Wall clock time and date at job start Wed Apr 1 2020 03:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47437 * 2 1 4 4 C 1.53000 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46693 * 304.99512 * 4 3 2 6 6 C 1.50702 * 109.46751 * 185.00516 * 4 3 2 7 7 O 1.21287 * 119.99234 * 239.99676 * 6 4 3 8 8 N 1.34776 * 120.00539 * 59.99669 * 6 4 3 9 9 C 1.46494 * 119.99924 * 179.97438 * 8 6 4 10 10 C 1.53003 * 109.47093 * 180.02562 * 9 8 6 11 11 H 1.08994 * 110.64092 * 51.85750 * 10 9 8 12 12 C 1.54325 * 110.72022 * 288.52410 * 10 9 8 13 13 N 1.47290 * 107.30599 * 219.45263 * 12 10 9 14 14 C 1.36938 * 125.79079 * 178.92205 * 13 12 10 15 15 H 1.07995 * 120.00281 * 0.02562 * 14 13 12 16 16 C 1.38810 * 119.99650 * 180.02562 * 14 13 12 17 17 N 1.31621 * 120.00025 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00113 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47166 * 59.99694 * 18 16 14 20 20 H 1.48493 * 109.47565 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47135 * 300.00010 * 18 16 14 22 22 C 1.47425 * 108.55742 * 358.92448 * 13 12 10 23 23 C 1.54908 * 104.92961 * 24.15407 * 22 13 12 24 24 H 1.09008 * 111.00422 * 81.04917 * 23 22 13 25 25 C 1.52999 * 111.00368 * 204.85960 * 23 22 13 26 26 C 1.50698 * 109.47469 * 65.00094 * 4 3 2 27 27 C 1.38224 * 119.61446 * 84.72686 * 26 4 3 28 28 C 1.38635 * 119.15672 * 179.75391 * 27 26 4 29 29 C 1.38676 * 118.41970 * 0.51320 * 28 27 26 30 30 C 1.38186 * 119.16087 * 359.72942 * 29 28 27 31 31 N 1.31852 * 119.61655 * 265.00247 * 26 4 3 32 32 H 1.08999 * 109.47075 * 59.99431 * 1 2 3 33 33 H 1.08994 * 109.47139 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46791 * 299.99638 * 1 2 3 35 35 H 1.09003 * 109.46791 * 240.00362 * 2 1 3 36 36 H 1.09001 * 109.47582 * 120.00627 * 2 1 3 37 37 H 1.08997 * 109.47073 * 60.00025 * 3 2 1 38 38 H 1.08999 * 109.46765 * 300.00639 * 3 2 1 39 39 H 0.96994 * 119.99369 * 359.97438 * 8 6 4 40 40 H 1.09000 * 109.47310 * 60.00424 * 9 8 6 41 41 H 1.09004 * 109.47167 * 299.99783 * 9 8 6 42 42 H 1.09004 * 109.88239 * 338.86059 * 12 10 9 43 43 H 1.08995 * 109.88239 * 99.86981 * 12 10 9 44 44 H 0.97001 * 119.99611 * 180.02562 * 17 16 14 45 45 H 1.09002 * 110.36696 * 265.26054 * 22 13 12 46 46 H 1.08995 * 110.36608 * 143.04891 * 22 13 12 47 47 H 1.09001 * 109.47276 * 58.55057 * 25 23 22 48 48 H 1.09003 * 109.46690 * 178.54597 * 25 23 22 49 49 H 1.08998 * 109.47248 * 298.54758 * 25 23 22 50 50 H 1.07998 * 120.42416 * 359.97438 * 27 26 4 51 51 H 1.07998 * 120.78920 * 180.26415 * 28 27 26 52 52 H 1.07998 * 120.42083 * 179.75338 * 29 28 27 53 53 H 1.08005 * 119.61394 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8529 0.8410 6 6 4.0725 2.8578 0.1233 7 8 4.7694 3.3323 -0.7485 8 7 3.7473 3.5963 1.2029 9 6 4.2362 4.9720 1.3235 10 6 3.7271 5.5813 2.6314 11 1 3.9573 4.9295 3.4741 12 6 2.2115 5.8604 2.5502 13 7 1.9661 7.1464 3.2250 14 6 0.7507 7.7640 3.3540 15 1 -0.1350 7.3047 2.9406 16 6 0.6571 8.9804 4.0162 17 7 1.7367 9.5403 4.5196 18 14 -1.0008 9.8225 4.1930 19 1 -1.9296 8.9356 4.9388 20 1 -0.8319 11.0976 4.9351 21 1 -1.5594 10.1035 2.8460 22 6 3.2492 7.6589 3.7391 23 6 4.3295 6.9943 2.8498 24 1 4.4369 7.5245 1.9034 25 6 5.6694 6.9119 3.5838 26 6 4.0719 0.8422 -1.2886 27 6 4.1951 1.6391 -2.4112 28 6 4.6626 1.0782 -3.5897 29 6 4.9799 -0.2717 -3.5978 30 6 4.8261 -1.0065 -2.4376 31 7 4.3833 -0.4383 -1.3330 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8901 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8899 37 1 1.6768 1.9563 0.8900 38 1 1.6767 1.9563 -0.8899 39 1 3.1896 3.2168 1.8998 40 1 3.8729 5.5618 0.4819 41 1 5.3262 4.9716 1.3234 42 1 1.9017 5.9245 1.5071 43 1 1.6607 5.0650 3.0521 44 1 1.6712 10.3902 4.9827 45 1 3.3839 7.3680 4.7809 46 1 3.2913 8.7436 3.6405 47 1 5.5450 6.3413 4.5042 48 1 6.4030 6.4180 2.9465 49 1 6.0148 7.9175 3.8236 50 1 3.9339 2.6862 -2.3699 51 1 4.7732 1.6775 -4.4814 52 1 5.3431 -0.7427 -4.4993 53 1 5.0714 -2.0583 -2.4356 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102282359.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:59 Heat of formation + Delta-G solvation = -10.836508 kcal Electronic energy + Delta-G solvation = -30588.366433 eV Core-core repulsion = 26652.194320 eV Total energy + Delta-G solvation = -3936.172113 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.82414 -40.44129 -39.49474 -36.75936 -36.10867 -34.65644 -33.38833 -32.99967 -32.53495 -31.15166 -29.79999 -27.83271 -26.70660 -25.88828 -24.60495 -24.40253 -23.32619 -22.14232 -21.57465 -21.39515 -20.57045 -18.87570 -18.20740 -17.95044 -17.30519 -16.90546 -16.89821 -16.38850 -16.21503 -15.99441 -15.58812 -15.57086 -15.14120 -14.75512 -14.56348 -14.42177 -14.27308 -14.12092 -13.85507 -13.80451 -13.51671 -13.37258 -13.35712 -13.07217 -12.94134 -12.76509 -12.64850 -12.46196 -12.38655 -12.05555 -12.01606 -11.99580 -11.80972 -11.59237 -11.53643 -11.39541 -11.21667 -10.85004 -10.72335 -10.51724 -10.36008 -10.06232 -9.81962 -8.86235 -7.75748 -5.19954 0.21822 0.42527 1.46581 1.49371 1.54829 1.55736 2.08631 2.50113 2.91580 3.26089 3.33197 3.49985 3.65618 3.81062 3.90977 3.92487 3.97439 3.99216 4.06742 4.12069 4.24647 4.29327 4.32744 4.40089 4.48161 4.52347 4.64053 4.66870 4.70956 4.76788 4.79268 4.83052 4.87583 4.92802 4.96081 5.00306 5.02702 5.10721 5.17571 5.24715 5.27117 5.33429 5.34971 5.37881 5.41344 5.46120 5.48323 5.52157 5.73866 5.84851 5.86252 6.33482 6.50857 7.05488 7.12582 7.18930 7.80525 8.44506 9.25448 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014201 B = 0.002386 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.161740 B =11730.907983 C =12890.055864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.102 4.102 4 C -0.050 4.050 5 H 0.127 0.873 6 C 0.519 3.481 7 O -0.569 6.569 8 N -0.710 5.710 9 C 0.146 3.854 10 C -0.089 4.089 11 H 0.096 0.904 12 C 0.138 3.862 13 N -0.629 5.629 14 C -0.237 4.237 15 H 0.080 0.920 16 C -0.068 4.068 17 N -0.948 5.948 18 Si 0.978 3.022 19 H -0.278 1.278 20 H -0.294 1.294 21 H -0.278 1.278 22 C 0.162 3.838 23 C -0.101 4.101 24 H 0.065 0.935 25 C -0.127 4.127 26 C 0.123 3.877 27 C -0.152 4.152 28 C -0.094 4.094 29 C -0.169 4.169 30 C 0.080 3.920 31 N -0.493 5.493 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.414 0.586 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.021 0.979 43 H 0.030 0.970 44 H 0.246 0.754 45 H -0.010 1.010 46 H 0.068 0.932 47 H 0.056 0.944 48 H 0.072 0.928 49 H 0.052 0.948 50 H 0.132 0.868 51 H 0.149 0.851 52 H 0.163 0.837 53 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.995 -22.356 -12.261 26.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.140 4.140 4 C -0.072 4.072 5 H 0.145 0.855 6 C 0.305 3.695 7 O -0.448 6.448 8 N -0.362 5.362 9 C 0.022 3.978 10 C -0.108 4.108 11 H 0.114 0.886 12 C 0.013 3.987 13 N -0.355 5.355 14 C -0.366 4.366 15 H 0.098 0.902 16 C -0.261 4.261 17 N -0.598 5.598 18 Si 0.806 3.194 19 H -0.204 1.204 20 H -0.220 1.220 21 H -0.204 1.204 22 C 0.037 3.963 23 C -0.121 4.121 24 H 0.083 0.917 25 C -0.185 4.185 26 C -0.014 4.014 27 C -0.172 4.172 28 C -0.120 4.120 29 C -0.188 4.188 30 C -0.077 4.077 31 N -0.202 5.202 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.250 0.750 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.039 0.961 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.008 0.992 46 H 0.086 0.914 47 H 0.075 0.925 48 H 0.091 0.909 49 H 0.071 0.929 50 H 0.150 0.850 51 H 0.166 0.834 52 H 0.181 0.819 53 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 6.286 -22.336 -12.027 26.135 hybrid contribution -1.013 1.382 -0.170 1.722 sum 5.273 -20.953 -12.197 24.812 Atomic orbital electron populations 1.21775 0.95219 1.02057 1.01934 1.21421 0.95963 0.95063 1.02510 1.21603 0.89896 0.99018 1.03513 1.20127 0.98178 0.91859 0.97024 0.85539 1.20617 0.79609 0.88000 0.81230 1.90669 1.39665 1.73829 1.40677 1.45905 1.53170 1.14008 1.23083 1.21194 0.99020 0.81298 0.96311 1.22335 0.94349 0.96798 0.97334 0.88623 1.21555 0.94502 0.87575 0.95062 1.44861 1.04442 1.21046 1.65167 1.19399 0.86014 1.01569 1.29665 0.90243 1.25616 1.00861 0.98707 1.00880 1.70053 1.27755 1.18890 1.43131 0.85156 0.79129 0.77415 0.77665 1.20357 1.22042 1.20448 1.21750 0.82829 0.99414 0.92356 1.22428 0.95711 0.94790 0.99171 0.91659 1.21600 0.94995 1.01850 1.00051 1.20547 0.96660 0.89921 0.94311 1.22356 0.99726 1.01467 0.93662 1.21942 0.95791 0.95942 0.98295 1.22467 1.00851 0.94577 1.00928 1.23193 0.95128 1.01460 0.87936 1.67382 1.11447 1.11329 1.30057 0.93294 0.92088 0.92127 0.92916 0.90833 0.89233 0.92161 0.74959 0.92787 0.90769 0.96062 0.95202 0.94408 0.99226 0.91439 0.92533 0.90918 0.92931 0.85019 0.83370 0.81943 0.80181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 71.98 0.71 -1.53 16 2 C -0.11 -1.79 5.72 30.60 0.17 -1.61 16 3 C -0.10 -1.75 4.62 30.59 0.14 -1.61 16 4 C -0.05 -1.00 2.52 -12.29 -0.03 -1.03 16 5 H 0.13 2.22 8.14 -2.38 -0.02 2.20 16 6 C 0.52 12.68 6.93 87.66 0.61 13.29 16 7 O -0.57 -17.76 13.13 -3.05 -0.04 -17.80 16 8 N -0.71 -15.76 5.33 -463.05 -2.47 -18.23 16 9 C 0.15 3.86 5.02 86.38 0.43 4.29 16 10 C -0.09 -2.70 2.43 -9.60 -0.02 -2.72 16 11 H 0.10 2.61 8.01 -2.39 -0.02 2.59 16 12 C 0.14 5.31 6.77 86.68 0.59 5.90 16 13 N -0.63 -31.87 3.40 -691.31 -2.35 -34.22 16 14 C -0.24 -13.23 10.28 84.03 0.86 -12.36 16 15 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 16 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 17 N -0.95 -56.48 10.09 21.65 0.22 -56.26 16 18 Si 0.98 45.58 29.55 68.60 2.03 47.60 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 22 C 0.16 7.80 5.35 86.85 0.47 8.27 16 23 C -0.10 -3.57 3.09 -9.40 -0.03 -3.60 16 24 H 0.06 2.39 8.05 -2.38 -0.02 2.37 16 25 C -0.13 -3.63 9.29 71.98 0.67 -2.96 16 26 C 0.12 2.81 4.88 42.55 0.21 3.02 16 27 C -0.15 -3.62 8.27 22.36 0.18 -3.43 16 28 C -0.09 -1.75 10.18 22.47 0.23 -1.52 16 29 C -0.17 -2.51 10.11 22.36 0.23 -2.28 16 30 C 0.08 1.33 11.18 84.67 0.95 2.27 16 31 N -0.49 -10.58 9.61 -183.89 -1.77 -12.35 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 35 H 0.05 0.98 6.89 -2.39 -0.02 0.97 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.09 1.33 7.43 -2.39 -0.02 1.31 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.41 7.33 7.83 -92.71 -0.73 6.60 16 40 H 0.05 1.64 7.93 -2.39 -0.02 1.62 16 41 H 0.07 1.91 8.14 -2.38 -0.02 1.90 16 42 H 0.02 0.84 7.68 -2.38 -0.02 0.82 16 43 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 45 H -0.01 -0.53 8.04 -2.39 -0.02 -0.55 16 46 H 0.07 3.79 5.86 -2.39 -0.01 3.78 16 47 H 0.06 1.56 8.11 -2.39 -0.02 1.54 16 48 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 49 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.13 3.55 5.97 -2.91 -0.02 3.53 16 51 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 52 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 53 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -71.20 417.99 2.61 -68.59 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.16 Total: 23.69 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 6.83 Total: -1.03 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -6.37 Total: -121.05 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.04 Total: -17.80 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -71.20 2.61 -68.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102282359.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.752 kcal (2) G-P(sol) polarization free energy of solvation -71.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds