Wall clock time and date at job start Wed Apr 1 2020 04:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46894 * 109.47235 * 296.81402 * 3 2 1 5 5 C 1.48674 * 111.11193 * 285.41895 * 4 3 2 6 6 C 1.54381 * 104.67440 * 201.09803 * 5 4 3 7 7 C 1.54266 * 105.05876 * 23.77252 * 6 5 4 8 8 C 1.48564 * 111.00244 * 169.99949 * 4 3 2 9 9 H 1.09009 * 110.40892 * 40.14467 * 8 4 3 10 10 C 1.50697 * 110.41308 * 277.82384 * 8 4 3 11 11 O 1.21280 * 119.99753 * 1.64206 * 10 8 4 12 12 N 1.34779 * 120.00097 * 181.64930 * 10 8 4 13 13 C 1.48120 * 127.84208 * 0.02562 * 12 10 8 14 14 C 1.54325 * 104.69558 * 140.22416 * 13 12 10 15 15 H 1.09001 * 112.59174 * 262.03930 * 14 13 12 16 16 C 1.54161 * 108.86290 * 137.44797 * 14 13 12 17 17 C 1.54847 * 104.32552 * 271.24397 * 16 14 13 18 18 C 1.55780 * 102.31036 * 321.12865 * 17 16 14 19 19 C 1.54158 * 103.88571 * 39.34921 * 18 17 16 20 20 C 1.52996 * 111.82395 * 212.54251 * 19 18 17 21 21 N 1.46504 * 109.46681 * 299.25412 * 20 19 18 22 22 C 1.36943 * 119.99781 * 180.02562 * 21 20 19 23 23 H 1.08002 * 119.99788 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99622 * 180.27904 * 22 21 20 25 25 N 1.31614 * 120.00467 * 359.72375 * 24 22 21 26 26 Si 1.86801 * 119.99700 * 179.72266 * 24 22 21 27 27 H 1.48496 * 109.47031 * 59.99836 * 26 24 22 28 28 H 1.48497 * 109.47267 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.47169 * 300.00118 * 26 24 22 30 30 C 1.48121 * 127.84402 * 179.97438 * 12 10 8 31 31 H 4.40885 * 5.52252 * 179.97438 * 4 1 2 32 32 H 1.09002 * 109.46855 * 176.81736 * 3 2 1 33 33 H 1.09001 * 109.47358 * 56.81854 * 3 2 1 34 34 H 1.08999 * 110.44125 * 82.26354 * 5 4 3 35 35 H 1.08999 * 110.40534 * 319.91801 * 5 4 3 36 36 H 1.08996 * 110.32385 * 264.87853 * 6 5 4 37 37 H 1.08998 * 110.32087 * 142.66538 * 6 5 4 38 38 H 1.09000 * 110.31884 * 241.09907 * 7 6 5 39 39 H 1.08997 * 110.41144 * 118.94231 * 7 6 5 40 40 H 1.08997 * 110.39341 * 21.41369 * 13 12 10 41 41 H 1.09005 * 110.48601 * 259.07440 * 13 12 10 42 42 H 1.08996 * 110.45898 * 29.94820 * 16 14 13 43 43 H 1.08996 * 110.46221 * 152.40490 * 16 14 13 44 44 H 1.08999 * 110.76130 * 80.11908 * 17 16 14 45 45 H 1.08999 * 110.75455 * 203.31816 * 17 16 14 46 46 H 1.09003 * 111.74556 * 280.25281 * 18 17 16 47 47 H 1.08997 * 109.59828 * 157.40450 * 18 17 16 48 48 H 1.09006 * 109.47179 * 179.26029 * 20 19 18 49 49 H 1.08997 * 109.47540 * 59.25491 * 20 19 18 50 50 H 0.97000 * 120.00410 * 0.02562 * 21 20 19 51 51 H 0.96995 * 120.00147 * 180.02562 * 25 24 22 52 52 H 1.08992 * 110.39000 * 100.97114 * 30 12 10 53 53 H 1.08999 * 110.38471 * 338.57595 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1360 -0.6239 1.2360 5 6 2.9664 0.2861 2.3994 6 6 3.9698 -0.2331 3.4515 7 6 5.0454 -0.9865 2.6420 8 6 4.6013 -0.8592 1.1690 9 1 5.1005 -0.0151 0.6931 10 6 4.8953 -2.1330 0.4194 11 8 3.9862 -2.7829 -0.0518 12 7 6.1686 -2.5502 0.2729 13 6 7.4014 -1.8990 0.7729 14 6 8.2893 -3.0634 1.2600 15 1 8.2237 -3.2179 2.3370 16 6 9.7399 -2.8082 0.8049 17 6 9.8208 -3.4570 -0.5988 18 6 8.9731 -4.7510 -0.4160 19 6 7.7933 -4.2987 0.4672 20 6 7.3150 -5.4179 1.3942 21 7 6.8595 -6.5556 0.5915 22 6 6.3832 -7.6818 1.2082 23 1 6.3438 -7.7313 2.2863 24 6 5.9570 -8.7619 0.4476 25 7 6.0055 -8.7018 -0.8663 26 14 5.3146 -10.3010 1.2890 27 1 4.1309 -9.9554 2.1163 28 1 4.9254 -11.3007 0.2622 29 1 6.3763 -10.8703 2.1574 30 6 6.6525 -3.7643 -0.4239 31 1 -1.0499 0.0001 0.0003 32 1 3.0088 1.0269 -0.0571 33 1 3.0096 -0.5616 -0.8601 34 1 1.9481 0.2270 2.7837 35 1 3.2069 1.3114 2.1182 36 1 3.4737 -0.9117 4.1453 37 1 4.4177 0.6012 3.9915 38 1 5.0772 -2.0349 2.9387 39 1 6.0220 -0.5238 2.7844 40 1 7.1680 -1.2278 1.5994 41 1 7.8972 -1.3534 -0.0301 42 1 9.9367 -1.7380 0.7418 43 1 10.4430 -3.2846 1.4880 44 1 9.3898 -2.7995 -1.3538 45 1 10.8515 -3.7075 -0.8497 46 1 9.5403 -5.5387 0.0800 47 1 8.6134 -5.0927 -1.3866 48 1 6.4914 -5.0539 2.0086 49 1 8.1365 -5.7330 2.0376 50 1 6.8952 -6.5113 -0.3769 51 1 5.7074 -9.4564 -1.3977 52 1 7.0315 -3.5087 -1.4133 53 1 5.8536 -4.5018 -0.5010 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112404329.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:42 Heat of formation + Delta-G solvation = 24.762291 kcal Electronic energy + Delta-G solvation = -31832.404770 eV Core-core repulsion = 27897.776337 eV Total energy + Delta-G solvation = -3934.628433 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.87097 -40.56632 -38.73463 -36.49786 -35.64419 -34.96595 -33.50617 -32.20874 -31.34154 -30.83180 -29.85668 -27.31155 -27.08077 -26.49274 -25.47884 -23.79151 -22.82627 -22.06381 -21.09714 -20.27128 -19.82982 -19.21956 -19.03756 -17.97340 -17.25112 -17.11495 -16.80815 -16.55825 -15.96090 -15.61254 -15.50791 -15.46553 -15.20037 -15.12682 -15.02746 -14.67262 -14.29885 -13.97631 -13.77745 -13.61168 -13.43600 -13.17609 -13.09567 -13.06657 -12.92550 -12.73475 -12.52248 -12.25043 -12.18645 -12.11255 -11.74148 -11.72585 -11.65501 -11.56342 -11.50318 -11.44244 -11.39369 -11.26959 -11.12438 -10.95736 -10.74744 -9.68925 -9.52664 -9.01582 -7.97805 -5.25997 1.41102 1.45799 1.51390 1.58474 1.67976 1.87491 1.95343 2.52570 3.08635 3.27718 3.34979 3.44442 3.52365 3.54249 3.69197 3.73038 3.93199 4.00508 4.17946 4.20269 4.23250 4.25133 4.27170 4.30176 4.43217 4.46732 4.48382 4.50619 4.55789 4.64476 4.76691 4.78043 4.80031 4.87541 4.92002 4.98037 5.01316 5.05288 5.08991 5.13021 5.15469 5.22517 5.23897 5.33142 5.33701 5.40631 5.43213 5.54388 5.57152 5.74422 5.89348 6.24239 6.65144 6.67076 7.22958 7.30475 8.07381 8.30602 9.25647 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008876 B = 0.003530 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.714225 B = 7929.223926 C = 9830.395861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.213 4.213 3 C 0.157 3.843 4 N -0.522 5.522 5 C 0.036 3.964 6 C -0.116 4.116 7 C -0.111 4.111 8 C 0.060 3.940 9 H 0.113 0.887 10 C 0.527 3.473 11 O -0.582 6.582 12 N -0.619 5.619 13 C 0.102 3.898 14 C -0.092 4.092 15 H 0.092 0.908 16 C -0.103 4.103 17 C -0.116 4.116 18 C -0.107 4.107 19 C -0.070 4.070 20 C 0.175 3.825 21 N -0.739 5.739 22 C -0.249 4.249 23 H 0.071 0.929 24 C -0.074 4.074 25 N -0.968 5.968 26 Si 0.973 3.027 27 H -0.284 1.284 28 H -0.292 1.292 29 H -0.272 1.272 30 C 0.121 3.879 31 H 0.247 0.753 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.109 0.891 38 H 0.050 0.950 39 H 0.121 0.879 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.057 0.943 47 H 0.044 0.956 48 H -0.004 1.004 49 H 0.025 0.975 50 H 0.374 0.626 51 H 0.251 0.749 52 H 0.077 0.923 53 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.516 28.360 6.472 29.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.214 4.214 3 C 0.031 3.969 4 N -0.246 5.246 5 C -0.091 4.091 6 C -0.154 4.154 7 C -0.149 4.149 8 C -0.051 4.051 9 H 0.131 0.869 10 C 0.316 3.684 11 O -0.460 6.460 12 N -0.352 5.352 13 C -0.019 4.019 14 C -0.111 4.111 15 H 0.110 0.890 16 C -0.141 4.141 17 C -0.153 4.153 18 C -0.145 4.145 19 C -0.071 4.071 20 C 0.049 3.951 21 N -0.381 5.381 22 C -0.381 4.381 23 H 0.088 0.912 24 C -0.266 4.266 25 N -0.619 5.619 26 Si 0.801 3.199 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.198 1.198 30 C -0.002 4.002 31 H 0.263 0.737 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.069 0.931 39 H 0.139 0.861 40 H 0.128 0.872 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.076 0.924 47 H 0.062 0.938 48 H 0.014 0.986 49 H 0.043 0.957 50 H 0.206 0.794 51 H 0.060 0.940 52 H 0.095 0.905 53 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 4.586 27.472 6.442 28.587 hybrid contribution -0.847 -1.365 -0.647 1.732 sum 3.739 26.107 5.795 27.002 Atomic orbital electron populations 1.25685 0.96783 1.00104 0.98557 1.23243 0.95016 1.01121 1.02017 1.19110 0.85678 0.98912 0.93220 1.64890 1.12724 1.43237 1.03798 1.23249 1.00789 0.94809 0.90270 1.22313 0.95262 1.00753 0.97076 1.22385 1.01071 1.01454 0.89979 1.22572 0.90112 0.94193 0.98270 0.86918 1.20820 0.80493 0.87486 0.79574 1.90736 1.45634 1.58612 1.51027 1.49039 1.05842 1.25219 1.55141 1.22975 0.82812 0.95328 1.00798 1.22735 0.96421 0.92015 0.99975 0.88967 1.22348 0.93528 1.02384 0.95830 1.22651 0.99754 0.94812 0.98071 1.22430 0.95446 0.98668 0.97947 1.22139 0.94561 0.94937 0.95468 1.20663 0.94830 0.86801 0.92840 1.42499 1.76325 1.13859 1.05462 1.19573 1.33533 0.93283 0.91665 0.91154 1.25554 1.03240 1.01736 0.96089 1.69808 1.55036 1.32239 1.04779 0.85230 0.78327 0.79223 0.77113 1.21056 1.21838 1.19753 1.22250 0.95736 0.86749 0.95491 0.73680 0.89316 0.90727 0.90763 0.90928 0.91874 0.87250 0.93146 0.86119 0.87201 0.88196 0.87958 0.90813 0.90567 0.90344 0.92386 0.93763 0.98598 0.95703 0.79382 0.94022 0.90526 0.94810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.38 19.25 74.32 1.43 -2.94 16 2 C -0.21 -5.62 13.25 31.12 0.41 -5.20 16 3 C 0.16 3.80 5.13 84.50 0.43 4.23 16 4 N -0.52 -13.14 4.58 -871.73 -3.99 -17.14 16 5 C 0.04 0.61 6.11 86.43 0.53 1.13 16 6 C -0.12 -1.62 7.00 31.49 0.22 -1.40 16 7 C -0.11 -1.83 5.45 31.49 0.17 -1.66 16 8 C 0.06 1.29 2.13 44.31 0.09 1.39 16 9 H 0.11 1.61 7.99 -2.38 -0.02 1.59 16 10 C 0.53 17.41 6.92 87.66 0.61 18.02 16 11 O -0.58 -26.93 16.10 -3.03 -0.05 -26.98 16 12 N -0.62 -17.81 3.31 -808.38 -2.68 -20.49 16 13 C 0.10 1.70 6.16 86.52 0.53 2.24 16 14 C -0.09 -1.85 3.58 -9.29 -0.03 -1.88 16 15 H 0.09 1.83 7.88 -2.39 -0.02 1.81 16 16 C -0.10 -1.47 6.08 31.62 0.19 -1.28 16 17 C -0.12 -2.13 6.86 32.19 0.22 -1.91 16 18 C -0.11 -3.16 5.19 31.95 0.17 -2.99 16 19 C -0.07 -2.20 0.62 -50.69 -0.03 -2.23 16 20 C 0.18 7.48 5.14 86.38 0.44 7.92 16 21 N -0.74 -40.26 4.93 -343.44 -1.69 -41.95 16 22 C -0.25 -14.94 9.99 84.03 0.84 -14.10 16 23 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 24 C -0.07 -4.52 5.50 84.86 0.47 -4.05 16 25 N -0.97 -62.72 13.06 21.65 0.28 -62.44 16 26 Si 0.97 49.10 29.55 68.60 2.03 51.12 16 27 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 28 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 29 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 30 C 0.12 4.30 5.81 86.51 0.50 4.80 16 31 H 0.25 3.48 7.80 -4.42 -0.03 3.45 16 32 H 0.09 1.48 7.77 -2.39 -0.02 1.46 16 33 H 0.07 2.15 7.35 -2.39 -0.02 2.14 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 0.86 7.76 -2.39 -0.02 0.84 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.05 1.17 7.85 -2.39 -0.02 1.15 16 39 H 0.12 0.99 6.59 -2.39 -0.02 0.97 16 40 H 0.11 1.14 5.06 -2.39 -0.01 1.13 16 41 H 0.10 1.19 7.61 -2.38 -0.02 1.17 16 42 H 0.10 0.80 7.74 -2.39 -0.02 0.78 16 43 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.06 1.92 7.96 -2.39 -0.02 1.90 16 47 H 0.04 1.49 7.79 -2.39 -0.02 1.47 16 48 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 49 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.37 21.62 6.91 -92.71 -0.64 20.98 16 51 H 0.25 15.76 8.31 -92.71 -0.77 14.99 16 52 H 0.08 2.48 7.67 -2.39 -0.02 2.46 16 53 H 0.03 1.62 6.99 -2.39 -0.02 1.61 16 Total: -1.00 -87.27 413.01 1.34 -85.92 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.25 Total: 31.87 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 7.20 Total: 0.08 kcal Atomic # 7 Polarization: -133.94 SS G_CDS: -8.08 Total: -142.02 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.05 Total: -26.98 kcal Atomic # 14 Polarization: 49.10 SS G_CDS: 2.03 Total: 51.12 kcal Total: -87.27 1.34 -85.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112404329.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.685 kcal (2) G-P(sol) polarization free energy of solvation -87.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds