Wall clock time and date at job start Wed Apr 1 2020 03:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47082 * 2 1 4 4 C 1.52998 * 109.47082 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47109 * 304.45724 * 4 3 2 6 6 C 1.50700 * 109.47185 * 184.46117 * 4 3 2 7 7 O 1.21286 * 119.99684 * 248.28389 * 6 4 3 8 8 N 1.34772 * 120.00689 * 68.27708 * 6 4 3 9 9 C 1.47030 * 125.64527 * 355.03189 * 8 6 4 10 10 C 1.54324 * 107.27162 * 178.89959 * 9 8 6 11 11 H 1.09000 * 110.71324 * 96.17009 * 10 9 8 12 12 C 1.52997 * 110.72147 * 219.44240 * 10 9 8 13 13 N 1.46495 * 109.47049 * 293.54780 * 12 10 9 14 14 C 1.36936 * 120.00010 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00099 * 0.02562 * 14 13 12 16 16 C 1.38808 * 120.00567 * 180.02562 * 14 13 12 17 17 N 1.31627 * 119.99848 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00533 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47397 * 89.99831 * 18 16 14 20 20 H 1.48505 * 109.47244 * 210.00034 * 18 16 14 21 21 H 1.48497 * 109.47120 * 330.00004 * 18 16 14 22 22 C 1.55155 * 102.94055 * 337.81084 * 10 9 8 23 23 H 1.09006 * 111.03550 * 277.40751 * 22 10 9 24 24 C 1.52998 * 111.00305 * 153.57306 * 22 10 9 25 25 C 1.47419 * 125.65206 * 174.98622 * 8 6 4 26 26 C 1.50698 * 109.47257 * 64.45311 * 4 3 2 27 27 C 1.38224 * 119.61560 * 85.00407 * 26 4 3 28 28 C 1.38629 * 119.16474 * 179.97438 * 27 26 4 29 29 C 1.38678 * 118.41688 * 359.97438 * 28 27 26 30 30 C 1.38176 * 119.16211 * 0.02562 * 29 28 27 31 31 N 1.31845 * 119.62307 * 264.72546 * 26 4 3 32 32 H 1.08999 * 109.47560 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47268 * 299.99996 * 1 2 3 34 34 H 1.09006 * 109.46795 * 60.00249 * 1 2 3 35 35 H 1.09002 * 109.47268 * 240.00004 * 2 1 3 36 36 H 1.09000 * 109.47217 * 119.99787 * 2 1 3 37 37 H 1.09002 * 109.47066 * 59.99880 * 3 2 1 38 38 H 1.09000 * 109.46920 * 299.99969 * 3 2 1 39 39 H 1.09000 * 109.87916 * 298.32354 * 9 8 6 40 40 H 1.09007 * 109.88036 * 59.48214 * 9 8 6 41 41 H 1.09001 * 109.47010 * 53.54969 * 12 10 9 42 42 H 1.08998 * 109.47057 * 173.54612 * 12 10 9 43 43 H 0.97001 * 120.00409 * 0.02562 * 13 12 10 44 44 H 0.96993 * 120.00427 * 179.97438 * 17 16 14 45 45 H 1.08991 * 109.47497 * 306.35035 * 24 22 10 46 46 H 1.09008 * 109.47035 * 66.34944 * 24 22 10 47 47 H 1.09004 * 109.47454 * 186.34344 * 24 22 10 48 48 H 1.08997 * 110.36811 * 323.00487 * 25 8 6 49 49 H 1.08997 * 110.36577 * 85.32955 * 25 8 6 50 50 H 1.08008 * 120.42331 * 359.97438 * 27 26 4 51 51 H 1.07998 * 120.79116 * 180.02562 * 28 27 26 52 52 H 1.08000 * 120.41343 * 180.02562 * 29 28 27 53 53 H 1.08002 * 119.61521 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9329 0.8612 0.8483 6 6 4.0723 2.8590 0.1112 7 8 4.6412 3.3756 -0.8272 8 7 3.8892 3.5520 1.2525 9 6 3.1307 3.0888 2.4238 10 6 3.2167 4.1980 3.4933 11 1 2.3375 4.8411 3.4533 12 6 3.3836 3.5930 4.8886 13 7 2.1684 2.8597 5.2514 14 6 2.0857 2.2289 6.4640 15 1 2.9161 2.2724 7.1531 16 6 0.9345 1.5337 6.8077 17 7 -0.0775 1.4802 5.9678 18 14 0.8214 0.6739 8.4622 19 1 0.2584 1.6093 9.4688 20 1 -0.0609 -0.5147 8.3431 21 1 2.1766 0.2434 8.8900 22 6 4.4898 4.9822 3.0790 23 1 5.3893 4.4944 3.4545 24 6 4.4180 6.4347 3.5542 25 6 4.4171 4.8994 1.5338 26 6 4.0729 0.8296 -1.2809 27 6 4.2024 1.6167 -2.4097 28 6 4.6664 1.0434 -3.5835 29 6 4.9847 -0.3063 -3.5778 30 6 4.8295 -1.0298 -2.4109 31 7 4.3894 -0.4499 -1.3111 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8901 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 1.6766 1.9564 0.8900 38 1 1.6766 1.9563 -0.8900 39 1 2.0898 2.9195 2.1480 40 1 3.5688 2.1679 2.8087 41 1 4.2336 2.9106 4.8894 42 1 3.5567 4.3898 5.6118 43 1 1.4226 2.8203 4.6324 44 1 -0.8818 0.9941 6.2077 45 1 3.4908 6.8868 3.2024 46 1 4.4452 6.4623 4.6436 47 1 5.2672 6.9899 3.1555 48 1 5.4104 5.0157 1.1005 49 1 3.7410 5.6605 1.1445 50 1 3.9453 2.6653 -2.3778 51 1 4.7781 1.6340 -4.4808 52 1 5.3494 -0.7859 -4.4742 53 1 5.0748 -2.0815 -2.3983 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106588658.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:23 Heat of formation + Delta-G solvation = -12.186168 kcal Electronic energy + Delta-G solvation = -31290.154695 eV Core-core repulsion = 27353.924056 eV Total energy + Delta-G solvation = -3936.230639 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.01039 -40.76007 -39.15373 -36.84998 -36.39183 -34.26580 -33.41374 -33.18387 -32.93826 -30.57427 -30.31148 -27.52538 -27.07860 -25.90951 -24.86945 -24.46313 -23.46321 -22.43790 -21.79074 -21.23030 -20.36848 -19.11891 -18.24417 -17.79047 -17.48506 -16.87305 -16.78250 -16.56217 -16.20393 -16.12091 -15.45565 -15.28834 -15.11883 -14.99821 -14.91497 -14.48159 -14.24899 -14.16535 -14.02509 -13.82178 -13.63465 -13.37206 -13.31914 -13.15966 -13.04047 -12.88872 -12.71758 -12.54163 -12.39051 -12.12521 -12.10653 -12.01552 -11.91835 -11.85541 -11.66932 -11.43649 -11.30305 -10.93154 -10.86968 -10.53184 -10.34831 -9.87817 -9.69603 -8.94251 -7.90581 -5.18188 0.19273 0.42349 1.40429 1.50562 1.50830 1.59038 1.82213 2.58980 2.88302 3.14450 3.26746 3.42483 3.50129 3.60224 3.76837 3.88426 3.93299 3.97182 4.07657 4.15082 4.21730 4.24021 4.27061 4.31115 4.41233 4.45089 4.50938 4.53170 4.62365 4.65297 4.69129 4.72902 4.79602 4.84594 4.88323 4.90432 4.93989 5.01119 5.04898 5.12918 5.19188 5.21737 5.24671 5.25288 5.31168 5.35507 5.37535 5.42180 5.51409 5.55897 5.83724 6.31617 6.36734 6.95450 7.08091 7.39330 8.13947 8.37775 9.32272 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009923 B = 0.003231 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.037867 B = 8663.640645 C =10644.014213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C -0.102 4.102 4 C -0.050 4.050 5 H 0.102 0.898 6 C 0.538 3.462 7 O -0.560 6.560 8 N -0.609 5.609 9 C 0.109 3.891 10 C -0.091 4.091 11 H 0.088 0.912 12 C 0.166 3.834 13 N -0.742 5.742 14 C -0.242 4.242 15 H 0.073 0.927 16 C -0.069 4.069 17 N -0.963 5.963 18 Si 0.965 3.035 19 H -0.288 1.288 20 H -0.297 1.297 21 H -0.272 1.272 22 C -0.087 4.087 23 H 0.086 0.914 24 C -0.135 4.135 25 C 0.111 3.889 26 C 0.119 3.881 27 C -0.153 4.153 28 C -0.090 4.090 29 C -0.166 4.166 30 C 0.077 3.923 31 N -0.502 5.502 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.019 0.981 42 H 0.029 0.971 43 H 0.376 0.624 44 H 0.250 0.750 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.079 0.921 50 H 0.146 0.854 51 H 0.156 0.844 52 H 0.166 0.834 53 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.037 2.911 -18.645 20.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.140 4.140 4 C -0.072 4.072 5 H 0.120 0.880 6 C 0.327 3.673 7 O -0.440 6.440 8 N -0.341 5.341 9 C -0.014 4.014 10 C -0.110 4.110 11 H 0.106 0.894 12 C 0.039 3.961 13 N -0.385 5.385 14 C -0.374 4.374 15 H 0.091 0.909 16 C -0.262 4.262 17 N -0.614 5.614 18 Si 0.795 3.205 19 H -0.216 1.216 20 H -0.224 1.224 21 H -0.197 1.197 22 C -0.107 4.107 23 H 0.104 0.896 24 C -0.192 4.192 25 C -0.010 4.010 26 C -0.018 4.018 27 C -0.172 4.172 28 C -0.116 4.116 29 C -0.185 4.185 30 C -0.080 4.080 31 N -0.211 5.211 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.037 0.963 42 H 0.047 0.953 43 H 0.208 0.792 44 H 0.059 0.941 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.093 0.907 48 H 0.096 0.904 49 H 0.097 0.903 50 H 0.164 0.836 51 H 0.174 0.826 52 H 0.184 0.816 53 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 9.338 2.594 -18.270 20.681 hybrid contribution -0.476 -0.268 0.265 0.607 sum 8.862 2.326 -18.005 20.202 Atomic orbital electron populations 1.21744 0.94962 1.02101 1.01881 1.21373 0.96250 0.95267 1.01870 1.21630 0.90115 0.98914 1.03364 1.20014 0.98233 0.92096 0.96836 0.87956 1.20107 0.78607 0.87650 0.80975 1.90587 1.44955 1.71544 1.36943 1.48505 1.52447 1.18453 1.14718 1.22223 0.96163 0.98089 0.84886 1.22379 0.99507 0.95936 0.93217 0.89358 1.20740 0.88771 0.93548 0.93014 1.42512 1.15813 1.61996 1.18176 1.19558 0.99385 1.23997 0.94483 0.90916 1.25433 0.96577 1.02712 1.01477 1.69782 1.06033 1.48268 1.37293 0.85269 0.77399 0.77659 0.80211 1.21572 1.22380 1.19733 1.22334 0.97322 0.97861 0.93191 0.89586 1.21666 1.02875 0.92987 1.01697 1.22431 0.99820 0.83162 0.95609 1.20471 0.97092 0.90049 0.94186 1.22591 0.99455 1.02033 0.93161 1.21995 0.95589 0.95656 0.98360 1.22494 1.00600 0.94861 1.00593 1.23182 0.95356 1.01392 0.88030 1.67356 1.11493 1.11371 1.30873 0.92189 0.93169 0.92029 0.92237 0.92648 0.90240 0.91046 0.90757 0.91890 0.96308 0.95278 0.79154 0.94099 0.91915 0.92002 0.90700 0.90395 0.90259 0.83624 0.82609 0.81614 0.80503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.91 71.98 0.71 -2.93 16 2 C -0.11 -2.88 5.71 30.59 0.17 -2.71 16 3 C -0.10 -2.66 4.58 30.59 0.14 -2.52 16 4 C -0.05 -1.40 1.95 -12.29 -0.02 -1.42 16 5 H 0.10 3.08 8.07 -2.38 -0.02 3.06 16 6 C 0.54 15.78 7.03 87.66 0.62 16.39 16 7 O -0.56 -18.20 13.13 -3.05 -0.04 -18.24 16 8 N -0.61 -16.50 3.33 -811.79 -2.70 -19.20 16 9 C 0.11 3.15 5.26 86.73 0.46 3.61 16 10 C -0.09 -2.57 2.49 -9.61 -0.02 -2.59 16 11 H 0.09 2.52 8.01 -2.39 -0.02 2.50 16 12 C 0.17 6.01 5.58 86.38 0.48 6.49 16 13 N -0.74 -35.16 5.45 -343.47 -1.87 -37.03 16 14 C -0.24 -13.00 9.99 84.03 0.84 -12.16 16 15 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 16 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 17 N -0.96 -56.77 13.06 21.65 0.28 -56.49 16 18 Si 0.96 45.19 29.55 68.60 2.03 47.22 16 19 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 20 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 22 C -0.09 -1.93 3.09 -9.40 -0.03 -1.96 16 23 H 0.09 1.93 8.05 -2.38 -0.02 1.91 16 24 C -0.13 -2.41 9.29 71.98 0.67 -1.74 16 25 C 0.11 2.56 6.36 86.86 0.55 3.11 16 26 C 0.12 3.34 4.90 42.55 0.21 3.55 16 27 C -0.15 -3.95 8.35 22.36 0.19 -3.77 16 28 C -0.09 -1.78 10.18 22.47 0.23 -1.55 16 29 C -0.17 -2.82 10.11 22.36 0.23 -2.60 16 30 C 0.08 1.61 11.18 84.67 0.95 2.55 16 31 N -0.50 -13.71 9.62 -183.90 -1.77 -15.48 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.32 8.14 -2.38 -0.02 1.31 16 35 H 0.06 1.58 6.88 -2.39 -0.02 1.56 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 37 H 0.08 2.15 5.04 -2.39 -0.01 2.14 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 39 H 0.07 2.22 5.80 -2.39 -0.01 2.20 16 40 H 0.06 2.04 7.71 -2.38 -0.02 2.02 16 41 H 0.02 0.70 8.06 -2.39 -0.02 0.69 16 42 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.38 18.79 7.52 -92.71 -0.70 18.09 16 44 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 45 H 0.06 1.08 8.11 -2.39 -0.02 1.06 16 46 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 47 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 48 H 0.08 1.78 8.09 -2.39 -0.02 1.76 16 49 H 0.08 1.67 8.04 -2.39 -0.02 1.66 16 50 H 0.15 4.05 5.65 -2.91 -0.02 4.04 16 51 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 52 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 53 H 0.18 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -66.38 417.39 2.95 -63.42 By element: Atomic # 1 Polarization: 39.21 SS G_CDS: 0.19 Total: 39.40 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 6.83 Total: -3.62 kcal Atomic # 7 Polarization: -122.14 SS G_CDS: -6.06 Total: -128.20 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.04 Total: -18.24 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -66.38 2.95 -63.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106588658.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.239 kcal (2) G-P(sol) polarization free energy of solvation -66.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds