Wall clock time and date at job start Wed Apr 1 2020 03:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47055 * 2 1 4 4 C 1.53002 * 109.47055 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47132 * 180.02562 * 4 3 2 6 6 C 1.37101 * 120.00155 * 270.00167 * 5 4 3 7 7 H 1.08005 * 119.99870 * 53.25470 * 6 5 4 8 8 C 1.38953 * 120.00368 * 233.26694 * 6 5 4 9 9 N 1.31410 * 119.99821 * 196.54171 * 8 6 5 10 10 Si 1.86798 * 119.99658 * 16.54066 * 8 6 5 11 11 H 1.48499 * 109.47521 * 90.99722 * 10 8 6 12 12 H 1.48496 * 109.46976 * 210.99742 * 10 8 6 13 13 H 1.48506 * 109.47129 * 330.99534 * 10 8 6 14 14 C 1.34779 * 120.00425 * 89.99712 * 5 4 3 15 15 O 1.21296 * 119.99549 * 3.56634 * 14 5 4 16 16 C 1.50696 * 120.00224 * 183.56076 * 14 5 4 17 17 C 1.53121 * 109.52413 * 202.37637 * 16 14 5 18 18 C 1.53040 * 109.27849 * 182.37913 * 17 16 14 19 19 N 1.46848 * 109.52169 * 59.17668 * 18 17 16 20 20 C 1.46900 * 110.99382 * 174.15874 * 19 18 17 21 21 C 1.50708 * 109.46630 * 170.00326 * 20 19 18 22 22 C 1.38220 * 119.61856 * 94.73195 * 21 20 19 23 23 C 1.38636 * 119.15880 * 179.75260 * 22 21 20 24 24 C 1.38671 * 118.41644 * 0.50820 * 23 22 21 25 25 C 1.38178 * 119.16954 * 359.73014 * 24 23 22 26 26 N 1.31861 * 119.61367 * 274.99715 * 21 20 19 27 27 C 1.46842 * 111.19959 * 298.25972 * 19 18 17 28 28 C 1.53035 * 109.52544 * 61.74276 * 27 19 18 29 29 H 1.08995 * 109.46994 * 299.99637 * 1 2 3 30 30 H 1.08999 * 109.47123 * 59.99567 * 1 2 3 31 31 H 1.08997 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46925 * 240.00611 * 2 1 3 33 33 H 1.08999 * 109.47123 * 120.00433 * 2 1 3 34 34 H 1.09004 * 109.46755 * 60.00507 * 3 2 1 35 35 H 1.08999 * 109.47509 * 300.00197 * 3 2 1 36 36 H 1.08995 * 109.46994 * 60.00363 * 4 3 2 37 37 H 1.08999 * 109.47123 * 300.00433 * 4 3 2 38 38 H 0.97001 * 119.98938 * 179.97438 * 9 8 6 39 39 H 1.09001 * 109.52554 * 322.50209 * 16 14 5 40 40 H 1.08997 * 109.50315 * 62.43596 * 17 16 14 41 41 H 1.09006 * 109.53045 * 302.33618 * 17 16 14 42 42 H 1.09000 * 109.45863 * 299.15904 * 18 17 16 43 43 H 1.09003 * 109.44861 * 179.18808 * 18 17 16 44 44 H 1.09001 * 109.47174 * 289.99535 * 20 19 18 45 45 H 1.08992 * 109.47315 * 50.00392 * 20 19 18 46 46 H 1.07995 * 120.42345 * 359.97079 * 22 21 20 47 47 H 1.07998 * 120.78666 * 180.25838 * 23 22 21 48 48 H 1.08006 * 120.41317 * 179.71350 * 24 23 22 49 49 H 1.07996 * 119.62120 * 180.02562 * 25 24 23 50 50 H 1.09001 * 109.46072 * 181.76208 * 27 19 18 51 51 H 1.09010 * 109.46012 * 301.72276 * 27 19 18 52 52 H 1.09000 * 109.50404 * 180.88131 * 28 27 19 53 53 H 1.09001 * 109.53407 * 60.78387 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.2873 3.4704 -1.1858 7 1 3.5095 3.5182 -1.9335 8 6 5.5202 4.0642 -1.4270 9 7 5.6468 4.9466 -2.3925 10 14 6.9975 3.6081 -0.3787 11 1 7.7220 2.4760 -1.0100 12 1 7.9062 4.7774 -0.2685 13 1 6.5388 3.2084 0.9760 14 6 4.2825 3.4588 1.1687 15 8 4.1420 2.8666 2.2179 16 6 4.7077 4.9046 1.1705 17 6 5.4177 5.2275 2.4882 18 6 5.7942 6.7107 2.5089 19 7 4.5811 7.5269 2.3730 20 6 4.8877 8.9552 2.5275 21 6 3.6814 9.7724 2.1422 22 6 2.7965 10.1869 3.1198 23 6 1.6928 10.9425 2.7553 24 6 1.5140 11.2453 1.4139 25 6 2.4383 10.7919 0.4922 26 7 3.4796 10.0792 0.8758 27 6 3.9078 7.2685 1.0939 28 6 3.4749 5.8020 1.0309 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6767 1.9564 -0.8899 36 1 3.9337 0.9286 -0.8891 37 1 3.9330 0.9287 0.8908 38 1 6.5075 5.3613 -2.5605 39 1 5.3864 5.0857 0.3371 40 1 6.3199 4.6218 2.5733 41 1 4.7525 5.0092 3.3236 42 1 6.4709 6.9252 1.6817 43 1 6.2872 6.9469 3.4520 44 1 5.1490 9.1605 3.5656 45 1 5.7260 9.2187 1.8827 46 1 2.9646 9.9284 4.1548 47 1 0.9868 11.2837 3.4980 48 1 0.6629 11.8279 1.0936 49 1 2.3064 11.0237 -0.5543 50 1 3.0307 7.9100 1.0090 51 1 4.5933 7.4805 0.2733 52 1 2.9891 5.6067 0.0749 53 1 2.7783 5.5924 1.8426 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177210644.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:22 Heat of formation + Delta-G solvation = -11.750128 kcal Electronic energy + Delta-G solvation = -31778.866488 eV Core-core repulsion = 27842.654757 eV Total energy + Delta-G solvation = -3936.211731 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.59059 -41.06923 -39.23422 -37.13915 -35.92536 -34.93846 -33.85416 -33.31752 -32.27409 -31.73059 -30.15099 -27.99647 -26.60293 -25.48568 -24.53642 -24.07758 -23.88711 -22.44597 -21.97910 -21.62383 -20.44302 -19.18101 -17.84362 -17.56223 -17.22945 -17.12478 -16.83532 -16.48219 -16.22860 -16.12641 -15.79397 -15.63370 -15.29307 -15.13372 -14.74766 -14.59425 -14.44038 -14.24290 -14.03765 -13.92376 -13.69808 -13.52248 -13.34888 -13.22949 -13.03544 -12.87766 -12.75425 -12.47759 -12.32759 -12.29258 -12.08662 -12.07654 -11.95153 -11.85695 -11.54702 -11.43803 -11.38861 -10.93038 -10.72712 -10.38101 -10.28837 -9.97455 -9.46133 -9.34769 -8.53538 -6.31388 0.19059 0.42280 1.13220 1.22489 1.29953 1.88502 2.10105 2.64995 2.68211 2.86677 3.15658 3.36221 3.74566 3.77386 3.89966 3.93632 4.04115 4.07011 4.12446 4.20836 4.24315 4.28715 4.29493 4.34286 4.39850 4.47837 4.52839 4.56949 4.59230 4.69048 4.70718 4.78686 4.80412 4.82203 4.85847 4.89927 4.95218 4.96819 4.97175 5.06338 5.10401 5.18751 5.28279 5.29334 5.31760 5.35414 5.38506 5.47231 5.70208 5.83390 5.83676 5.96734 6.04399 6.41738 6.94873 7.11208 7.34934 7.80623 8.57792 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010699 B = 0.003498 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.417903 B = 8001.835258 C = 9014.579812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.116 4.116 4 C 0.104 3.896 5 N -0.483 5.483 6 C -0.340 4.340 7 H 0.072 0.928 8 C 0.054 3.946 9 N -0.887 5.887 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.268 1.268 13 H -0.257 1.257 14 C 0.498 3.502 15 O -0.612 6.612 16 C -0.103 4.103 17 C -0.098 4.098 18 C 0.063 3.937 19 N -0.528 5.528 20 C 0.103 3.897 21 C 0.107 3.893 22 C -0.156 4.156 23 C -0.078 4.078 24 C -0.170 4.170 25 C 0.078 3.922 26 N -0.515 5.515 27 C 0.084 3.916 28 C -0.080 4.080 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.040 0.960 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.279 0.721 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.023 0.977 43 H 0.111 0.889 44 H 0.120 0.880 45 H 0.041 0.959 46 H 0.155 0.845 47 H 0.166 0.834 48 H 0.163 0.837 49 H 0.165 0.835 50 H 0.075 0.925 51 H 0.016 0.984 52 H 0.056 0.944 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.514 9.616 9.284 14.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C -0.155 4.155 4 C -0.019 4.019 5 N -0.204 5.204 6 C -0.468 4.468 7 H 0.090 0.910 8 C -0.151 4.151 9 N -0.523 5.523 10 Si 0.719 3.281 11 H -0.204 1.204 12 H -0.192 1.192 13 H -0.182 1.182 14 C 0.289 3.711 15 O -0.498 6.498 16 C -0.124 4.124 17 C -0.136 4.136 18 C -0.065 4.065 19 N -0.253 5.253 20 C -0.025 4.025 21 C -0.029 4.029 22 C -0.176 4.176 23 C -0.104 4.104 24 C -0.189 4.189 25 C -0.079 4.079 26 N -0.225 5.225 27 C -0.044 4.044 28 C -0.119 4.119 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.041 0.959 43 H 0.129 0.871 44 H 0.138 0.862 45 H 0.059 0.941 46 H 0.172 0.828 47 H 0.183 0.817 48 H 0.181 0.819 49 H 0.183 0.817 50 H 0.094 0.906 51 H 0.034 0.966 52 H 0.075 0.925 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.175 9.012 9.399 14.411 hybrid contribution 0.949 0.216 -0.513 1.100 sum -5.226 9.228 8.886 13.836 Atomic orbital electron populations 1.21727 0.94658 1.02346 1.01611 1.21439 0.96847 0.94700 1.02399 1.21764 0.94763 0.98259 1.00671 1.21654 0.94989 0.83943 1.01283 1.43814 1.60393 1.11370 1.04852 1.18626 0.98679 1.34661 0.94821 0.91012 1.25892 0.99090 0.94348 0.95812 1.69763 1.26343 1.24441 1.31734 0.86631 0.81324 0.79033 0.81110 1.20408 1.19246 1.18167 1.20861 0.77875 0.89172 0.83240 1.90478 1.57784 1.69008 1.32508 1.21331 0.99431 0.92195 0.99407 1.21482 0.99907 0.95696 0.96522 1.22114 0.90484 0.91915 1.01977 1.62184 1.24821 1.05257 1.33062 1.21142 0.93092 0.85491 1.02755 1.21177 0.96763 0.95923 0.89073 1.22199 0.95172 0.98711 1.01536 1.22017 0.96636 0.94665 0.97044 1.22479 1.01045 1.01394 0.94015 1.23118 0.89920 0.93351 1.01490 1.67528 1.22687 1.12885 1.19404 1.21806 0.98254 0.94955 0.89401 1.21186 0.95907 0.93742 1.01039 0.93244 0.92839 0.90988 0.91072 0.91831 0.94084 0.92839 0.90624 0.92372 0.91133 0.90370 0.92434 0.90539 0.95917 0.87102 0.86212 0.94103 0.82753 0.81658 0.81907 0.81745 0.90644 0.96613 0.92530 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.91 71.98 0.71 -2.77 16 2 C -0.12 -3.27 5.93 30.59 0.18 -3.08 16 3 C -0.12 -4.28 5.54 30.59 0.17 -4.11 16 4 C 0.10 4.42 5.41 86.38 0.47 4.89 16 5 N -0.48 -23.89 1.94 -635.53 -1.23 -25.12 16 6 C -0.34 -18.11 8.82 84.04 0.74 -17.37 16 7 H 0.07 4.13 8.06 -2.91 -0.02 4.11 16 8 C 0.05 2.88 4.02 84.93 0.34 3.22 16 9 N -0.89 -49.35 13.96 21.66 0.30 -49.05 16 10 Si 0.89 42.96 24.79 68.60 1.70 44.66 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 13 H -0.26 -12.65 4.45 99.48 0.44 -12.21 16 14 C 0.50 24.81 4.36 87.66 0.38 25.19 16 15 O -0.61 -32.22 15.58 -3.08 -0.05 -32.27 16 16 C -0.10 -4.66 0.89 -11.46 -0.01 -4.67 16 17 C -0.10 -3.84 4.73 30.65 0.15 -3.70 16 18 C 0.06 2.03 5.42 86.33 0.47 2.49 16 19 N -0.53 -16.85 4.80 -900.91 -4.32 -21.18 16 20 C 0.10 2.67 5.59 85.56 0.48 3.15 16 21 C 0.11 2.81 4.91 42.55 0.21 3.01 16 22 C -0.16 -3.11 9.72 22.36 0.22 -2.90 16 23 C -0.08 -1.25 10.18 22.47 0.23 -1.03 16 24 C -0.17 -2.87 10.11 22.36 0.23 -2.64 16 25 C 0.08 1.79 11.18 84.67 0.95 2.74 16 26 N -0.51 -15.02 8.66 -183.88 -1.59 -16.61 16 27 C 0.08 3.19 4.71 86.33 0.41 3.59 16 28 C -0.08 -3.43 5.32 30.65 0.16 -3.27 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16 35 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.08 3.06 8.04 -2.39 -0.02 3.04 16 37 H 0.06 2.51 7.37 -2.39 -0.02 2.49 16 38 H 0.28 14.63 8.31 -92.71 -0.77 13.86 16 39 H 0.08 3.87 3.12 -2.39 -0.01 3.86 16 40 H 0.06 2.29 7.13 -2.39 -0.02 2.27 16 41 H 0.08 3.05 7.81 -2.38 -0.02 3.03 16 42 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.11 2.78 8.12 -2.39 -0.02 2.76 16 44 H 0.12 2.32 8.04 -2.39 -0.02 2.30 16 45 H 0.04 1.15 8.08 -2.39 -0.02 1.13 16 46 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 47 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 48 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 49 H 0.17 3.14 8.06 -2.91 -0.02 3.11 16 50 H 0.08 2.80 5.76 -2.39 -0.01 2.79 16 51 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 52 H 0.06 2.66 7.73 -2.39 -0.02 2.64 16 53 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -67.21 406.38 1.88 -65.33 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: 0.60 Total: 31.49 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 6.48 Total: 2.75 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -6.85 Total: -111.96 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -0.05 Total: -32.27 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.70 Total: 44.66 kcal Total: -67.21 1.88 -65.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177210644.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.578 kcal (2) G-P(sol) polarization free energy of solvation -67.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds