1.4187 0.1556 -4.8226 9 7 1.7357 -0.2946 -6.0180 10 14 0.3442 1.6740 -4.6510 11 1 1.2024 2.8851 -4.6059 12 1 -0.5765 1.7628 -5.8128 13 1 -0.4474 1.5813 -3.3980 14 6 2.0401 -0.7213 1.2492 15 6 1.5299 0.0002 2.4986 16 6 2.0706 -0.7043 3.7468 17 7 1.7082 -2.1268 3.6847 18 6 1.0548 -2.7143 4.7066 19 8 0.7608 -2.0679 5.6899 20 6 0.6905 -4.1745 4.6282 21 6 -0.0274 -4.5816 5.8890 22 6 -1.4080 -4.4832 5.9737 23 6 -2.0258 -4.8687 7.1534 24 6 -1.2505 -5.3344 8.1987 25 7 0.0605 -5.4134 8.0830 26 6 0.6813 -5.0607 6.9742 27 6 2.0716 -2.8936 2.4818 28 6 1.5310 -2.1645 1.2478 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 3.1299 -0.7209 -1.2497 36 1 1.6767 -1.7489 -1.2494 37 1 0.9937 0.7579 -2.3564 38 1 1.4118 0.1623 -6.8100 39 1 3.1301 -0.7207 1.2491 40 1 0.4402 -0.0215 2.5118 41 1 1.8730 1.0348 2.4874 42 1 3.1555 -0.6047 3.7815 43 1 1.6337 -0.2545 4.6384 44 1 0.0403 -4.3410 3.7694 45 1 1.5971 -4.7696 4.5183 46 1 -1.9882 -4.1143 5.1408 47 1 -3.0992 -4.8058 7.2545 48 1 -1.7241 -5.6362 9.1212 49 1 1.7565 -5.1442 6.9147 50 1 1.6335 -3.8901 2.5387 51 1 3.1564 -2.9749 2.4122 52 1 0.4413 -2.1659 1.2728 53 1 1.8753 -2.6709 0.3461 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101530484.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:38 Heat of formation + Delta-G solvation = -18.121019 kcal Electronic energy + Delta-G solvation = -30638.061717 eV Core-core repulsion = 26701.573724 eV Total energy + Delta-G solvation = -3936.487993 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.64232 -40.89339 -39.80893 -37.42633 -35.55169 -34.63301 -33.34827 -32.84798 -32.12116 -31.75802 -28.95527 -28.18901 -27.73109 -26.20461 -24.54877 -24.49479 -23.62919 -23.31769 -21.92532 -20.27947 -19.81014 -19.04032 -18.09851 -18.00814 -17.42809 -16.96511 -16.70777 -16.30902 -16.06443 -15.82335 -15.59994 -15.27919 -15.12938 -15.07682 -14.68053 -14.58167 -14.36341 -14.25033 -14.00136 -13.98609 -13.89643 -13.44483 -13.22924 -13.17214 -13.03565 -12.89889 -12.75676 -12.66101 -12.43993 -12.26996 -12.10968 -11.94834 -11.82985 -11.71997 -11.27955 -11.17969 -10.95784 -10.93766 -10.84224 -10.63488 -10.40760 -9.88633 -9.60468 -9.22113 -8.01180 -5.31895 0.16019 0.36675 1.35395 1.38178 1.45477 1.63144 2.05166 2.48034 2.88652 3.30585 3.50047 3.58819 3.62879 3.74336 3.79167 3.88257 3.92077 3.99786 4.08384 4.11640 4.17348 4.23779 4.30327 4.37759 4.42457 4.47822 4.51051 4.55882 4.65147 4.75377 4.83230 4.83585 4.88682 4.89928 4.94783 4.96535 5.00569 5.05860 5.12499 5.18124 5.19158 5.21735 5.25261 5.31055 5.36217 5.41900 5.52092 5.65024 5.69468 5.79330 5.79487 6.23861 6.44118 7.03464 7.11417 7.18438 7.90402 8.07781 9.20641 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.021946 B = 0.002033 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.548122 B =13772.476241 C =14058.103441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.060 4.060 3 C -0.140 4.140 4 C 0.162 3.838 5 N -0.756 5.756 6 C -0.225 4.225 7 H 0.058 0.942 8 C -0.066 4.066 9 N -0.984 5.984 10 Si 0.947 3.053 11 H -0.280 1.280 12 H -0.297 1.297 13 H -0.254 1.254 14 C -0.064 4.064 15 C -0.122 4.122 16 C 0.112 3.888 17 N -0.606 5.606 18 C 0.515 3.485 19 O -0.586 6.586 20 C -0.093 4.093 21 C -0.123 4.123 22 C -0.075 4.075 23 C -0.172 4.172 24 C 0.079 3.921 25 N -0.516 5.516 26 C 0.093 3.907 27 C 0.107 3.893 28 C -0.136 4.136 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.019 0.981 36 H 0.031 0.969 37 H 0.365 0.635 38 H 0.256 0.744 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.129 0.871 45 H 0.133 0.867 46 H 0.148 0.852 47 H 0.160 0.840 48 H 0.175 0.825 49 H 0.161 0.839 50 H 0.110 0.890 51 H 0.085 0.915 52 H 0.068 0.932 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.017 -7.961 27.531 28.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.060 4.060 3 C -0.197 4.197 4 C 0.037 3.963 5 N -0.402 5.402 6 C -0.357 4.357 7 H 0.076 0.924 8 C -0.257 4.257 9 N -0.636 5.636 10 Si 0.775 3.225 11 H -0.206 1.206 12 H -0.224 1.224 13 H -0.178 1.178 14 C -0.083 4.083 15 C -0.160 4.160 16 C -0.010 4.010 17 N -0.339 5.339 18 C 0.304 3.696 19 O -0.466 6.466 20 C -0.133 4.133 21 C -0.126 4.126 22 C -0.101 4.101 23 C -0.191 4.191 24 C -0.077 4.077 25 N -0.225 5.225 26 C -0.064 4.064 27 C -0.015 4.015 28 C -0.174 4.174 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.037 0.963 36 H 0.049 0.951 37 H 0.199 0.801 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.147 0.853 45 H 0.151 0.849 46 H 0.166 0.834 47 H 0.178 0.822 48 H 0.192 0.808 49 H 0.179 0.821 50 H 0.129 0.871 51 H 0.104 0.896 52 H 0.087 0.913 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.567 -8.079 28.626 29.957 hybrid contribution -0.986 1.400 -1.531 2.297 sum -4.553 -6.679 27.095 28.275 Atomic orbital electron populations 1.21894 0.94797 1.01940 1.00838 1.20661 0.95690 0.95618 0.94039 1.21882 1.01128 0.95487 1.01239 1.20931 0.95918 0.94745 0.84747 1.42814 1.61899 1.33567 1.01897 1.19063 1.24297 1.08468 0.83829 0.92402 1.25444 1.02907 1.02575 0.94796 1.69874 1.52110 1.43956 0.97626 0.85521 0.79158 0.80331 0.77463 1.20612 1.22351 1.17829 1.21004 1.00430 0.94521 0.92316 1.21992 1.01078 0.99904 0.93015 1.21576 1.00311 0.80480 0.98637 1.48295 1.56642 1.11033 1.17927 1.20951 0.76585 0.90180 0.81850 1.90705 1.55799 1.66770 1.33330 1.20711 1.03768 0.91941 0.96893 1.20514 0.94867 1.00189 0.96980 1.21811 0.94240 0.95249 0.98838 1.22442 1.02870 0.99918 0.93906 1.23201 0.89212 0.95531 0.99754 1.67661 1.12300 1.16573 1.25955 1.22856 1.00852 0.94574 0.88094 1.22045 1.01562 0.95601 0.82280 1.22101 1.01572 0.95463 0.98227 0.91293 0.95009 0.92203 0.92521 0.94822 0.90680 0.96251 0.95073 0.80116 0.93504 0.90365 0.91874 0.89698 0.90445 0.90911 0.85259 0.84890 0.83443 0.82229 0.80809 0.82149 0.87142 0.89645 0.91324 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 7.60 71.98 0.55 -2.95 16 2 C -0.06 -1.50 0.33 -52.18 -0.02 -1.51 16 3 C -0.14 -3.54 7.95 71.98 0.57 -2.97 16 4 C 0.16 5.60 4.80 86.38 0.41 6.01 16 5 N -0.76 -33.95 4.81 -343.45 -1.65 -35.60 16 6 C -0.23 -12.62 10.47 84.04 0.88 -11.74 16 7 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 8 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 9 N -0.98 -62.81 13.97 21.65 0.30 -62.50 16 10 Si 0.95 45.34 27.73 68.60 1.90 47.24 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 12 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 13 H -0.25 -10.97 6.52 99.48 0.65 -10.32 16 14 C -0.06 -1.15 1.51 -10.77 -0.02 -1.17 16 15 C -0.12 -1.99 4.65 30.67 0.14 -1.85 16 16 C 0.11 1.86 6.42 86.36 0.55 2.42 16 17 N -0.61 -9.25 2.98 -818.19 -2.44 -11.69 16 18 C 0.51 9.36 7.70 87.66 0.67 10.03 16 19 O -0.59 -16.10 15.45 -3.04 -0.05 -16.15 16 20 C -0.09 -1.03 4.21 29.10 0.12 -0.91 16 21 C -0.12 -1.97 4.39 -19.78 -0.09 -2.06 16 22 C -0.08 -1.13 9.86 22.47 0.22 -0.91 16 23 C -0.17 -2.38 10.11 22.36 0.23 -2.15 16 24 C 0.08 1.30 11.18 84.69 0.95 2.25 16 25 N -0.52 -10.86 10.36 -195.85 -2.03 -12.89 16 26 C 0.09 1.72 10.86 84.67 0.92 2.64 16 27 C 0.11 1.15 6.35 86.31 0.55 1.70 16 28 C -0.14 -2.11 4.65 30.67 0.14 -1.97 16 29 H 0.07 1.46 6.46 -2.38 -0.02 1.45 16 30 H 0.03 0.97 6.86 -2.39 -0.02 0.95 16 31 H 0.06 1.46 6.46 -2.39 -0.02 1.45 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.03 1.01 6.86 -2.39 -0.02 0.99 16 34 H 0.07 1.51 6.40 -2.39 -0.02 1.49 16 35 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.03 1.07 6.40 -2.39 -0.02 1.06 16 37 H 0.36 15.90 3.22 -92.71 -0.30 15.60 16 38 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 40 H 0.06 1.14 6.51 -2.39 -0.02 1.13 16 41 H 0.08 1.30 6.36 -2.39 -0.02 1.28 16 42 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.07 1.49 7.00 -2.39 -0.02 1.47 16 44 H 0.13 0.85 7.65 -2.39 -0.02 0.83 16 45 H 0.13 0.76 7.91 -2.39 -0.02 0.74 16 46 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 47 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 48 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 49 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 50 H 0.11 0.64 5.97 -2.39 -0.01 0.62 16 51 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 52 H 0.07 1.14 6.51 -2.39 -0.02 1.12 16 53 H 0.08 1.40 6.36 -2.39 -0.02 1.39 16 Total: -1.00 -78.13 400.82 3.85 -74.28 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.55 Total: 25.85 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 7.26 Total: -8.53 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -5.82 Total: -122.68 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.05 Total: -16.15 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.90 Total: 47.24 kcal Total: -78.13 3.85 -74.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101530484.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.158 kcal (2) G-P(sol) polarization free energy of solvation -78.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds