Wall clock time and date at job start Wed Apr 1 2020 03:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47021 * 2 1 4 4 C 1.52995 * 109.47301 * 120.00396 * 2 1 3 5 5 N 1.46503 * 109.47057 * 299.99830 * 4 2 1 6 6 C 1.36941 * 119.99664 * 180.02562 * 5 4 2 7 7 H 1.07990 * 120.00145 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99375 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00577 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99891 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47187 * 60.00136 * 10 8 6 12 12 H 1.48507 * 109.47504 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47428 * 300.00428 * 10 8 6 14 14 C 1.53008 * 109.47163 * 240.00312 * 2 1 3 15 15 C 1.53036 * 109.45975 * 180.02562 * 14 2 1 16 16 C 1.53200 * 109.31282 * 178.60311 * 15 14 2 17 17 N 1.46919 * 108.76442 * 54.65266 * 16 15 14 18 18 C 1.34782 * 120.63020 * 126.36611 * 17 16 15 19 19 O 1.21773 * 119.99774 * 354.74617 * 18 17 16 20 20 C 1.41518 * 119.99959 * 174.74717 * 18 17 16 21 21 C 1.35614 * 119.99574 * 184.97445 * 20 18 17 22 22 C 1.41681 * 119.99890 * 180.02562 * 21 20 18 23 23 C 1.38275 * 126.26024 * 180.02562 * 22 21 20 24 24 C 1.39789 * 107.07767 * 179.97438 * 23 22 21 25 25 C 1.35502 * 107.91151 * 359.97438 * 24 23 22 26 26 N 1.35763 * 108.90651 * 359.75668 * 25 24 23 27 27 H 0.96993 * 125.68571 * 180.27929 * 26 25 24 28 28 C 1.46933 * 118.74089 * 306.38753 * 17 16 15 29 29 C 1.53041 * 109.45814 * 59.96912 * 14 2 1 30 30 H 1.09000 * 109.47079 * 299.99630 * 1 2 3 31 31 H 1.08999 * 109.47453 * 59.99880 * 1 2 3 32 32 H 1.09002 * 109.47247 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46842 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47360 * 299.99880 * 3 2 1 35 35 H 1.09000 * 109.46892 * 60.00255 * 3 2 1 36 36 H 1.09008 * 109.47504 * 179.97438 * 4 2 1 37 37 H 1.08998 * 109.47542 * 60.00083 * 4 2 1 38 38 H 0.96996 * 119.99932 * 359.97438 * 5 4 2 39 39 H 0.96994 * 120.00502 * 179.97438 * 9 8 6 40 40 H 1.08996 * 109.45530 * 300.00024 * 14 2 1 41 41 H 1.08998 * 109.49764 * 298.56346 * 15 14 2 42 42 H 1.08998 * 109.50025 * 58.66347 * 15 14 2 43 43 H 1.09002 * 109.59363 * 294.87185 * 16 15 14 44 44 H 1.09000 * 109.70312 * 174.50616 * 16 15 14 45 45 H 1.08001 * 119.99874 * 4.98013 * 20 18 17 46 46 H 1.08001 * 120.00223 * 359.97438 * 21 20 18 47 47 H 1.08003 * 126.46299 * 0.02562 * 23 22 21 48 48 H 1.08001 * 126.04642 * 180.02562 * 24 23 22 49 49 H 1.07998 * 125.54913 * 180.02562 * 25 24 23 50 50 H 1.08998 * 109.58718 * 293.81914 * 28 17 16 51 51 H 1.09002 * 109.70108 * 173.46333 * 28 17 16 52 52 H 1.08996 * 109.49842 * 301.34201 * 29 14 2 53 53 H 1.09002 * 109.49435 * 61.43594 * 29 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.5517 -0.0307 2.4454 6 6 1.8830 -0.4984 3.6891 7 1 2.5039 -1.3764 3.7881 8 6 1.4199 0.1556 4.8225 9 7 0.6619 1.2249 4.7018 10 14 1.8712 -0.4826 6.5190 11 1 3.3479 -0.4702 6.6759 12 1 1.2556 0.3858 7.5546 13 1 1.3685 -1.8711 6.6755 14 6 2.0400 -0.7212 -1.2493 15 6 3.5703 -0.7216 -1.2487 16 6 4.0773 -1.4747 -2.4828 17 7 3.4747 -0.8768 -3.6819 18 6 4.2483 -0.4572 -4.7028 19 8 5.4612 -0.4833 -4.5982 20 6 3.6509 0.0138 -5.8961 21 6 4.4265 0.3407 -6.9594 22 6 3.8285 0.8127 -8.1540 23 6 4.4913 1.1806 -9.3104 24 6 3.5187 1.5806 -10.2314 25 6 2.3067 1.4537 -9.6391 26 7 2.4805 0.9823 -8.3779 27 1 1.7733 0.7980 -7.7402 28 6 2.0128 -0.7445 -3.7470 29 6 1.5291 0.0001 -2.4987 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.1301 -0.7217 1.2489 37 1 1.6767 -1.7490 1.2491 38 1 0.9943 0.7581 2.3564 39 1 0.3380 1.6817 5.4938 40 1 1.6765 -1.7488 -1.2491 41 1 3.9344 0.3054 -1.2741 42 1 3.9337 -1.2147 -0.3472 43 1 3.7903 -2.5240 -2.4141 44 1 5.1629 -1.3958 -2.5412 45 1 2.5773 0.1129 -5.9599 46 1 5.5001 0.2421 -6.8954 47 1 5.5590 1.1617 -9.4719 48 1 3.7011 1.9284 -11.2375 49 1 1.3565 1.6853 -10.0974 50 1 1.5575 -1.7343 -3.7815 51 1 1.7340 -0.1828 -4.6385 52 1 0.4394 0.0207 -2.4868 53 1 1.9126 1.0203 -2.5121 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101533512.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:43 Heat of formation + Delta-G solvation = 13.124401 kcal Electronic energy + Delta-G solvation = -30205.159805 eV Core-core repulsion = 26270.026715 eV Total energy + Delta-G solvation = -3935.133090 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.05477 -41.43656 -39.96687 -37.40756 -35.49699 -34.93911 -33.05941 -32.39817 -31.98976 -31.33093 -29.44169 -28.16301 -27.51706 -26.54867 -24.80975 -24.64615 -23.34067 -22.13681 -21.38992 -21.12075 -19.85683 -19.41927 -19.10102 -18.69658 -17.67003 -16.93883 -16.67166 -16.37599 -15.99258 -15.47962 -15.28952 -15.26844 -15.24542 -15.09004 -14.80987 -14.61204 -14.56966 -14.32067 -14.13856 -13.93212 -13.35666 -13.22914 -13.16677 -13.08213 -13.04903 -12.92359 -12.75049 -12.71612 -12.62192 -12.22898 -12.15201 -11.98741 -11.89842 -11.73554 -11.30814 -11.25048 -11.09109 -11.02262 -10.88523 -10.71616 -9.88966 -9.62292 -8.93880 -8.59338 -7.93966 -5.20722 -0.32950 1.45625 1.48444 1.54521 1.56860 2.03523 2.12159 2.35766 2.55038 2.56398 3.39029 3.63921 3.69661 3.75107 3.87827 3.93678 4.14383 4.17463 4.28805 4.30457 4.34159 4.38733 4.39150 4.43225 4.45195 4.53482 4.56120 4.63010 4.80355 4.85039 4.87681 4.92505 4.94871 4.98378 5.01561 5.02899 5.07316 5.16306 5.19372 5.23367 5.26149 5.31806 5.37629 5.37827 5.44734 5.49334 5.62345 5.67621 5.68957 5.94684 6.07111 6.29169 6.48275 6.65137 7.20652 7.35623 8.15132 8.38286 9.29436 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.026311 B = 0.001825 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.951306 B =15335.048855 C =15867.866980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.055 4.055 3 C -0.132 4.132 4 C 0.159 3.841 5 N -0.739 5.739 6 C -0.244 4.244 7 H 0.071 0.929 8 C -0.075 4.075 9 N -0.969 5.969 10 Si 0.971 3.029 11 H -0.281 1.281 12 H -0.295 1.295 13 H -0.278 1.278 14 C -0.062 4.062 15 C -0.127 4.127 16 C 0.116 3.884 17 N -0.606 5.606 18 C 0.546 3.454 19 O -0.604 6.604 20 C -0.262 4.262 21 C 0.040 3.960 22 C -0.023 4.023 23 C -0.153 4.153 24 C -0.230 4.230 25 C 0.033 3.967 26 N -0.537 5.537 27 H 0.428 0.572 28 C 0.106 3.894 29 C -0.129 4.129 30 H 0.029 0.971 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.029 0.971 36 H 0.015 0.985 37 H 0.014 0.986 38 H 0.376 0.624 39 H 0.250 0.750 40 H 0.079 0.921 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.149 0.851 46 H 0.134 0.866 47 H 0.148 0.852 48 H 0.155 0.845 49 H 0.204 0.796 50 H 0.086 0.914 51 H 0.108 0.892 52 H 0.099 0.901 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.778 -1.804 -33.266 33.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.055 4.055 3 C -0.189 4.189 4 C 0.032 3.968 5 N -0.383 5.383 6 C -0.376 4.376 7 H 0.089 0.911 8 C -0.268 4.268 9 N -0.620 5.620 10 Si 0.800 3.200 11 H -0.207 1.207 12 H -0.221 1.221 13 H -0.204 1.204 14 C -0.081 4.081 15 C -0.165 4.165 16 C -0.007 4.007 17 N -0.338 5.338 18 C 0.341 3.659 19 O -0.489 6.489 20 C -0.283 4.283 21 C 0.019 3.981 22 C -0.133 4.133 23 C -0.178 4.178 24 C -0.254 4.254 25 C -0.104 4.104 26 N -0.133 5.133 27 H 0.268 0.732 28 C -0.015 4.015 29 C -0.166 4.166 30 H 0.048 0.952 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.033 0.967 37 H 0.032 0.968 38 H 0.210 0.790 39 H 0.059 0.941 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.167 0.833 46 H 0.152 0.848 47 H 0.166 0.834 48 H 0.172 0.828 49 H 0.221 0.779 50 H 0.105 0.895 51 H 0.126 0.874 52 H 0.117 0.883 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.220 -1.996 -32.936 32.997 hybrid contribution 0.026 0.049 1.995 1.995 sum -0.194 -1.947 -30.942 31.004 Atomic orbital electron populations 1.21791 0.94114 1.01638 1.01310 1.20590 0.95940 0.95187 0.93784 1.21820 1.00232 0.95930 1.00899 1.20920 0.95641 0.94114 0.86107 1.42610 1.61230 1.33390 1.01064 1.19602 1.24572 1.08255 0.85219 0.91119 1.25506 1.01279 0.98601 1.01367 1.69799 1.40923 1.22355 1.28887 0.85250 0.77613 0.77352 0.79776 1.20712 1.22075 1.20434 1.21011 0.94051 0.99729 0.93353 1.22003 0.96513 1.00666 0.97359 1.21522 0.98570 0.96973 0.83640 1.48112 1.08169 1.60393 1.17102 1.17419 0.86250 0.77352 0.84850 1.90792 1.16057 1.58636 1.83436 1.21806 1.01427 1.11182 0.93874 1.20814 1.00214 0.87786 0.89298 1.18199 0.84072 1.14168 0.96811 1.21874 1.00287 1.02932 0.92728 1.21233 0.92254 1.10247 1.01633 1.22717 1.01337 1.01659 0.84655 1.42234 1.06822 1.50204 1.14010 0.73168 1.22057 0.77778 1.02207 0.99502 1.22083 1.02316 0.99354 0.92886 0.95188 0.90203 0.92736 0.93695 0.90930 0.95139 0.96688 0.96821 0.79018 0.94095 0.90246 0.92639 0.91273 0.90201 0.91137 0.83331 0.84835 0.83439 0.82762 0.77897 0.89542 0.87355 0.88260 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 7.95 71.98 0.57 -3.23 16 2 C -0.05 -1.64 0.33 -52.18 -0.02 -1.65 16 3 C -0.13 -4.16 7.60 71.98 0.55 -3.62 16 4 C 0.16 6.34 4.80 86.38 0.41 6.76 16 5 N -0.74 -37.89 5.01 -343.45 -1.72 -39.61 16 6 C -0.24 -13.94 9.99 84.03 0.84 -13.10 16 7 H 0.07 3.90 7.83 -2.92 -0.02 3.88 16 8 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 9 N -0.97 -59.94 13.06 21.65 0.28 -59.66 16 10 Si 0.97 47.01 29.55 68.60 2.03 49.04 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 12 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 13 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 14 C -0.06 -1.40 1.51 -10.77 -0.02 -1.41 16 15 C -0.13 -3.16 4.65 30.67 0.14 -3.02 16 16 C 0.12 2.66 6.44 86.37 0.56 3.22 16 17 N -0.61 -12.43 2.97 -829.57 -2.47 -14.89 16 18 C 0.55 13.18 7.45 85.05 0.63 13.81 16 19 O -0.60 -19.88 15.53 -4.58 -0.07 -19.95 16 20 C -0.26 -4.35 8.78 22.47 0.20 -4.15 16 21 C 0.04 0.68 9.40 22.51 0.21 0.89 16 22 C -0.02 -0.32 6.74 39.08 0.26 -0.06 16 23 C -0.15 -2.12 10.86 22.65 0.25 -1.88 16 24 C -0.23 -2.42 10.81 22.01 0.24 -2.18 16 25 C 0.03 0.23 11.90 83.45 0.99 1.22 16 26 N -0.54 -4.55 5.94 -187.33 -1.11 -5.66 16 27 H 0.43 1.34 7.87 -92.71 -0.73 0.61 16 28 C 0.11 1.38 6.30 86.36 0.54 1.92 16 29 C -0.13 -2.07 4.65 30.67 0.14 -1.93 16 30 H 0.03 1.08 6.86 -2.39 -0.02 1.07 16 31 H 0.08 1.74 6.40 -2.39 -0.02 1.73 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.04 1.46 6.46 -2.38 -0.02 1.45 16 34 H 0.07 1.86 6.46 -2.39 -0.02 1.84 16 35 H 0.03 1.16 6.86 -2.39 -0.02 1.15 16 36 H 0.02 0.63 6.40 -2.38 -0.02 0.61 16 37 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.38 20.37 5.36 -92.71 -0.50 19.87 16 39 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 40 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.05 1.54 6.51 -2.39 -0.02 1.53 16 42 H 0.07 1.89 6.36 -2.39 -0.02 1.88 16 43 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.07 1.93 6.99 -2.39 -0.02 1.91 16 45 H 0.15 1.37 4.66 -2.91 -0.01 1.35 16 46 H 0.13 2.63 7.47 -2.91 -0.02 2.61 16 47 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 48 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 49 H 0.20 -0.10 8.06 -2.91 -0.02 -0.12 16 50 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.11 0.82 5.37 -2.39 -0.01 0.80 16 52 H 0.10 1.27 6.36 -2.39 -0.02 1.25 16 53 H 0.06 1.17 6.51 -2.39 -0.02 1.15 16 Total: -1.00 -77.24 402.95 3.63 -73.61 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: -0.29 Total: 29.48 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: 6.97 Total: -12.35 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -5.01 Total: -119.83 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.07 Total: -19.95 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -77.24 3.63 -73.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101533512.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.732 kcal (2) G-P(sol) polarization free energy of solvation -77.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds