Wall clock time and date at job start Wed Apr 1 2020 03:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46780 * 2 1 4 4 C 1.52996 * 109.47058 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47594 * 305.00406 * 4 3 2 6 6 C 1.50699 * 109.47089 * 184.99961 * 4 3 2 7 7 O 1.21278 * 120.00328 * 240.00514 * 6 4 3 8 8 N 1.34774 * 119.99516 * 60.00769 * 6 4 3 9 9 C 1.46503 * 119.99729 * 180.02562 * 8 6 4 10 10 C 1.53004 * 109.47173 * 179.97438 * 9 8 6 11 11 C 1.53003 * 109.47059 * 175.45295 * 10 9 8 12 12 C 1.52999 * 115.54938 * 279.32517 * 11 10 9 13 13 N 1.46501 * 109.47312 * 294.95157 * 12 11 10 14 14 C 1.36937 * 120.00103 * 174.37307 * 13 12 11 15 15 H 1.08007 * 119.99702 * 0.02562 * 14 13 12 16 16 C 1.38813 * 119.99874 * 179.97438 * 14 13 12 17 17 N 1.31614 * 119.99994 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99536 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47191 * 90.00102 * 18 16 14 20 20 H 1.48503 * 109.46805 * 210.00111 * 18 16 14 21 21 H 1.48496 * 109.47409 * 329.99944 * 18 16 14 22 22 C 1.52998 * 117.49478 * 133.61949 * 11 10 9 23 23 C 1.53001 * 117.49904 * 64.99661 * 11 10 9 24 24 C 1.50704 * 109.46839 * 65.00549 * 4 3 2 25 25 C 1.38223 * 119.61855 * 84.72812 * 24 4 3 26 26 C 1.38629 * 119.15895 * 179.75605 * 25 24 4 27 27 C 1.38674 * 118.42208 * 0.50128 * 26 25 24 28 28 C 1.38176 * 119.16001 * 359.73993 * 27 26 25 29 29 N 1.31855 * 119.61590 * 264.99733 * 24 4 3 30 30 H 1.09007 * 109.46644 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47214 * 299.99099 * 1 2 3 32 32 H 1.08996 * 109.47431 * 60.00231 * 1 2 3 33 33 H 1.08998 * 109.47214 * 240.00901 * 2 1 3 34 34 H 1.08997 * 109.47659 * 120.00269 * 2 1 3 35 35 H 1.08998 * 109.46512 * 60.00470 * 3 2 1 36 36 H 1.08997 * 109.47244 * 300.00523 * 3 2 1 37 37 H 0.96994 * 120.00591 * 359.97438 * 8 6 4 38 38 H 1.09001 * 109.47140 * 299.99174 * 9 8 6 39 39 H 1.08995 * 109.47715 * 59.99373 * 9 8 6 40 40 H 1.08996 * 109.47140 * 295.45611 * 10 9 8 41 41 H 1.09001 * 109.46798 * 55.45628 * 10 9 8 42 42 H 1.09003 * 109.47088 * 54.95311 * 12 11 10 43 43 H 1.09003 * 109.46799 * 174.95253 * 12 11 10 44 44 H 0.96998 * 120.00005 * 354.37309 * 13 12 11 45 45 H 0.97002 * 119.99796 * 180.02562 * 17 16 14 46 46 H 1.08993 * 117.50192 * 359.97438 * 22 11 10 47 47 H 1.08998 * 117.49505 * 145.01893 * 22 11 10 48 48 H 1.08994 * 117.49711 * 214.97712 * 23 11 10 49 49 H 1.09000 * 117.49561 * 0.02562 * 23 11 10 50 50 H 1.08000 * 120.42299 * 359.97438 * 25 24 4 51 51 H 1.08004 * 120.79027 * 180.25876 * 26 25 24 52 52 H 1.08003 * 120.42018 * 179.70884 * 27 26 25 53 53 H 1.08007 * 119.61363 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 1 3.9330 0.8534 0.8426 6 6 4.0721 2.8581 0.1245 7 8 4.7696 3.3326 -0.7469 8 7 3.7461 3.5968 1.2036 9 6 4.2338 4.9730 1.3238 10 6 3.7229 5.5829 2.6307 11 6 4.3235 6.9785 2.8113 12 6 5.7505 7.0165 3.3619 13 7 5.7607 6.4899 4.7290 14 6 6.9488 6.3179 5.3876 15 1 7.8784 6.5709 4.8994 16 6 6.9584 5.8193 6.6831 17 7 5.8255 5.5115 7.2781 18 14 8.5793 5.5841 7.5813 19 1 8.9197 6.8255 8.3217 20 1 8.4556 4.4551 8.5381 21 1 9.6511 5.2845 6.5981 22 6 3.3764 8.1071 3.2234 23 6 3.9286 8.0541 1.7974 24 6 4.0728 0.8422 -1.2869 25 6 4.1968 1.6388 -2.4096 26 6 4.6651 1.0777 -3.5876 27 6 4.9827 -0.2722 -3.5951 28 6 4.8280 -1.0067 -2.4350 29 7 4.3843 -0.4383 -1.3307 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6765 1.9565 -0.8899 37 1 3.1880 3.2175 1.9004 38 1 5.3238 4.9735 1.3240 39 1 3.8704 5.5621 0.4818 40 1 2.6360 5.6567 2.5967 41 1 4.0182 4.9493 3.4671 42 1 6.3991 6.4069 2.7328 43 1 6.1109 8.0452 3.3662 44 1 4.9258 6.2630 5.1675 45 1 5.8322 5.1635 8.1836 46 1 2.3254 7.8556 3.3654 47 1 3.7698 8.8771 3.8871 48 1 4.6852 8.7891 1.5231 49 1 3.2405 7.7676 1.0021 50 1 3.9355 2.6859 -2.3688 51 1 4.7763 1.6767 -4.4794 52 1 5.3458 -0.7436 -4.4964 53 1 5.0728 -2.0587 -2.4327 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166842525.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:59 Heat of formation + Delta-G solvation = -1.128418 kcal Electronic energy + Delta-G solvation = -30016.671280 eV Core-core repulsion = 26080.920141 eV Total energy + Delta-G solvation = -3935.751139 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.82997 -40.37771 -39.49717 -36.76989 -36.15954 -35.73353 -33.40403 -33.02220 -32.77991 -31.45837 -29.78054 -27.80722 -26.11546 -24.81804 -24.60378 -24.42480 -23.39726 -22.78639 -22.08391 -21.27844 -19.93782 -19.01749 -18.14890 -17.97601 -17.21337 -17.01008 -16.70473 -16.55122 -16.33374 -16.17142 -15.77573 -15.58672 -15.28547 -15.01290 -14.87009 -14.58702 -14.37127 -14.15084 -13.99394 -13.82476 -13.78987 -13.36503 -13.16691 -13.05453 -12.97942 -12.80146 -12.54332 -12.39778 -12.26416 -12.17248 -12.05479 -12.01816 -11.92486 -11.80901 -11.54286 -11.08828 -10.94058 -10.87706 -10.62090 -10.49667 -10.36851 -10.07572 -9.83485 -8.97392 -7.95204 -5.22422 0.20484 0.41621 1.45913 1.46816 1.52707 1.55289 2.06202 2.53783 2.89232 2.91943 3.24755 3.37738 3.49174 3.84783 3.85733 3.91203 3.95468 3.99506 4.05283 4.09247 4.11612 4.22452 4.27533 4.28434 4.32391 4.43543 4.47345 4.50868 4.65645 4.67644 4.70396 4.80366 4.85260 4.91239 4.92852 4.95678 4.99055 5.02114 5.09460 5.19335 5.25627 5.25839 5.28872 5.33407 5.34641 5.35528 5.40002 5.45856 5.48254 5.48706 5.83702 6.27505 6.48717 7.04763 7.17074 7.34762 8.11002 8.37045 9.27966 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010154 B = 0.002341 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.750013 B =11960.305047 C =12566.297209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.097 4.097 4 C -0.054 4.054 5 H 0.116 0.884 6 C 0.518 3.482 7 O -0.568 6.568 8 N -0.712 5.712 9 C 0.135 3.865 10 C -0.077 4.077 11 C -0.139 4.139 12 C 0.187 3.813 13 N -0.735 5.735 14 C -0.246 4.246 15 H 0.068 0.932 16 C -0.071 4.071 17 N -0.964 5.964 18 Si 0.968 3.032 19 H -0.287 1.287 20 H -0.293 1.293 21 H -0.274 1.274 22 C -0.164 4.164 23 C -0.150 4.150 24 C 0.120 3.880 25 C -0.150 4.150 26 C -0.093 4.093 27 C -0.169 4.169 28 C 0.078 3.922 29 N -0.497 5.497 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.414 0.586 38 H 0.040 0.960 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.058 0.942 42 H 0.016 0.984 43 H 0.011 0.989 44 H 0.377 0.623 45 H 0.251 0.749 46 H 0.109 0.891 47 H 0.078 0.922 48 H 0.094 0.906 49 H 0.116 0.884 50 H 0.137 0.863 51 H 0.152 0.848 52 H 0.163 0.837 53 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.577 -9.887 -22.257 27.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.135 4.135 4 C -0.076 4.076 5 H 0.134 0.866 6 C 0.304 3.696 7 O -0.448 6.448 8 N -0.364 5.364 9 C 0.011 3.989 10 C -0.115 4.115 11 C -0.140 4.140 12 C 0.061 3.939 13 N -0.377 5.377 14 C -0.378 4.378 15 H 0.086 0.914 16 C -0.263 4.263 17 N -0.615 5.615 18 Si 0.797 3.203 19 H -0.214 1.214 20 H -0.219 1.219 21 H -0.199 1.199 22 C -0.201 4.201 23 C -0.187 4.187 24 C -0.017 4.017 25 C -0.169 4.169 26 C -0.119 4.119 27 C -0.188 4.188 28 C -0.079 4.079 29 N -0.207 5.207 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.250 0.750 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.029 0.971 44 H 0.210 0.790 45 H 0.060 0.940 46 H 0.128 0.872 47 H 0.097 0.903 48 H 0.112 0.888 49 H 0.134 0.866 50 H 0.155 0.845 51 H 0.170 0.830 52 H 0.181 0.819 53 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -11.981 -10.034 -22.099 27.067 hybrid contribution 0.956 0.258 0.643 1.180 sum -11.025 -9.777 -21.456 26.029 Atomic orbital electron populations 1.21755 0.94685 1.02061 1.02198 1.21442 0.96395 0.95296 1.02210 1.21585 0.89144 0.98921 1.03878 1.20155 0.98881 0.91765 0.96757 0.86620 1.20614 0.79593 0.87950 0.81400 1.90659 1.39353 1.73782 1.41036 1.45909 1.53152 1.14415 1.22900 1.21184 0.98219 0.81357 0.98110 1.21107 1.00639 0.93714 0.96046 1.21401 0.95275 0.91678 1.05650 1.20234 0.93349 0.95221 0.85093 1.42419 1.05436 1.77557 1.12303 1.19581 0.87391 1.34590 0.96196 0.91376 1.25465 0.99921 1.02734 0.98197 1.69794 1.26047 1.51726 1.13935 0.85221 0.79711 0.77018 0.78309 1.21378 1.21938 1.19940 1.23009 0.99027 0.99976 0.98121 1.23058 1.03210 0.99933 0.92520 1.20582 0.96780 0.89927 0.94413 1.22362 0.99644 1.01504 0.93428 1.21964 0.95686 0.95810 0.98414 1.22471 1.00806 0.94748 1.00813 1.23177 0.95266 1.01463 0.88028 1.67379 1.11536 1.11634 1.30114 0.92395 0.91803 0.92794 0.93100 0.91532 0.88848 0.91336 0.74967 0.94135 0.90555 0.88951 0.92363 0.96631 0.97085 0.79042 0.93967 0.87240 0.90322 0.88751 0.86564 0.84513 0.83012 0.81892 0.80430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 71.98 0.71 -1.18 16 2 C -0.12 -1.80 5.71 30.60 0.17 -1.63 16 3 C -0.10 -1.53 4.62 30.60 0.14 -1.39 16 4 C -0.05 -1.14 2.52 -12.29 -0.03 -1.17 16 5 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 6 C 0.52 13.29 6.93 87.66 0.61 13.90 16 7 O -0.57 -18.41 13.13 -3.02 -0.04 -18.45 16 8 N -0.71 -16.31 5.42 -463.06 -2.51 -18.81 16 9 C 0.13 3.55 5.51 86.38 0.48 4.02 16 10 C -0.08 -2.08 5.24 30.60 0.16 -1.92 16 11 C -0.14 -4.22 1.52 -52.18 -0.08 -4.30 16 12 C 0.19 7.65 6.10 86.38 0.53 8.18 16 13 N -0.73 -37.31 5.30 -343.44 -1.82 -39.13 16 14 C -0.25 -13.94 9.99 84.03 0.84 -13.10 16 15 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 16 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 17 N -0.96 -58.59 13.06 21.65 0.28 -58.31 16 18 Si 0.97 46.73 29.55 68.60 2.03 48.76 16 19 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 20 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 21 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 22 C -0.16 -4.43 9.90 30.59 0.30 -4.13 16 23 C -0.15 -3.53 9.57 30.60 0.29 -3.24 16 24 C 0.12 2.90 4.88 42.55 0.21 3.11 16 25 C -0.15 -3.55 8.27 22.36 0.18 -3.36 16 26 C -0.09 -1.74 10.18 22.47 0.23 -1.51 16 27 C -0.17 -2.66 10.11 22.36 0.23 -2.43 16 28 C 0.08 1.42 11.18 84.67 0.95 2.37 16 29 N -0.50 -11.70 9.61 -183.88 -1.77 -13.46 16 30 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 0.95 6.89 -2.39 -0.02 0.93 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.14 7.43 -2.39 -0.02 1.12 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.41 7.43 7.83 -92.71 -0.73 6.71 16 38 H 0.04 1.33 7.69 -2.39 -0.02 1.32 16 39 H 0.08 1.85 7.80 -2.39 -0.02 1.83 16 40 H 0.09 1.95 7.94 -2.39 -0.02 1.93 16 41 H 0.06 1.93 7.64 -2.39 -0.02 1.91 16 42 H 0.02 0.67 7.69 -2.39 -0.02 0.65 16 43 H 0.01 0.47 8.09 -2.39 -0.02 0.45 16 44 H 0.38 20.07 7.46 -92.71 -0.69 19.38 16 45 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 46 H 0.11 2.50 8.08 -2.39 -0.02 2.48 16 47 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 48 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.12 2.17 7.98 -2.39 -0.02 2.15 16 50 H 0.14 3.51 5.97 -2.91 -0.02 3.49 16 51 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 52 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 53 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -72.28 428.94 2.04 -70.24 By element: Atomic # 1 Polarization: 41.07 SS G_CDS: -0.52 Total: 40.56 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 6.39 Total: -11.38 kcal Atomic # 7 Polarization: -123.91 SS G_CDS: -5.81 Total: -129.72 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.04 Total: -18.45 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -72.28 2.04 -70.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166842525.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.112 kcal (2) G-P(sol) polarization free energy of solvation -72.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds