Wall clock time and date at job start Wed Apr 1 2020 03:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47120 * 2 1 4 4 C 1.53004 * 109.47120 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47112 * 179.97438 * 4 3 2 6 6 C 1.36908 * 119.99641 * 264.75380 * 5 4 3 7 7 H 1.08007 * 119.99824 * 142.78042 * 6 5 4 8 8 C 1.39007 * 120.00383 * 322.77191 * 6 5 4 9 9 N 1.31389 * 120.00623 * 159.95952 * 8 6 5 10 10 Si 1.86801 * 120.00070 * 339.95971 * 8 6 5 11 11 H 1.48505 * 109.47357 * 92.86835 * 10 8 6 12 12 H 1.48500 * 109.47504 * 212.87420 * 10 8 6 13 13 H 1.48504 * 109.47128 * 332.87018 * 10 8 6 14 14 C 1.34773 * 120.00150 * 84.75197 * 5 4 3 15 15 O 1.21636 * 120.00029 * 5.45349 * 14 5 4 16 16 C 1.47327 * 120.00170 * 185.45846 * 14 5 4 17 17 C 1.39791 * 120.21508 * 51.51918 * 16 14 5 18 18 C 1.37738 * 119.92009 * 180.02562 * 17 16 14 19 19 C 1.38624 * 120.35766 * 0.02562 * 18 17 16 20 20 C 1.37974 * 120.43210 * 359.72276 * 19 18 17 21 21 C 1.38936 * 120.07205 * 0.55641 * 20 19 18 22 22 N 1.38881 * 120.17918 * 179.72479 * 21 20 19 23 23 C 1.46960 * 110.99622 * 245.81922 * 22 21 20 24 24 C 1.53052 * 109.36282 * 183.18878 * 23 22 21 25 25 N 1.46956 * 109.36537 * 301.59709 * 24 23 22 26 26 C 1.46895 * 111.00127 * 183.19005 * 25 24 23 27 27 C 1.46953 * 110.88135 * 59.32041 * 25 24 23 28 28 C 1.46956 * 111.00249 * 9.61656 * 22 21 20 29 29 H 1.09005 * 109.46724 * 300.00231 * 1 2 3 30 30 H 1.08994 * 109.46817 * 60.00173 * 1 2 3 31 31 H 1.08998 * 109.47340 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47111 * 239.99739 * 2 1 3 33 33 H 1.09000 * 109.46964 * 119.99417 * 2 1 3 34 34 H 1.08998 * 109.47342 * 59.99880 * 3 2 1 35 35 H 1.09006 * 109.46859 * 300.00269 * 3 2 1 36 36 H 1.09005 * 109.46724 * 59.99769 * 4 3 2 37 37 H 1.08994 * 109.46817 * 299.99827 * 4 3 2 38 38 H 0.96998 * 120.00244 * 180.02562 * 9 8 6 39 39 H 1.07995 * 120.03935 * 0.02562 * 17 16 14 40 40 H 1.07996 * 119.81859 * 179.97438 * 18 17 16 41 41 H 1.07995 * 119.78074 * 179.97438 * 19 18 17 42 42 H 1.08004 * 119.96445 * 180.27760 * 20 19 18 43 43 H 1.08996 * 109.49065 * 63.21951 * 23 22 21 44 44 H 1.09001 * 109.48430 * 303.15215 * 23 22 21 45 45 H 1.09002 * 109.49017 * 181.63063 * 24 23 22 46 46 H 1.08996 * 109.48963 * 61.56493 * 24 23 22 47 47 H 1.08999 * 109.47452 * 60.00148 * 26 25 24 48 48 H 1.09002 * 109.47044 * 299.99579 * 26 25 24 49 49 H 1.09005 * 109.47031 * 179.97438 * 26 25 24 50 50 H 1.09004 * 109.48996 * 60.64775 * 27 25 24 51 51 H 1.09000 * 109.49350 * 180.71708 * 27 25 24 52 52 H 1.09010 * 109.48796 * 296.78429 * 28 22 21 53 53 H 1.08993 * 109.48875 * 56.82128 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.3893 3.4322 -1.1809 7 1 4.1714 4.4798 -1.3283 8 6 5.0058 2.7019 -2.1903 9 7 4.9724 3.1363 -3.4299 10 14 5.8819 1.1027 -1.7845 11 1 4.9429 -0.0344 -1.9598 12 1 7.0435 0.9301 -2.6934 13 1 6.3557 1.1411 -0.3776 14 6 4.1819 3.4953 1.1619 15 8 3.9835 2.9253 2.2180 16 6 4.5571 4.9200 1.1530 17 6 3.8537 5.8278 0.3560 18 6 4.2100 7.1583 0.3519 19 6 5.2642 7.6037 1.1343 20 6 5.9651 6.7213 1.9304 21 6 5.6247 5.3744 1.9438 22 7 6.3325 4.4833 2.7400 23 6 7.0707 3.5144 1.9178 24 6 7.7713 2.5045 2.8299 25 7 8.6782 3.2174 3.7403 26 6 9.4269 2.2749 4.5823 27 6 7.9401 4.1863 4.5624 28 6 7.2395 5.1962 3.6504 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 3.9337 0.9285 -0.8891 37 1 3.9330 0.9289 0.8908 38 1 5.4023 2.6265 -4.1342 39 1 3.0319 5.4863 -0.2558 40 1 3.6657 7.8581 -0.2647 41 1 5.5358 8.6488 1.1237 42 1 6.7823 7.0773 2.5403 43 1 7.8139 4.0386 1.3172 44 1 6.3759 2.9906 1.2613 45 1 8.3430 1.8021 2.2234 46 1 7.0261 1.9611 3.4108 47 1 10.0170 1.6119 3.9495 48 1 8.7289 1.6845 5.1759 49 1 10.0907 2.8289 5.2461 50 1 7.1968 3.6620 5.1631 51 1 8.6349 4.7102 5.2189 52 1 7.9847 5.7397 3.0694 53 1 6.6679 5.8988 4.2566 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186892378.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:12 Heat of formation + Delta-G solvation = 5.710002 kcal Electronic energy + Delta-G solvation = -32685.695620 eV Core-core repulsion = 28750.241017 eV Total energy + Delta-G solvation = -3935.454603 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.81527 -40.30796 -38.99175 -37.20881 -36.37747 -35.61269 -33.81974 -32.65071 -31.79409 -31.20683 -29.94709 -28.36739 -26.86819 -25.50864 -25.27285 -24.72995 -23.34283 -22.63696 -22.12725 -20.99679 -20.70881 -19.44177 -18.08394 -17.96378 -17.16120 -16.87434 -16.55224 -16.34221 -16.19518 -16.05410 -15.83835 -15.66303 -15.43112 -15.18135 -14.81017 -14.64925 -14.62540 -14.43905 -14.23885 -13.88689 -13.55009 -13.50202 -13.36611 -13.17915 -12.97389 -12.90470 -12.81810 -12.57104 -12.47091 -12.25578 -12.13639 -12.08130 -11.96142 -11.90251 -11.85965 -11.67070 -11.47907 -11.06483 -10.64068 -10.32413 -9.89036 -9.52428 -9.46161 -8.77114 -8.48268 -6.07882 0.25763 0.50138 1.13119 1.26444 1.35580 1.97436 2.15405 2.56137 2.67247 2.86109 2.97152 3.07590 3.72251 3.86042 3.92249 3.94498 4.00896 4.09195 4.10893 4.13386 4.21167 4.25675 4.26606 4.31516 4.40180 4.47663 4.52849 4.57330 4.58742 4.64330 4.69685 4.72150 4.72883 4.73562 4.84870 4.88875 4.90193 4.94464 4.96853 5.02173 5.09345 5.19307 5.29723 5.32333 5.38824 5.47481 5.50981 5.64144 5.81299 5.85789 6.01497 6.05645 6.10620 6.29271 6.40942 6.98186 7.44464 7.80584 8.64560 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008971 B = 0.004727 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.524341 B = 5921.889196 C = 6657.611702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 C -0.116 4.116 4 C 0.099 3.901 5 N -0.471 5.471 6 C -0.338 4.338 7 H 0.099 0.901 8 C 0.033 3.967 9 N -0.895 5.895 10 Si 0.912 3.088 11 H -0.258 1.258 12 H -0.287 1.287 13 H -0.270 1.270 14 C 0.529 3.471 15 O -0.599 6.599 16 C -0.137 4.137 17 C -0.071 4.071 18 C -0.152 4.152 19 C -0.078 4.078 20 C -0.178 4.178 21 C 0.127 3.873 22 N -0.494 5.494 23 C 0.070 3.930 24 C 0.068 3.932 25 N -0.549 5.549 26 C 0.026 3.974 27 C 0.059 3.941 28 C 0.052 3.948 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.277 0.723 39 H 0.113 0.887 40 H 0.147 0.853 41 H 0.162 0.838 42 H 0.155 0.845 43 H 0.041 0.959 44 H 0.054 0.946 45 H 0.083 0.917 46 H 0.027 0.973 47 H 0.072 0.928 48 H 0.023 0.977 49 H 0.091 0.909 50 H 0.030 0.970 51 H 0.115 0.885 52 H 0.060 0.940 53 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.110 2.909 11.150 12.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.158 4.158 3 C -0.154 4.154 4 C -0.024 4.024 5 N -0.191 5.191 6 C -0.465 4.465 7 H 0.117 0.883 8 C -0.170 4.170 9 N -0.532 5.532 10 Si 0.739 3.261 11 H -0.184 1.184 12 H -0.214 1.214 13 H -0.194 1.194 14 C 0.320 3.680 15 O -0.485 6.485 16 C -0.142 4.142 17 C -0.090 4.090 18 C -0.170 4.170 19 C -0.097 4.097 20 C -0.199 4.199 21 C 0.028 3.972 22 N -0.209 5.209 23 C -0.055 4.055 24 C -0.061 4.061 25 N -0.274 5.274 26 C -0.122 4.122 27 C -0.069 4.069 28 C -0.074 4.074 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.131 0.869 40 H 0.164 0.836 41 H 0.179 0.821 42 H 0.172 0.828 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.045 0.955 47 H 0.091 0.909 48 H 0.042 0.958 49 H 0.110 0.890 50 H 0.049 0.951 51 H 0.133 0.867 52 H 0.079 0.921 53 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.116 2.499 11.498 12.466 hybrid contribution 0.088 -1.109 -0.558 1.244 sum 4.204 1.390 10.940 11.802 Atomic orbital electron populations 1.21706 0.94011 1.02491 1.01861 1.21476 0.97464 0.94825 1.02045 1.21758 0.94032 0.98363 1.01266 1.21731 0.95818 0.84471 1.00370 1.43782 1.57440 1.12142 1.05778 1.19255 1.39206 0.97898 0.90189 0.88323 1.25751 0.96368 1.00307 0.94620 1.69772 1.42103 1.41315 1.00023 0.86409 0.79216 0.81824 0.78623 1.18440 1.21399 1.19437 1.18391 0.79150 0.87465 0.82984 1.90625 1.55784 1.70418 1.31638 1.19646 0.99045 0.93673 1.01845 1.21196 0.98783 0.93917 0.95095 1.21266 0.99677 0.94608 1.01466 1.21442 0.93693 1.00749 0.93785 1.21553 1.02810 0.91807 1.03702 1.18934 0.93712 0.92357 0.92236 1.58811 1.26737 1.16484 1.18900 1.22097 0.95177 0.93774 0.94497 1.21992 0.93988 0.94957 0.95155 1.62234 1.26736 1.17770 1.20659 1.22421 0.97616 0.95477 0.96656 1.22261 0.96389 0.93775 0.94486 1.22489 0.94115 0.96111 0.94716 0.92792 0.92727 0.90906 0.91970 0.91684 0.93169 0.92407 0.91949 0.92311 0.91274 0.86916 0.83574 0.82087 0.82766 0.94057 0.92786 0.89912 0.95515 0.90895 0.95821 0.88998 0.95142 0.86728 0.92148 0.88227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.91 71.98 0.71 -2.97 16 2 C -0.12 -3.76 5.93 30.60 0.18 -3.58 16 3 C -0.12 -4.57 5.50 30.60 0.17 -4.41 16 4 C 0.10 4.48 3.99 86.38 0.34 4.83 16 5 N -0.47 -23.34 2.19 -639.37 -1.40 -24.74 16 6 C -0.34 -17.88 8.92 84.09 0.75 -17.13 16 7 H 0.10 5.46 5.04 -2.91 -0.01 5.45 16 8 C 0.03 1.78 5.32 84.94 0.45 2.23 16 9 N -0.89 -49.80 13.96 21.67 0.30 -49.50 16 10 Si 0.91 42.64 24.96 68.60 1.71 44.35 16 11 H -0.26 -11.31 6.59 99.48 0.66 -10.66 16 12 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 13 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 14 C 0.53 26.13 4.45 86.64 0.39 26.52 16 15 O -0.60 -31.81 16.13 -4.14 -0.07 -31.88 16 16 C -0.14 -6.07 4.93 -19.98 -0.10 -6.17 16 17 C -0.07 -2.84 7.70 22.53 0.17 -2.67 16 18 C -0.15 -4.77 10.02 22.24 0.22 -4.55 16 19 C -0.08 -2.12 10.03 22.30 0.22 -1.89 16 20 C -0.18 -5.33 8.82 22.37 0.20 -5.14 16 21 C 0.13 4.87 5.41 38.72 0.21 5.08 16 22 N -0.49 -18.29 4.00 -694.02 -2.78 -21.07 16 23 C 0.07 2.78 5.21 86.31 0.45 3.23 16 24 C 0.07 2.27 5.62 86.31 0.49 2.76 16 25 N -0.55 -14.64 4.97 -921.95 -4.58 -19.22 16 26 C 0.03 0.52 9.60 127.69 1.23 1.75 16 27 C 0.06 1.42 5.62 86.31 0.49 1.90 16 28 C 0.05 1.40 4.31 86.31 0.37 1.78 16 29 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 36 H 0.06 2.88 3.25 -2.38 -0.01 2.87 16 37 H 0.06 2.70 7.51 -2.39 -0.02 2.68 16 38 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16 39 H 0.11 4.78 7.10 -2.91 -0.02 4.76 16 40 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 41 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 42 H 0.15 3.57 5.86 -2.91 -0.02 3.55 16 43 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.05 2.58 5.67 -2.39 -0.01 2.56 16 45 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 46 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 49 H 0.09 1.41 8.13 -2.38 -0.02 1.39 16 50 H 0.03 0.82 8.14 -2.38 -0.02 0.81 16 51 H 0.11 1.97 8.13 -2.39 -0.02 1.95 16 52 H 0.06 1.52 7.13 -2.38 -0.02 1.50 16 53 H 0.10 2.34 7.64 -2.39 -0.02 2.32 16 Total: -1.00 -67.07 404.06 0.96 -66.11 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: 0.83 Total: 34.38 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 6.94 Total: 1.57 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -8.46 Total: -114.54 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.07 Total: -31.88 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.71 Total: 44.35 kcal Total: -67.07 0.96 -66.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186892378.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.816 kcal (2) G-P(sol) polarization free energy of solvation -67.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds