Wall clock time and date at job start Wed Apr 1 2020 03:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52998 * 109.46764 * 174.74503 * 3 2 1 5 5 H 1.09008 * 109.47166 * 305.68242 * 4 3 2 6 6 C 1.50701 * 109.47316 * 65.68099 * 4 3 2 7 7 O 1.21282 * 119.99401 * 31.32722 * 6 4 3 8 8 N 1.34773 * 119.99970 * 211.32074 * 6 4 3 9 9 C 1.46503 * 119.99769 * 175.16368 * 8 6 4 10 10 C 1.52995 * 109.47323 * 180.02562 * 9 8 6 11 11 H 1.09007 * 110.64402 * 51.85777 * 10 9 8 12 12 C 1.54327 * 110.72239 * 288.52664 * 10 9 8 13 13 N 1.47291 * 107.30567 * 219.45309 * 12 10 9 14 14 C 1.36940 * 125.79205 * 178.92271 * 13 12 10 15 15 H 1.07999 * 120.00156 * 0.02845 * 14 13 12 16 16 C 1.38812 * 119.99907 * 180.02562 * 14 13 12 17 17 N 1.31614 * 119.99863 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99828 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47238 * 59.99593 * 18 16 14 20 20 H 1.48492 * 109.47071 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46641 * 299.99636 * 18 16 14 22 22 C 1.47420 * 108.55817 * 358.92313 * 13 12 10 23 23 C 1.54900 * 104.93057 * 24.15641 * 22 13 12 24 24 H 1.08999 * 111.00700 * 81.00845 * 23 22 13 25 25 C 1.53009 * 111.00569 * 204.86323 * 23 22 13 26 26 C 1.50699 * 109.46980 * 185.68423 * 4 3 2 27 27 C 1.38230 * 119.61767 * 274.99688 * 26 4 3 28 28 C 1.38623 * 119.16175 * 179.97438 * 27 26 4 29 29 C 1.38677 * 118.42353 * 0.02562 * 28 27 26 30 30 C 1.38180 * 119.16021 * 0.02562 * 29 28 27 31 31 N 1.31856 * 119.62007 * 94.72935 * 26 4 3 32 32 H 1.08997 * 109.46850 * 59.99794 * 1 2 3 33 33 H 1.08998 * 109.47076 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.46830 * 299.99749 * 1 2 3 35 35 H 1.08997 * 109.46830 * 240.00251 * 2 1 3 36 36 H 1.08997 * 109.46850 * 120.00206 * 2 1 3 37 37 H 1.09004 * 109.46984 * 54.74650 * 3 2 1 38 38 H 1.08999 * 109.47556 * 294.74358 * 3 2 1 39 39 H 0.96999 * 120.00648 * 355.16537 * 8 6 4 40 40 H 1.09007 * 109.47137 * 60.00225 * 9 8 6 41 41 H 1.09001 * 109.47573 * 300.00491 * 9 8 6 42 42 H 1.09005 * 109.87975 * 338.85782 * 12 10 9 43 43 H 1.09002 * 109.88483 * 100.01984 * 12 10 9 44 44 H 0.97003 * 119.99466 * 180.02562 * 17 16 14 45 45 H 1.09007 * 110.36425 * 265.26316 * 22 13 12 46 46 H 1.08995 * 110.36764 * 143.05319 * 22 13 12 47 47 H 1.09000 * 109.47263 * 58.54455 * 25 23 22 48 48 H 1.09002 * 109.46688 * 178.54515 * 25 23 22 49 49 H 1.09001 * 109.46620 * 298.54805 * 25 23 22 50 50 H 1.07997 * 120.41982 * 359.96128 * 27 26 4 51 51 H 1.08003 * 120.79167 * 179.97438 * 28 27 26 52 52 H 1.07998 * 120.42498 * 179.97438 * 29 28 27 53 53 H 1.07998 * 119.62021 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5643 1.4445 0.1321 5 1 3.8534 0.8713 1.0131 6 6 4.1758 0.8208 -1.0959 7 8 3.6225 0.9279 -2.1699 8 7 5.3375 0.1442 -1.0007 9 6 5.8779 -0.5516 -2.1713 10 6 7.1942 -1.2350 -1.7957 11 1 7.0671 -1.8508 -0.9053 12 6 8.3115 -0.1910 -1.5870 13 7 9.5464 -0.7498 -2.1633 14 6 10.7653 -0.1268 -2.2024 15 1 10.8794 0.8629 -1.7855 16 6 11.8540 -0.7674 -2.7778 17 7 11.7150 -1.9737 -3.2853 18 14 13.5168 0.0822 -2.8305 19 1 13.9653 0.3787 -1.4463 20 1 14.5058 -0.8060 -3.4923 21 1 13.4009 1.3498 -3.5955 22 6 9.2512 -2.0939 -2.6919 23 6 7.7290 -2.0845 -2.9788 24 1 7.5142 -1.6038 -3.9332 25 6 7.1547 -3.5021 -2.9397 26 6 4.0545 2.8626 0.2725 27 6 4.2811 3.6223 -0.8599 28 6 4.7314 4.9259 -0.7198 29 6 4.9385 5.4188 0.5598 30 6 4.6912 4.5998 1.6449 31 7 4.2571 3.3662 1.4741 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5139 0.8900 37 1 1.6019 1.9828 0.8392 38 1 1.7556 1.9285 -0.9333 39 1 5.8158 0.1178 -0.1573 40 1 6.0567 0.1674 -2.9709 41 1 5.1633 -1.3016 -2.5102 42 1 8.0517 0.7368 -2.0969 43 1 8.4507 -0.0048 -0.5221 44 1 12.4759 -2.4215 -3.6871 45 1 9.4926 -2.8549 -1.9497 46 1 9.8094 -2.2711 -3.6112 47 1 7.3445 -3.9442 -1.9616 48 1 6.0801 -3.4638 -3.1188 49 1 7.6303 -4.1081 -3.7108 50 1 4.1098 3.2055 -1.8413 51 1 4.9175 5.5427 -1.5866 52 1 5.2892 6.4296 0.7064 53 1 4.8496 4.9762 2.6448 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102282358.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:54 Heat of formation + Delta-G solvation = -18.213124 kcal Electronic energy + Delta-G solvation = -30733.098307 eV Core-core repulsion = 26796.606319 eV Total energy + Delta-G solvation = -3936.491987 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.80763 -40.53595 -39.58232 -36.62907 -35.96505 -34.69507 -33.65401 -33.23313 -32.56199 -30.95400 -29.96106 -27.89613 -26.83613 -25.79656 -24.63425 -24.46301 -23.23676 -22.43466 -21.56062 -21.40365 -20.52981 -18.93096 -18.45289 -17.88504 -17.35716 -17.06818 -16.77237 -16.39623 -16.25991 -15.83669 -15.74996 -15.49285 -15.26883 -14.81783 -14.56909 -14.50839 -14.34913 -14.09728 -13.99477 -13.88197 -13.53808 -13.41224 -13.28381 -13.00657 -12.83232 -12.78329 -12.67774 -12.57158 -12.47677 -12.21361 -12.01140 -11.87209 -11.83983 -11.62461 -11.55685 -11.42481 -11.27079 -10.87058 -10.82876 -10.74064 -10.46823 -10.11593 -9.94208 -8.89584 -7.78258 -5.22890 0.07918 0.29189 1.44466 1.47542 1.50657 1.54054 2.10176 2.47861 2.76579 3.23584 3.30324 3.53004 3.63062 3.77286 3.83860 3.87772 3.90749 3.95786 4.00710 4.08762 4.15764 4.22660 4.23915 4.37632 4.43219 4.48990 4.59004 4.62203 4.69004 4.74228 4.76215 4.80445 4.83554 4.85251 4.93059 4.95615 5.00969 5.09195 5.14988 5.15984 5.23116 5.25217 5.34373 5.35675 5.38204 5.40747 5.45173 5.48974 5.72018 5.72386 5.83548 6.30832 6.47790 6.94731 7.10051 7.15792 7.77271 8.41500 9.22867 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.002863 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.309565 B = 9778.807809 C =11924.573977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.089 4.089 4 C -0.051 4.051 5 H 0.121 0.879 6 C 0.526 3.474 7 O -0.565 6.565 8 N -0.716 5.716 9 C 0.146 3.854 10 C -0.089 4.089 11 H 0.096 0.904 12 C 0.139 3.861 13 N -0.629 5.629 14 C -0.241 4.241 15 H 0.077 0.923 16 C -0.066 4.066 17 N -0.947 5.947 18 Si 0.979 3.021 19 H -0.278 1.278 20 H -0.292 1.292 21 H -0.278 1.278 22 C 0.162 3.838 23 C -0.100 4.100 24 H 0.065 0.935 25 C -0.127 4.127 26 C 0.125 3.875 27 C -0.182 4.182 28 C -0.079 4.079 29 C -0.168 4.168 30 C 0.092 3.908 31 N -0.494 5.494 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.410 0.590 40 H 0.051 0.949 41 H 0.080 0.920 42 H 0.017 0.983 43 H 0.023 0.977 44 H 0.247 0.753 45 H -0.010 1.010 46 H 0.069 0.931 47 H 0.056 0.944 48 H 0.074 0.926 49 H 0.053 0.947 50 H 0.124 0.876 51 H 0.153 0.847 52 H 0.167 0.833 53 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.093 8.724 9.607 24.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.127 4.127 4 C -0.073 4.073 5 H 0.139 0.861 6 C 0.312 3.688 7 O -0.444 6.444 8 N -0.367 5.367 9 C 0.022 3.978 10 C -0.108 4.108 11 H 0.114 0.886 12 C 0.014 3.986 13 N -0.354 5.354 14 C -0.370 4.370 15 H 0.094 0.906 16 C -0.258 4.258 17 N -0.596 5.596 18 Si 0.807 3.193 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.204 1.204 22 C 0.037 3.963 23 C -0.120 4.120 24 H 0.084 0.916 25 C -0.184 4.184 26 C -0.013 4.013 27 C -0.202 4.202 28 C -0.105 4.105 29 C -0.188 4.188 30 C -0.065 4.065 31 N -0.204 5.204 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.246 0.754 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.035 0.965 43 H 0.041 0.959 44 H 0.057 0.943 45 H 0.008 0.992 46 H 0.087 0.913 47 H 0.075 0.925 48 H 0.093 0.907 49 H 0.072 0.928 50 H 0.142 0.858 51 H 0.170 0.830 52 H 0.184 0.816 53 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -21.435 8.232 9.506 24.851 hybrid contribution 1.823 0.839 -0.719 2.131 sum -19.612 9.071 8.787 23.326 Atomic orbital electron populations 1.21718 0.94581 1.02202 1.01991 1.21541 0.97119 0.95494 1.01984 1.21419 0.89996 0.98529 1.02747 1.20248 0.97878 0.91863 0.97284 0.86086 1.20553 0.80371 0.77557 0.90278 1.90676 1.62797 1.60629 1.30342 1.46066 1.23258 1.52543 1.14856 1.21206 0.93645 0.95362 0.87615 1.22338 0.92400 0.96410 0.99661 0.88627 1.21524 0.86351 0.95094 0.95636 1.44858 1.05652 1.16272 1.68661 1.19380 0.86311 0.99236 1.32121 0.90552 1.25618 1.01584 0.97483 1.01145 1.70048 1.29949 1.14360 1.45290 0.85147 0.79067 0.77323 0.77775 1.20395 1.21772 1.20432 1.21756 0.91640 0.84861 0.98020 1.22433 0.95797 0.96728 0.97046 0.91621 1.21601 1.00851 0.94030 1.01950 1.20608 0.96453 0.95230 0.88968 1.22169 1.01664 0.96326 1.00083 1.21940 0.94460 0.94712 0.99373 1.22534 1.00649 1.02883 0.92712 1.23315 0.93559 0.88552 1.01054 1.67431 1.12733 1.15310 1.24899 0.93201 0.91989 0.91788 0.93290 0.90770 0.90045 0.92009 0.75424 0.93109 0.90206 0.96527 0.95887 0.94292 0.99192 0.91332 0.92536 0.90723 0.92816 0.85785 0.82965 0.81552 0.79710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 71.99 0.71 -1.46 16 2 C -0.12 -2.16 5.66 30.60 0.17 -1.99 16 3 C -0.09 -1.70 4.40 30.59 0.13 -1.57 16 4 C -0.05 -1.06 2.50 -12.29 -0.03 -1.09 16 5 H 0.12 2.18 8.14 -2.38 -0.02 2.16 16 6 C 0.53 13.38 5.06 87.66 0.44 13.82 16 7 O -0.57 -17.79 14.73 -3.04 -0.04 -17.84 16 8 N -0.72 -17.50 5.47 -463.06 -2.53 -20.03 16 9 C 0.15 4.05 5.02 86.38 0.43 4.48 16 10 C -0.09 -2.83 2.43 -9.61 -0.02 -2.85 16 11 H 0.10 2.74 8.01 -2.38 -0.02 2.72 16 12 C 0.14 5.67 6.77 86.68 0.59 6.26 16 13 N -0.63 -32.69 3.40 -691.31 -2.35 -35.04 16 14 C -0.24 -13.76 10.28 84.03 0.86 -12.89 16 15 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 16 C -0.07 -3.76 5.49 84.86 0.47 -3.30 16 17 N -0.95 -56.74 10.09 21.65 0.22 -56.52 16 18 Si 0.98 46.01 29.55 68.60 2.03 48.03 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 C 0.16 7.95 5.35 86.85 0.46 8.42 16 23 C -0.10 -3.60 3.09 -9.40 -0.03 -3.63 16 24 H 0.07 2.45 8.05 -2.39 -0.02 2.43 16 25 C -0.13 -3.62 9.29 71.99 0.67 -2.95 16 26 C 0.12 2.85 5.78 42.55 0.25 3.09 16 27 C -0.18 -4.27 9.18 22.36 0.21 -4.07 16 28 C -0.08 -1.47 10.18 22.47 0.23 -1.24 16 29 C -0.17 -2.54 10.11 22.36 0.23 -2.32 16 30 C 0.09 1.55 11.18 84.67 0.95 2.49 16 31 N -0.49 -10.71 10.27 -183.88 -1.89 -12.60 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 1.04 7.30 -2.39 -0.02 1.03 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.06 1.39 7.65 -2.39 -0.02 1.37 16 39 H 0.41 8.77 8.47 -92.71 -0.79 7.99 16 40 H 0.05 1.63 7.94 -2.38 -0.02 1.61 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.02 0.70 7.68 -2.38 -0.02 0.68 16 43 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 45 H -0.01 -0.52 8.04 -2.38 -0.02 -0.54 16 46 H 0.07 3.89 5.87 -2.39 -0.01 3.87 16 47 H 0.06 1.57 8.11 -2.39 -0.02 1.55 16 48 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.12 3.29 6.49 -2.91 -0.02 3.27 16 51 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 52 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 53 H 0.19 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -71.52 421.85 2.24 -69.28 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.09 Total: 25.50 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 6.72 Total: -0.79 kcal Atomic # 7 Polarization: -117.64 SS G_CDS: -6.56 Total: -124.20 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.04 Total: -17.84 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -71.52 2.24 -69.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102282358.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.070 kcal (2) G-P(sol) polarization free energy of solvation -71.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds