Wall clock time and date at job start Wed Apr 1 2020 03:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47022 * 2 1 4 4 C 1.52999 * 109.46953 * 119.99872 * 2 1 3 5 5 H 1.09006 * 109.47294 * 306.21133 * 4 2 1 6 6 C 1.50702 * 109.47498 * 66.21049 * 4 2 1 7 7 O 1.21286 * 119.99521 * 110.17154 * 6 4 2 8 8 N 1.34772 * 120.00294 * 290.17318 * 6 4 2 9 9 C 1.46496 * 119.99855 * 176.72853 * 8 6 4 10 10 C 1.53005 * 109.47055 * 180.02562 * 9 8 6 11 11 C 1.52994 * 109.47340 * 184.78834 * 10 9 8 12 12 C 1.52998 * 115.54944 * 277.87075 * 11 10 9 13 13 N 1.46500 * 109.46983 * 294.73126 * 12 11 10 14 14 C 1.36944 * 120.00230 * 183.43719 * 13 12 11 15 15 H 1.08001 * 119.99387 * 0.02562 * 14 13 12 16 16 C 1.38807 * 120.00132 * 180.02562 * 14 13 12 17 17 N 1.31617 * 120.00248 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00070 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47239 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47288 * 119.99939 * 18 16 14 21 21 H 1.48501 * 109.47424 * 240.00013 * 18 16 14 22 22 C 1.52999 * 117.50146 * 132.16036 * 11 10 9 23 23 C 1.52996 * 117.50053 * 63.53633 * 11 10 9 24 24 C 1.50696 * 109.47050 * 186.21631 * 4 2 1 25 25 C 1.38655 * 120.79101 * 299.97179 * 24 4 2 26 26 C 1.38198 * 119.16625 * 180.02562 * 25 24 4 27 27 N 1.31871 * 120.76421 * 359.97438 * 26 25 24 28 28 C 1.31874 * 121.72407 * 0.02562 * 27 26 25 29 29 C 1.38199 * 120.76692 * 0.02562 * 28 27 26 30 30 H 1.09002 * 109.47401 * 299.43571 * 1 2 3 31 31 H 1.08998 * 109.47263 * 59.43516 * 1 2 3 32 32 H 1.09003 * 109.47420 * 179.43552 * 1 2 3 33 33 H 1.08993 * 109.47232 * 239.99599 * 2 1 3 34 34 H 1.08997 * 109.47076 * 179.97438 * 3 2 1 35 35 H 1.09009 * 109.46935 * 299.99963 * 3 2 1 36 36 H 1.08997 * 109.47619 * 59.99279 * 3 2 1 37 37 H 0.97004 * 119.99747 * 356.72975 * 8 6 4 38 38 H 1.08998 * 109.47268 * 300.00077 * 9 8 6 39 39 H 1.08998 * 109.47255 * 60.00183 * 9 8 6 40 40 H 1.09008 * 109.46769 * 304.78745 * 10 9 8 41 41 H 1.08998 * 109.47385 * 64.77864 * 10 9 8 42 42 H 1.08999 * 109.47328 * 54.72892 * 12 11 10 43 43 H 1.08998 * 109.47511 * 174.73299 * 12 11 10 44 44 H 0.97003 * 120.00009 * 3.43474 * 13 12 11 45 45 H 0.97001 * 120.00603 * 180.02562 * 17 16 14 46 46 H 1.08999 * 117.49861 * 0.02562 * 22 11 10 47 47 H 1.08999 * 117.49997 * 145.01924 * 22 11 10 48 48 H 1.09001 * 117.50030 * 214.98287 * 23 11 10 49 49 H 1.08999 * 117.50136 * 0.02562 * 23 11 10 50 50 H 1.07998 * 120.41293 * 0.04131 * 25 24 4 51 51 H 1.08000 * 119.62005 * 180.26231 * 26 25 24 52 52 H 1.08000 * 119.61479 * 179.97438 * 28 27 26 53 53 H 1.08001 * 120.42057 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5887 -0.2756 2.1358 6 6 1.6671 -2.1795 1.1749 7 8 2.5274 -3.0175 1.0058 8 7 0.3777 -2.5524 1.2964 9 6 0.0063 -3.9622 1.1527 10 6 -1.5055 -4.1124 1.3338 11 6 -1.8780 -5.5960 1.3027 12 6 -2.0263 -6.2101 -0.0908 13 7 -3.1611 -5.5902 -0.7793 14 6 -3.5323 -6.0313 -2.0215 15 1 -2.9886 -6.8364 -2.4933 16 6 -4.6072 -5.4436 -2.6741 17 7 -5.2701 -4.4628 -2.0989 18 14 -5.1140 -6.0457 -4.3682 19 1 -4.2153 -7.1499 -4.7904 20 1 -6.5144 -6.5375 -4.3203 21 1 -5.0149 -4.9281 -5.3410 22 6 -2.8017 -6.1158 2.4062 23 6 -1.3178 -6.4885 2.4119 24 6 3.5390 -0.5894 1.3286 25 6 4.3494 -1.0811 0.3166 26 6 5.7202 -0.9425 0.4241 27 7 6.2581 -0.3508 1.4727 28 6 5.5186 0.1286 2.4537 29 6 4.1410 0.0256 2.4158 30 1 -0.3634 0.5050 0.8950 31 1 -0.3634 0.5226 -0.8848 32 1 -0.3634 -1.0276 -0.0101 33 1 1.8933 -0.5139 -0.8899 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 -0.3044 -1.8873 1.4790 38 1 0.2896 -4.3133 0.1604 39 1 0.5237 -4.5531 1.9085 40 1 -1.8010 -3.6836 2.2914 41 1 -2.0216 -3.5911 0.5276 42 1 -1.1151 -6.0364 -0.6632 43 1 -2.1987 -7.2824 0.0011 44 1 -3.6497 -4.8674 -0.3553 45 1 -6.0215 -4.0523 -2.5547 46 1 -3.1443 -5.4007 3.1540 47 1 -3.5153 -6.8953 2.1394 48 1 -1.0552 -7.5132 2.1491 49 1 -0.6841 -6.0186 3.1642 50 1 3.9147 -1.5661 -0.5449 51 1 6.3580 -1.3190 -0.3618 52 1 5.9951 0.6065 3.2968 53 1 3.5407 0.4205 3.2221 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166837114.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:52 Heat of formation + Delta-G solvation = 1.180354 kcal Electronic energy + Delta-G solvation = -30401.807631 eV Core-core repulsion = 26466.156608 eV Total energy + Delta-G solvation = -3935.651023 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.85662 -40.47711 -39.54437 -37.33600 -36.20163 -35.75019 -33.36854 -32.78431 -32.08750 -31.35932 -28.86564 -28.02752 -27.74373 -24.82707 -24.59464 -24.46442 -23.51391 -22.94220 -21.86979 -21.09234 -19.92820 -19.04098 -18.31325 -17.90976 -17.05546 -16.90939 -16.86208 -16.55221 -16.39502 -16.10510 -15.65725 -15.43960 -15.29048 -15.08572 -14.82536 -14.50999 -14.47050 -14.22134 -14.18922 -13.91397 -13.73995 -13.25997 -13.17432 -13.03927 -12.92769 -12.82579 -12.59584 -12.54810 -12.28804 -12.16667 -12.07646 -11.96392 -11.92912 -11.81337 -11.70128 -11.14100 -10.97825 -10.89770 -10.60283 -10.42299 -10.38100 -10.06062 -10.00848 -8.97342 -7.95373 -5.22563 0.25042 0.29508 1.46002 1.46363 1.55639 1.56181 2.14872 2.53554 2.88416 2.92907 3.36451 3.37828 3.57351 3.62648 3.78892 3.83975 3.84645 3.95036 3.98844 4.05991 4.08234 4.22258 4.24886 4.25972 4.32720 4.42018 4.43804 4.48709 4.62053 4.65493 4.73479 4.79581 4.83282 4.90647 4.92042 4.94115 4.97152 4.98406 5.06424 5.07737 5.18808 5.20629 5.26772 5.32370 5.33272 5.36273 5.37990 5.42630 5.44537 5.48869 5.80987 6.27477 6.50370 7.05824 7.19604 7.34772 8.10540 8.36861 9.27955 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012461 B = 0.002379 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.426789 B =11765.227622 C =12792.615547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.077 4.077 3 C -0.139 4.139 4 C -0.058 4.058 5 H 0.138 0.862 6 C 0.515 3.485 7 O -0.575 6.575 8 N -0.715 5.715 9 C 0.133 3.867 10 C -0.077 4.077 11 C -0.138 4.138 12 C 0.188 3.812 13 N -0.735 5.735 14 C -0.244 4.244 15 H 0.069 0.931 16 C -0.071 4.071 17 N -0.964 5.964 18 Si 0.968 3.032 19 H -0.271 1.271 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.163 4.163 23 C -0.152 4.152 24 C -0.027 4.027 25 C -0.148 4.148 26 C 0.080 3.920 27 N -0.512 5.512 28 C 0.085 3.915 29 C -0.162 4.162 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.415 0.585 38 H 0.041 0.959 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.012 0.988 43 H 0.015 0.985 44 H 0.377 0.623 45 H 0.251 0.749 46 H 0.109 0.891 47 H 0.078 0.922 48 H 0.094 0.906 49 H 0.114 0.886 50 H 0.120 0.880 51 H 0.164 0.836 52 H 0.181 0.819 53 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.746 13.369 13.717 24.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.096 4.096 3 C -0.196 4.196 4 C -0.079 4.079 5 H 0.156 0.844 6 C 0.302 3.698 7 O -0.454 6.454 8 N -0.369 5.369 9 C 0.009 3.991 10 C -0.115 4.115 11 C -0.139 4.139 12 C 0.061 3.939 13 N -0.377 5.377 14 C -0.376 4.376 15 H 0.087 0.913 16 C -0.263 4.263 17 N -0.615 5.615 18 Si 0.797 3.203 19 H -0.196 1.196 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.200 4.200 23 C -0.189 4.189 24 C -0.036 4.036 25 C -0.168 4.168 26 C -0.075 4.075 27 N -0.222 5.222 28 C -0.072 4.072 29 C -0.181 4.181 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.254 0.746 38 H 0.059 0.941 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.078 0.922 42 H 0.030 0.970 43 H 0.033 0.967 44 H 0.210 0.790 45 H 0.060 0.940 46 H 0.128 0.872 47 H 0.097 0.903 48 H 0.112 0.888 49 H 0.132 0.868 50 H 0.138 0.862 51 H 0.181 0.819 52 H 0.198 0.802 53 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 17.272 12.715 13.475 25.329 hybrid contribution -1.886 -0.353 -1.366 2.355 sum 15.386 12.362 12.109 23.156 Atomic orbital electron populations 1.22175 0.93564 1.02560 1.04049 1.20998 0.96719 0.97033 0.94826 1.21793 1.00560 0.93942 1.03305 1.20506 0.92434 0.91667 1.03275 0.84443 1.20841 0.82186 0.91375 0.75395 1.90719 1.49832 1.54616 1.50282 1.46235 1.08584 1.09950 1.72089 1.21158 0.95228 0.81897 1.00831 1.21105 0.93643 0.93695 1.03030 1.21402 1.06821 0.94922 0.90736 1.20225 0.89325 0.94295 0.90028 1.42428 1.35106 1.42436 1.17761 1.19612 1.10121 1.13536 0.94333 0.91335 1.25460 0.99109 0.99456 1.02318 1.69796 1.23636 1.28401 1.39640 0.85155 0.77560 0.77432 0.80115 1.19557 1.21907 1.21925 1.23002 0.93291 1.03422 1.00250 1.23051 0.96189 0.99979 0.99714 1.19849 0.94469 0.95141 0.94095 1.21967 0.95077 0.99543 1.00211 1.22921 0.93075 0.95507 0.96043 1.67670 1.41911 1.10209 1.02373 1.23212 0.91169 0.95946 0.96862 1.22327 0.96570 1.00471 0.98755 0.89557 0.91755 0.92782 0.92483 0.93413 0.91845 0.90469 0.74588 0.94083 0.91241 0.89039 0.92181 0.97030 0.96660 0.79002 0.93975 0.87249 0.90346 0.88784 0.86811 0.86185 0.81922 0.80217 0.81676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 8.32 71.98 0.60 -1.80 16 2 C -0.08 -1.18 2.25 -10.80 -0.02 -1.20 16 3 C -0.14 -1.70 8.85 71.98 0.64 -1.07 16 4 C -0.06 -0.93 2.04 -12.29 -0.03 -0.95 16 5 H 0.14 1.31 7.95 -2.38 -0.02 1.29 16 6 C 0.52 12.10 6.88 87.66 0.60 12.71 16 7 O -0.58 -18.58 14.85 -3.05 -0.05 -18.63 16 8 N -0.71 -15.07 4.37 -463.06 -2.02 -17.09 16 9 C 0.13 3.44 5.61 86.38 0.48 3.93 16 10 C -0.08 -2.03 5.22 30.59 0.16 -1.87 16 11 C -0.14 -4.16 1.55 -52.19 -0.08 -4.24 16 12 C 0.19 7.59 6.10 86.38 0.53 8.11 16 13 N -0.73 -36.84 5.38 -343.46 -1.85 -38.68 16 14 C -0.24 -13.68 9.99 84.03 0.84 -12.84 16 15 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 16 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 17 N -0.96 -57.82 13.06 21.65 0.28 -57.53 16 18 Si 0.97 46.15 29.55 68.60 2.03 48.18 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 20 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 21 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 22 C -0.16 -4.41 9.90 30.59 0.30 -4.11 16 23 C -0.15 -3.64 9.40 30.59 0.29 -3.36 16 24 C -0.03 -0.50 2.98 -19.67 -0.06 -0.56 16 25 C -0.15 -3.30 7.97 22.36 0.18 -3.12 16 26 C 0.08 1.75 11.18 84.68 0.95 2.70 16 27 N -0.51 -11.38 10.36 -195.85 -2.03 -13.41 16 28 C 0.08 1.42 11.18 84.68 0.95 2.37 16 29 C -0.16 -2.39 9.76 22.36 0.22 -2.17 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 0.97 5.31 -2.39 -0.01 0.96 16 33 H 0.06 1.13 7.71 -2.39 -0.02 1.11 16 34 H 0.05 0.69 6.98 -2.39 -0.02 0.67 16 35 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.41 6.53 6.33 -92.71 -0.59 5.94 16 38 H 0.04 1.32 8.03 -2.39 -0.02 1.30 16 39 H 0.07 1.78 7.38 -2.39 -0.02 1.76 16 40 H 0.09 1.89 7.93 -2.38 -0.02 1.87 16 41 H 0.06 1.92 7.45 -2.39 -0.02 1.90 16 42 H 0.01 0.50 8.03 -2.39 -0.02 0.48 16 43 H 0.02 0.64 8.09 -2.39 -0.02 0.62 16 44 H 0.38 19.77 7.17 -92.71 -0.66 19.11 16 45 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 46 H 0.11 2.51 8.07 -2.39 -0.02 2.49 16 47 H 0.08 2.41 8.14 -2.39 -0.02 2.40 16 48 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.11 2.22 7.82 -2.39 -0.02 2.20 16 50 H 0.12 2.89 7.51 -2.91 -0.02 2.87 16 51 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 52 H 0.18 1.85 8.06 -2.91 -0.02 1.82 16 53 H 0.17 1.26 8.01 -2.91 -0.02 1.24 16 Total: -1.00 -73.28 424.45 3.02 -70.26 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: -0.35 Total: 37.96 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: 7.01 Total: -11.05 kcal Atomic # 7 Polarization: -121.10 SS G_CDS: -5.62 Total: -126.72 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.05 Total: -18.63 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -73.28 3.02 -70.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166837114.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.438 kcal (2) G-P(sol) polarization free energy of solvation -73.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds