Wall clock time and date at job start Wed Apr 1 2020 03:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47660 * 2 1 4 4 C 1.52994 * 109.47557 * 174.47765 * 3 2 1 5 5 H 1.09009 * 109.46844 * 305.77313 * 4 3 2 6 6 C 1.50701 * 109.47628 * 65.77488 * 4 3 2 7 7 O 1.21280 * 119.99614 * 110.65632 * 6 4 3 8 8 N 1.34774 * 119.99778 * 290.66482 * 6 4 3 9 9 C 1.46499 * 119.99895 * 184.99980 * 8 6 4 10 10 C 1.53002 * 109.47274 * 175.00904 * 9 8 6 11 11 C 1.52997 * 109.47169 * 184.41263 * 10 9 8 12 12 C 1.53005 * 115.54967 * 39.90193 * 11 10 9 13 13 N 1.46507 * 109.47075 * 64.75691 * 12 11 10 14 14 C 1.36935 * 120.00298 * 185.01599 * 13 12 11 15 15 H 1.08000 * 119.99941 * 4.99439 * 14 13 12 16 16 C 1.38806 * 120.00110 * 184.98819 * 14 13 12 17 17 N 1.31615 * 119.99925 * 184.85110 * 16 14 13 18 18 Si 1.86802 * 120.00080 * 4.85654 * 16 14 13 19 19 H 1.48506 * 109.47260 * 94.62388 * 18 16 14 20 20 H 1.48494 * 109.47309 * 214.62427 * 18 16 14 21 21 H 1.48497 * 109.47029 * 334.62734 * 18 16 14 22 22 C 1.52999 * 117.50014 * 254.20039 * 11 10 9 23 23 C 1.52992 * 117.50168 * 185.57524 * 11 10 9 24 24 C 1.50704 * 109.47503 * 185.77947 * 4 3 2 25 25 C 1.38224 * 119.61677 * 274.99981 * 24 4 3 26 26 C 1.38633 * 119.16277 * 180.02562 * 25 24 4 27 27 C 1.38673 * 118.41813 * 0.02562 * 26 25 24 28 28 C 1.38185 * 119.16234 * 0.27409 * 27 26 25 29 29 N 1.31860 * 119.61953 * 95.01642 * 24 4 3 30 30 H 1.09002 * 109.47335 * 59.99467 * 1 2 3 31 31 H 1.08998 * 109.47270 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46660 * 300.00115 * 1 2 3 33 33 H 1.09010 * 109.46639 * 240.00265 * 2 1 3 34 34 H 1.09002 * 109.47335 * 120.00533 * 2 1 3 35 35 H 1.09001 * 109.47260 * 54.47109 * 3 2 1 36 36 H 1.09005 * 109.47192 * 294.47520 * 3 2 1 37 37 H 0.96999 * 120.00021 * 4.99837 * 8 6 4 38 38 H 1.09003 * 109.46885 * 295.00537 * 9 8 6 39 39 H 1.09002 * 109.47171 * 55.00145 * 9 8 6 40 40 H 1.08996 * 109.46451 * 304.41122 * 10 9 8 41 41 H 1.08999 * 109.47030 * 64.40999 * 10 9 8 42 42 H 1.09002 * 109.47265 * 184.75178 * 12 11 10 43 43 H 1.08996 * 109.47540 * 304.75676 * 12 11 10 44 44 H 0.97001 * 119.99613 * 5.02355 * 13 12 11 45 45 H 0.97010 * 119.99947 * 180.02562 * 17 16 14 46 46 H 1.09001 * 117.49736 * 359.97438 * 22 11 10 47 47 H 1.08997 * 117.49938 * 145.02177 * 22 11 10 48 48 H 1.09004 * 117.50077 * 214.98180 * 23 11 10 49 49 H 1.09008 * 117.49586 * 359.97438 * 23 11 10 50 50 H 1.08006 * 120.41957 * 359.97438 * 25 24 4 51 51 H 1.07996 * 120.78827 * 180.02562 * 26 25 24 52 52 H 1.07999 * 120.41769 * 180.02562 * 27 26 25 53 53 H 1.07999 * 119.61266 * 179.70730 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5637 1.4446 0.1388 5 1 3.8490 0.8714 1.0210 6 6 4.1808 0.8211 -1.0866 7 8 4.8047 1.5079 -1.8675 8 7 4.0391 -0.4997 -1.3145 9 6 4.7292 -1.1260 -2.4449 10 6 4.5033 -2.6388 -2.4056 11 6 5.3127 -3.3044 -3.5203 12 6 6.7129 -2.7321 -3.7511 13 7 7.5402 -2.9728 -2.5662 14 6 8.8071 -2.4573 -2.4994 15 1 9.1674 -1.8069 -3.2828 16 6 9.6281 -2.7705 -1.4249 17 7 10.8091 -2.2007 -1.3112 18 14 9.0569 -4.0006 -0.1404 19 1 9.5740 -5.3500 -0.4828 20 1 9.5700 -3.5977 1.1935 21 1 7.5726 -4.0323 -0.1110 22 6 4.5463 -3.8123 -4.7432 23 6 5.1201 -4.8073 -3.7324 24 6 4.0532 2.8628 0.2814 25 6 4.2847 3.6226 -0.8498 26 6 4.7353 4.9259 -0.7077 27 6 4.9377 5.4182 0.5728 28 6 4.6907 4.5974 1.6567 29 7 4.2560 3.3644 1.4839 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8932 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.5982 1.9841 0.8363 36 1 1.7598 1.9269 -0.9354 37 1 3.4803 -1.0355 -0.7302 38 1 4.3358 -0.7241 -3.3786 39 1 5.7969 -0.9162 -2.3802 40 1 4.8251 -3.0291 -1.4401 41 1 3.4440 -2.8518 -2.5489 42 1 7.1660 -3.2178 -4.6153 43 1 6.6417 -1.6598 -3.9328 44 1 7.1906 -3.4975 -1.8290 45 1 11.3831 -2.4199 -0.5604 46 1 3.4654 -3.6725 -4.7534 47 1 5.0395 -3.7387 -5.7124 48 1 5.9907 -5.3883 -4.0367 49 1 4.4169 -5.3219 -3.0775 50 1 4.1174 3.2059 -1.8321 51 1 4.9243 5.5430 -1.5736 52 1 5.2878 6.4291 0.7209 53 1 4.8505 4.9719 2.6570 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166842526.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:04 Heat of formation + Delta-G solvation = 11.216867 kcal Electronic energy + Delta-G solvation = -30771.441719 eV Core-core repulsion = 26836.225912 eV Total energy + Delta-G solvation = -3935.215807 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.88662 -40.44736 -39.57873 -36.83015 -36.11132 -35.90073 -33.57359 -33.24384 -33.00173 -31.46727 -29.85413 -28.04704 -26.09241 -24.88198 -24.44207 -24.27560 -23.20016 -23.01746 -22.12720 -21.47030 -20.38892 -19.20725 -18.34118 -17.80716 -17.34622 -16.84395 -16.73811 -16.58591 -16.39774 -16.29981 -15.72717 -15.64468 -15.25586 -15.02621 -14.75466 -14.60271 -14.57075 -14.30810 -14.12549 -13.98419 -13.86161 -13.44987 -13.21528 -13.11106 -13.04090 -12.88415 -12.60005 -12.53146 -12.22701 -12.18729 -12.04379 -11.91566 -11.84062 -11.80068 -11.58800 -11.10733 -10.99003 -10.86959 -10.61518 -10.54944 -10.38745 -10.06010 -9.85280 -9.28288 -8.04796 -5.37212 0.16131 0.37940 1.32048 1.38769 1.45554 1.52182 2.06005 2.46059 2.84538 2.86862 3.19942 3.26047 3.51802 3.71356 3.76754 3.86239 3.92453 3.94740 4.02151 4.06095 4.11090 4.13460 4.17625 4.27441 4.28623 4.41423 4.45230 4.47469 4.63751 4.65118 4.70197 4.81391 4.86857 4.89742 4.91904 4.95350 5.01504 5.02328 5.10256 5.14462 5.23040 5.24010 5.25481 5.29191 5.32674 5.33077 5.37125 5.44563 5.48358 5.73703 5.81257 6.19526 6.47959 6.99821 7.07490 7.19525 7.83713 8.05965 9.17422 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008382 B = 0.003379 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3339.675519 B = 8283.813493 C =10125.857196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C -0.091 4.091 4 C -0.052 4.052 5 H 0.117 0.883 6 C 0.515 3.485 7 O -0.569 6.569 8 N -0.711 5.711 9 C 0.121 3.879 10 C -0.075 4.075 11 C -0.148 4.148 12 C 0.188 3.812 13 N -0.747 5.747 14 C -0.233 4.233 15 H 0.047 0.953 16 C -0.065 4.065 17 N -0.986 5.986 18 Si 0.960 3.040 19 H -0.279 1.279 20 H -0.298 1.298 21 H -0.245 1.245 22 C -0.146 4.146 23 C -0.166 4.166 24 C 0.111 3.889 25 C -0.156 4.156 26 C -0.096 4.096 27 C -0.169 4.169 28 C 0.077 3.923 29 N -0.502 5.502 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.415 0.585 38 H 0.065 0.935 39 H 0.042 0.958 40 H 0.065 0.935 41 H 0.105 0.895 42 H 0.016 0.984 43 H 0.021 0.979 44 H 0.369 0.631 45 H 0.257 0.743 46 H 0.122 0.878 47 H 0.092 0.908 48 H 0.081 0.919 49 H 0.115 0.885 50 H 0.146 0.854 51 H 0.152 0.848 52 H 0.165 0.835 53 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.063 6.068 3.072 27.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C -0.130 4.130 4 C -0.074 4.074 5 H 0.135 0.865 6 C 0.302 3.698 7 O -0.449 6.449 8 N -0.365 5.365 9 C -0.002 4.002 10 C -0.112 4.112 11 C -0.149 4.149 12 C 0.062 3.938 13 N -0.393 5.393 14 C -0.365 4.365 15 H 0.065 0.935 16 C -0.256 4.256 17 N -0.637 5.637 18 Si 0.787 3.213 19 H -0.205 1.205 20 H -0.225 1.225 21 H -0.170 1.170 22 C -0.183 4.183 23 C -0.203 4.203 24 C -0.027 4.027 25 C -0.176 4.176 26 C -0.122 4.122 27 C -0.188 4.188 28 C -0.080 4.080 29 N -0.211 5.211 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.255 0.745 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.123 0.877 42 H 0.033 0.967 43 H 0.039 0.961 44 H 0.203 0.797 45 H 0.066 0.934 46 H 0.140 0.860 47 H 0.110 0.890 48 H 0.100 0.900 49 H 0.133 0.867 50 H 0.164 0.836 51 H 0.169 0.831 52 H 0.183 0.817 53 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -26.605 6.113 3.158 27.480 hybrid contribution 1.035 0.016 0.141 1.045 sum -25.569 6.129 3.299 26.500 Atomic orbital electron populations 1.21710 0.94196 1.02558 1.02019 1.21863 0.97570 0.95009 1.03180 1.21502 0.88828 0.99347 1.03296 1.20158 0.98474 0.91901 0.96879 0.86485 1.20716 0.79436 0.82600 0.87060 1.90631 1.43241 1.61532 1.49486 1.46189 1.50190 1.08283 1.31876 1.21338 0.96521 0.93512 0.88853 1.21150 1.00613 0.91761 0.97689 1.21459 0.95380 0.97731 1.00310 1.20272 0.88239 0.96889 0.88437 1.42616 1.13111 1.64528 1.19087 1.19002 0.90211 1.21671 1.05567 0.93524 1.25555 0.96270 1.02608 1.01210 1.69917 1.12025 1.48371 1.33375 0.85329 0.79092 0.78994 0.77913 1.20495 1.22453 1.16985 1.23143 1.00497 1.01561 0.93138 1.23044 1.03200 0.90762 1.03301 1.20712 0.97452 0.95532 0.88987 1.22688 0.98917 0.94648 1.01328 1.22020 0.95900 0.95162 0.99073 1.22506 1.00666 1.02729 0.92900 1.23205 0.95000 0.88833 1.00939 1.67347 1.12966 1.15387 1.25428 0.92825 0.91453 0.92360 0.90999 0.90173 0.89852 0.91618 0.74505 0.91620 0.93933 0.91608 0.87692 0.96651 0.96128 0.79721 0.93410 0.85973 0.88971 0.90020 0.86722 0.83630 0.83074 0.81710 0.80107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 71.98 0.71 -0.78 16 2 C -0.14 -1.69 4.76 30.59 0.15 -1.54 16 3 C -0.09 -1.54 4.65 30.59 0.14 -1.40 16 4 C -0.05 -1.24 2.57 -12.29 -0.03 -1.27 16 5 H 0.12 2.66 8.14 -2.38 -0.02 2.64 16 6 C 0.52 14.98 6.85 87.66 0.60 15.58 16 7 O -0.57 -21.34 12.82 -3.03 -0.04 -21.38 16 8 N -0.71 -17.30 4.65 -463.06 -2.16 -19.45 16 9 C 0.12 3.49 5.01 86.38 0.43 3.92 16 10 C -0.07 -1.72 5.35 30.59 0.16 -1.56 16 11 C -0.15 -3.99 1.84 -52.18 -0.10 -4.09 16 12 C 0.19 7.32 5.28 86.38 0.46 7.78 16 13 N -0.75 -35.60 5.24 -343.43 -1.80 -37.40 16 14 C -0.23 -13.93 10.47 84.03 0.88 -13.05 16 15 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 16 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 17 N -0.99 -65.74 13.97 21.65 0.30 -65.44 16 18 Si 0.96 46.62 28.01 68.60 1.92 48.54 16 19 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 20 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 21 H -0.25 -10.42 6.14 99.48 0.61 -9.81 16 22 C -0.15 -2.94 9.87 30.59 0.30 -2.64 16 23 C -0.17 -3.79 9.97 30.59 0.31 -3.49 16 24 C 0.11 3.10 5.74 42.55 0.24 3.35 16 25 C -0.16 -4.44 8.36 22.36 0.19 -4.25 16 26 C -0.10 -2.23 10.18 22.47 0.23 -2.00 16 27 C -0.17 -3.34 10.11 22.36 0.23 -3.11 16 28 C 0.08 1.70 11.18 84.67 0.95 2.65 16 29 N -0.50 -13.75 10.27 -183.88 -1.89 -15.63 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.07 0.88 5.57 -2.38 -0.01 0.87 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.41 7.16 5.85 -92.71 -0.54 6.62 16 38 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.04 1.69 6.45 -2.39 -0.02 1.67 16 40 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.10 1.59 7.95 -2.39 -0.02 1.58 16 42 H 0.02 0.63 8.10 -2.39 -0.02 0.61 16 43 H 0.02 0.88 6.60 -2.39 -0.02 0.86 16 44 H 0.37 16.58 5.39 -92.71 -0.50 16.08 16 45 H 0.26 16.27 8.31 -92.70 -0.77 15.50 16 46 H 0.12 1.76 8.08 -2.39 -0.02 1.75 16 47 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 50 H 0.15 4.50 5.61 -2.91 -0.02 4.48 16 51 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 52 H 0.17 2.05 8.06 -2.91 -0.02 2.02 16 53 H 0.18 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -81.24 420.77 2.42 -78.82 By element: Atomic # 1 Polarization: 41.60 SS G_CDS: -0.23 Total: 41.37 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: 6.31 Total: -9.43 kcal Atomic # 7 Polarization: -132.38 SS G_CDS: -5.54 Total: -137.92 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.04 Total: -21.38 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.92 Total: 48.54 kcal Total: -81.24 2.42 -78.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166842526.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.035 kcal (2) G-P(sol) polarization free energy of solvation -81.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds