Wall clock time and date at job start Wed Apr 1 2020 04:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47629 * 2 1 4 4 N 1.46504 * 109.47009 * 120.00257 * 2 1 3 5 5 C 1.35528 * 125.68108 * 304.01114 * 4 2 1 6 6 C 1.35445 * 108.87585 * 179.97438 * 5 4 2 7 7 C 1.39843 * 107.86215 * 359.73882 * 6 5 4 8 8 C 1.37655 * 125.67529 * 123.99234 * 4 2 1 9 9 C 1.46677 * 126.23570 * 0.02562 * 8 4 2 10 10 O 1.21699 * 119.99870 * 352.00441 * 9 8 4 11 11 N 1.34776 * 119.99939 * 172.00300 * 9 8 4 12 12 C 1.48110 * 127.84372 * 353.16963 * 11 9 8 13 13 C 1.54328 * 104.69546 * 219.48606 * 12 11 9 14 14 H 1.08999 * 111.85337 * 213.63792 * 13 12 11 15 15 C 1.54160 * 108.86523 * 89.55881 * 13 12 11 16 16 C 1.54838 * 104.33176 * 271.23333 * 15 13 12 17 17 C 1.54844 * 102.73340 * 321.81081 * 16 15 13 18 18 C 1.54163 * 104.32420 * 38.19290 * 17 16 15 19 19 C 1.53002 * 111.82373 * 213.78551 * 18 17 16 20 20 N 1.46491 * 109.47145 * 299.26562 * 19 18 17 21 21 C 1.36938 * 119.99668 * 180.02562 * 20 19 18 22 22 H 1.07996 * 120.00697 * 359.97438 * 21 20 19 23 23 C 1.38818 * 120.00047 * 179.97438 * 21 20 19 24 24 N 1.31624 * 119.99759 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00180 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47136 * 89.99688 * 25 23 21 27 27 H 1.48507 * 109.47049 * 209.99835 * 25 23 21 28 28 H 1.48497 * 109.46876 * 329.99634 * 25 23 21 29 29 C 1.48119 * 127.84016 * 172.84999 * 11 9 8 30 30 H 1.09002 * 109.47177 * 65.35144 * 1 2 3 31 31 H 1.08999 * 109.47121 * 185.35763 * 1 2 3 32 32 H 1.09001 * 109.46634 * 305.35262 * 1 2 3 33 33 H 1.09003 * 109.46932 * 239.99707 * 2 1 3 34 34 H 1.08988 * 109.47712 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47190 * 300.00723 * 3 2 1 36 36 H 1.09004 * 109.46739 * 59.99615 * 3 2 1 37 37 H 1.08004 * 125.56092 * 0.02562 * 5 4 2 38 38 H 1.07997 * 126.07124 * 179.97438 * 6 5 4 39 39 H 1.07998 * 126.45713 * 180.30885 * 7 6 5 40 40 H 1.08994 * 110.39635 * 338.29423 * 12 11 9 41 41 H 1.09000 * 110.39009 * 100.68584 * 12 11 9 42 42 H 1.09005 * 110.45800 * 29.93993 * 15 13 12 43 43 H 1.09000 * 110.46329 * 152.38360 * 15 13 12 44 44 H 1.08993 * 110.76481 * 80.12318 * 16 15 13 45 45 H 1.09004 * 110.75876 * 203.50388 * 16 15 13 46 46 H 1.09003 * 110.46439 * 156.89978 * 17 16 15 47 47 H 1.08998 * 110.46783 * 279.35670 * 17 16 15 48 48 H 1.09007 * 109.46643 * 59.26199 * 19 18 17 49 49 H 1.09001 * 109.46877 * 179.25657 * 19 18 17 50 50 H 0.96996 * 120.00287 * 359.97438 * 20 19 18 51 51 H 0.96997 * 119.99545 * 180.02562 * 24 23 21 52 52 H 1.08995 * 110.39631 * 259.32585 * 29 11 9 53 53 H 1.09001 * 110.39564 * 21.71868 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.7012 -0.3757 2.4757 6 6 2.3395 -1.2320 3.3087 7 6 3.0804 -2.1215 2.5243 8 6 2.8753 -1.7679 1.2076 9 6 3.4589 -2.4240 0.0327 10 8 3.0851 -2.1170 -1.0840 11 7 4.4091 -3.3668 0.1899 12 6 5.0873 -3.7735 1.4423 13 6 6.5578 -4.0034 1.0343 14 1 7.0175 -4.8069 1.6096 15 6 7.3297 -2.6774 1.1835 16 6 7.1570 -1.9771 -0.1866 17 6 7.2475 -3.1561 -1.1863 18 6 6.5050 -4.3099 -0.4835 19 6 7.1243 -5.6695 -0.8136 20 7 7.0462 -5.9040 -2.2575 21 6 7.5408 -7.0644 -2.7904 22 1 7.9887 -7.8066 -2.1463 23 6 7.4664 -7.2869 -4.1586 24 7 6.9200 -6.3826 -4.9436 25 14 8.1416 -8.8696 -4.8856 26 1 7.0714 -9.8987 -4.9112 27 1 8.6171 -8.6153 -6.2694 28 1 9.2733 -9.3528 -4.0544 29 6 5.0075 -4.2360 -0.8495 30 1 -0.3633 0.4286 -0.9340 31 1 -0.3633 -1.0232 0.0960 32 1 -0.3632 0.5946 0.8382 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.0459 0.4266 2.7811 38 1 2.2830 -1.2306 4.3872 39 1 3.6985 -2.9315 2.8824 40 1 5.0191 -2.9797 2.1861 41 1 4.6516 -4.6951 1.8281 42 1 6.8954 -2.0712 1.9786 43 1 8.3834 -2.8704 1.3850 44 1 6.1845 -1.4893 -0.2515 45 1 7.9614 -1.2619 -0.3590 46 1 6.7532 -2.8999 -2.1235 47 1 8.2885 -3.4241 -1.3664 48 1 8.1682 -5.6790 -0.4998 49 1 6.5798 -6.4540 -0.2880 50 1 6.6436 -5.2376 -2.8360 51 1 6.8678 -6.5383 -5.8996 52 1 4.5594 -5.2291 -0.8183 53 1 4.8793 -3.7913 -1.8364 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112579515.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:19 Heat of formation + Delta-G solvation = 14.611049 kcal Electronic energy + Delta-G solvation = -31951.801063 eV Core-core repulsion = 28016.732439 eV Total energy + Delta-G solvation = -3935.068624 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.58345 -41.54006 -39.32630 -36.70990 -36.28079 -35.32845 -33.51523 -31.48421 -31.05993 -30.73521 -29.86789 -28.28294 -27.15411 -26.52904 -25.55817 -23.86545 -23.38560 -22.53297 -21.60382 -20.97557 -20.14680 -19.64173 -19.00621 -18.07311 -17.46085 -17.21258 -16.53522 -16.24682 -16.08974 -15.74913 -15.66942 -15.18871 -15.14704 -15.00434 -14.87584 -14.79456 -14.29957 -14.09881 -14.03329 -13.65573 -13.56804 -13.49085 -13.20607 -13.16396 -13.05010 -12.95185 -12.72958 -12.57836 -12.34008 -12.16986 -12.11134 -11.99637 -11.86210 -11.75157 -11.65689 -11.56822 -11.49286 -11.35181 -10.92613 -10.89513 -9.78622 -9.64641 -9.11186 -8.97190 -7.92981 -5.21650 0.49524 1.46738 1.48809 1.53815 1.57160 1.87421 2.21842 2.35046 2.56662 3.26630 3.40205 3.48051 3.58800 3.64589 3.72676 3.93024 4.13474 4.14845 4.17790 4.19159 4.21425 4.25835 4.37492 4.41820 4.45835 4.53575 4.57156 4.61421 4.64316 4.68614 4.70173 4.71886 4.73875 4.89281 4.93402 4.94818 4.98956 5.03458 5.05725 5.13803 5.13897 5.20698 5.24031 5.31552 5.32645 5.36323 5.44292 5.45996 5.52142 5.90884 6.07534 6.28279 6.38383 6.54310 7.06486 7.34682 8.11958 8.33912 9.30789 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.016011 B = 0.002799 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.387284 B =10000.939218 C =10742.981256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.096 3.904 3 C -0.150 4.150 4 N -0.408 5.408 5 C 0.025 3.975 6 C -0.215 4.215 7 C -0.143 4.143 8 C -0.083 4.083 9 C 0.596 3.404 10 O -0.600 6.600 11 N -0.602 5.602 12 C 0.091 3.909 13 C -0.090 4.090 14 H 0.122 0.878 15 C -0.104 4.104 16 C -0.115 4.115 17 C -0.103 4.103 18 C -0.066 4.066 19 C 0.173 3.827 20 N -0.744 5.744 21 C -0.239 4.239 22 H 0.080 0.920 23 C -0.080 4.080 24 N -0.973 5.973 25 Si 0.973 3.027 26 H -0.289 1.289 27 H -0.299 1.299 28 H -0.266 1.266 29 C 0.131 3.869 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.197 0.803 38 H 0.169 0.831 39 H 0.171 0.829 40 H 0.119 0.881 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.042 0.958 45 H 0.070 0.930 46 H 0.029 0.971 47 H 0.061 0.939 48 H 0.033 0.967 49 H 0.029 0.971 50 H 0.372 0.628 51 H 0.249 0.751 52 H 0.063 0.937 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.160 15.955 23.222 29.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.005 4.005 3 C -0.207 4.207 4 N -0.081 5.081 5 C -0.111 4.111 6 C -0.238 4.238 7 C -0.169 4.169 8 C -0.196 4.196 9 C 0.389 3.611 10 O -0.484 6.484 11 N -0.332 5.332 12 C -0.030 4.030 13 C -0.109 4.109 14 H 0.140 0.860 15 C -0.141 4.141 16 C -0.153 4.153 17 C -0.141 4.141 18 C -0.067 4.067 19 C 0.047 3.953 20 N -0.386 5.386 21 C -0.371 4.371 22 H 0.098 0.902 23 C -0.272 4.272 24 N -0.624 5.624 25 Si 0.803 3.197 26 H -0.216 1.216 27 H -0.226 1.226 28 H -0.190 1.190 29 C 0.008 3.992 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.214 0.786 38 H 0.186 0.814 39 H 0.188 0.812 40 H 0.137 0.863 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.061 0.939 45 H 0.089 0.911 46 H 0.048 0.952 47 H 0.080 0.920 48 H 0.051 0.949 49 H 0.047 0.953 50 H 0.203 0.797 51 H 0.057 0.943 52 H 0.081 0.919 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.455 16.193 22.308 29.142 hybrid contribution 0.092 -0.837 -1.940 2.115 sum -9.363 15.356 20.368 27.173 Atomic orbital electron populations 1.22081 0.91562 1.02453 1.04630 1.21973 0.96794 0.94760 0.86959 1.22088 1.00876 0.93226 1.04555 1.44358 1.33493 1.22841 1.07411 1.22543 1.03793 1.03175 0.81573 1.21197 1.03419 0.98711 1.00511 1.22118 1.02733 1.02221 0.89858 1.19820 1.06727 0.98661 0.94371 1.17072 0.78291 0.78301 0.87429 1.90711 1.63990 1.65614 1.28108 1.48488 1.37542 1.35514 1.11699 1.23290 0.91191 1.02228 0.86325 1.22781 0.95499 0.99689 0.92944 0.86015 1.22385 1.01101 0.94428 0.96221 1.22381 1.00358 0.96664 0.95862 1.22255 0.99681 0.94925 0.97224 1.22092 0.92709 0.95212 0.96722 1.20760 0.97404 0.92832 0.84305 1.42582 1.72233 1.20574 1.03253 1.19669 1.29966 0.96216 0.91217 0.90175 1.25589 1.03047 1.01620 0.96897 1.69851 1.52180 1.36757 1.03612 0.85133 0.78118 0.79265 0.77214 1.21606 1.22589 1.19037 1.22150 0.92972 0.92907 0.91164 0.89516 0.93555 0.89541 0.89094 0.93823 0.89390 0.89765 0.78645 0.81365 0.81238 0.86314 0.88990 0.89477 0.89907 0.93913 0.91083 0.95245 0.92022 0.94900 0.95296 0.79690 0.94260 0.91852 0.93787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.11 71.98 0.66 -1.71 16 2 C 0.10 2.08 3.48 44.99 0.16 2.23 16 3 C -0.15 -2.42 9.29 71.98 0.67 -1.75 16 4 N -0.41 -9.11 2.63 -488.67 -1.29 -10.40 16 5 C 0.02 0.39 10.40 83.48 0.87 1.26 16 6 C -0.22 -3.32 10.81 22.01 0.24 -3.08 16 7 C -0.14 -2.80 9.20 22.57 0.21 -2.60 16 8 C -0.08 -2.21 6.83 40.35 0.28 -1.93 16 9 C 0.60 20.18 7.83 86.45 0.68 20.86 16 10 O -0.60 -25.27 14.64 -4.34 -0.06 -25.34 16 11 N -0.60 -18.21 2.53 -813.04 -2.05 -20.26 16 12 C 0.09 1.85 5.03 86.52 0.43 2.29 16 13 C -0.09 -1.95 3.60 -9.29 -0.03 -1.99 16 14 H 0.12 2.12 7.91 -2.39 -0.02 2.10 16 15 C -0.10 -2.05 6.27 31.61 0.20 -1.85 16 16 C -0.12 -3.10 6.51 31.85 0.21 -2.90 16 17 C -0.10 -3.55 5.28 31.62 0.17 -3.39 16 18 C -0.07 -2.13 0.67 -50.68 -0.03 -2.16 16 19 C 0.17 6.71 5.16 86.38 0.45 7.15 16 20 N -0.74 -38.20 5.25 -343.46 -1.80 -40.00 16 21 C -0.24 -13.43 9.99 84.03 0.84 -12.59 16 22 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 23 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 24 N -0.97 -61.83 13.06 21.65 0.28 -61.54 16 25 Si 0.97 47.13 29.55 68.60 2.03 49.15 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 28 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 29 C 0.13 4.79 5.65 86.52 0.49 5.28 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 0.90 8.01 -2.39 -0.02 0.88 16 33 H 0.09 2.76 5.34 -2.39 -0.01 2.75 16 34 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.08 0.94 7.99 -2.39 -0.02 0.92 16 37 H 0.20 1.60 8.06 -2.91 -0.02 1.58 16 38 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 39 H 0.17 2.56 5.06 -2.91 -0.01 2.54 16 40 H 0.12 1.89 4.30 -2.39 -0.01 1.88 16 41 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.09 1.36 7.45 -2.38 -0.02 1.34 16 43 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.04 1.31 7.68 -2.39 -0.02 1.29 16 45 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 46 H 0.03 1.20 7.45 -2.39 -0.02 1.18 16 47 H 0.06 2.22 7.96 -2.39 -0.02 2.20 16 48 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 49 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.37 20.94 7.10 -92.71 -0.66 20.28 16 51 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 52 H 0.06 2.43 7.98 -2.39 -0.02 2.41 16 53 H 0.04 1.96 7.14 -2.39 -0.02 1.94 16 Total: -1.00 -77.31 406.51 4.27 -73.04 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: 0.24 Total: 36.45 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 6.93 Total: -1.09 kcal Atomic # 7 Polarization: -127.35 SS G_CDS: -4.86 Total: -132.21 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.06 Total: -25.34 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.15 kcal Total: -77.31 4.27 -73.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112579515.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.647 kcal (2) G-P(sol) polarization free energy of solvation -77.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds