Wall clock time and date at job start Wed Apr 1 2020 03:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46690 * 2 1 4 4 C 1.52999 * 109.47093 * 119.99687 * 2 1 3 5 5 H 1.08996 * 109.47321 * 295.33593 * 4 2 1 6 6 C 1.50706 * 109.46702 * 55.33646 * 4 2 1 7 7 O 1.21279 * 120.00362 * 34.54851 * 6 4 2 8 8 N 1.34777 * 119.99721 * 214.54896 * 6 4 2 9 9 C 1.46928 * 120.63110 * 354.12900 * 8 6 4 10 10 C 1.53619 * 108.54445 * 126.36907 * 9 8 6 11 11 C 1.53048 * 109.24080 * 54.85700 * 10 9 8 12 12 C 1.52998 * 109.45017 * 178.49813 * 11 10 9 13 13 N 1.46497 * 109.47347 * 295.06514 * 12 11 10 14 14 C 1.36930 * 120.00416 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99725 * 359.97438 * 14 13 12 16 16 C 1.38818 * 120.00291 * 179.97438 * 14 13 12 17 17 N 1.31614 * 119.99789 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00086 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.47136 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47140 * 119.99560 * 18 16 14 21 21 H 1.48499 * 109.47365 * 240.00157 * 18 16 14 22 22 C 1.53042 * 109.53434 * 298.51270 * 11 10 9 23 23 C 1.46922 * 120.62965 * 174.41147 * 8 6 4 24 24 C 1.50698 * 109.46939 * 175.33125 * 4 2 1 25 25 C 1.38650 * 120.79353 * 299.72105 * 24 4 2 26 26 C 1.38200 * 119.16473 * 179.79672 * 25 24 4 27 27 N 1.31876 * 120.76244 * 0.48787 * 26 25 24 28 28 C 1.31864 * 121.72470 * 359.74753 * 27 26 25 29 29 C 1.38203 * 120.76640 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.47114 * 304.92495 * 1 2 3 31 31 H 1.09003 * 109.47333 * 64.92558 * 1 2 3 32 32 H 1.09003 * 109.46885 * 184.92897 * 1 2 3 33 33 H 1.08999 * 109.47152 * 240.00047 * 2 1 3 34 34 H 1.08991 * 109.47293 * 299.99805 * 3 2 1 35 35 H 1.09001 * 109.46812 * 60.00329 * 3 2 1 36 36 H 1.08996 * 109.46856 * 179.97438 * 3 2 1 37 37 H 1.09000 * 109.58442 * 246.20508 * 9 8 6 38 38 H 1.09001 * 109.58712 * 6.62552 * 9 8 6 39 39 H 1.09004 * 109.63532 * 294.86627 * 10 9 8 40 40 H 1.09000 * 109.43574 * 174.72604 * 10 9 8 41 41 H 1.08998 * 109.45818 * 58.52835 * 11 10 9 42 42 H 1.09003 * 109.47084 * 55.06339 * 12 11 10 43 43 H 1.09002 * 109.47210 * 175.05728 * 12 11 10 44 44 H 0.97001 * 119.99362 * 359.97438 * 13 12 11 45 45 H 0.97006 * 120.00080 * 179.97438 * 17 16 14 46 46 H 1.08998 * 109.49919 * 301.41194 * 22 11 10 47 47 H 1.09000 * 109.49243 * 181.31872 * 22 11 10 48 48 H 1.08994 * 109.59048 * 353.37040 * 23 8 6 49 49 H 1.09007 * 109.58883 * 113.65372 * 23 8 6 50 50 H 1.08002 * 120.41867 * 0.02562 * 25 24 4 51 51 H 1.07994 * 119.62011 * 180.21037 * 26 25 24 52 52 H 1.08001 * 119.61657 * 179.97438 * 28 27 26 53 53 H 1.07999 * 120.41891 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7466 -0.1614 2.1372 6 6 1.4455 -2.1048 1.3084 7 8 1.2417 -2.7215 0.2842 8 7 1.1403 -2.6567 2.4995 9 6 1.4980 -1.9782 3.7526 10 6 0.2329 -1.8433 4.6135 11 6 -0.3966 -3.2251 4.8049 12 6 -1.6364 -3.1016 5.6929 13 7 -1.2356 -2.6676 7.0335 14 6 -2.1821 -2.4879 8.0065 15 1 -3.2242 -2.6658 7.7856 16 6 -1.8023 -2.0771 9.2770 17 7 -0.5323 -1.8608 9.5463 18 14 -3.0936 -1.8313 10.6041 19 1 -4.4371 -2.1377 10.0504 20 1 -2.8095 -2.7382 11.7452 21 1 -3.0611 -0.4222 11.0716 22 6 -0.7993 -3.7970 3.4437 23 6 0.4491 -3.9513 2.5695 24 6 3.5426 -0.8221 1.1928 25 6 4.1703 -1.4953 0.1559 26 6 5.5505 -1.5635 0.1351 27 7 6.2678 -1.0062 1.0911 28 6 5.7048 -0.3623 2.0948 29 6 4.3300 -0.2492 2.1798 30 1 -0.3633 0.5883 0.8426 31 1 -0.3634 0.4355 -0.9308 32 1 -0.3633 -1.0239 0.0883 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.1299 1.4426 0.0005 37 1 2.2453 -2.5658 4.2859 38 1 1.8982 -0.9888 3.5311 39 1 -0.4796 -1.1846 4.1169 40 1 0.4981 -1.4266 5.5852 41 1 0.3250 -3.8903 5.2791 42 1 -2.3197 -2.3692 5.2630 43 1 -2.1346 -4.0689 5.7579 44 1 -0.2996 -2.5082 7.2320 45 1 -0.2669 -1.5734 10.4340 46 1 -1.5020 -3.1199 2.9581 47 1 -1.2688 -4.7708 3.5827 48 1 0.1569 -4.2642 1.5671 49 1 1.1135 -4.6972 3.0059 50 1 3.5882 -1.9573 -0.6278 51 1 6.0471 -2.0831 -0.6709 52 1 6.3251 0.0810 2.8596 53 1 3.8748 0.2791 3.0045 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206030596.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:43 Heat of formation + Delta-G solvation = -23.633316 kcal Electronic energy + Delta-G solvation = -31332.356201 eV Core-core repulsion = 27395.629176 eV Total energy + Delta-G solvation = -3936.727024 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.05666 -40.72430 -39.13891 -37.14916 -36.54280 -34.52576 -33.58409 -32.47288 -32.13429 -31.89607 -29.26539 -28.04218 -27.90605 -25.53593 -24.60971 -24.26734 -23.78824 -23.13721 -21.91015 -20.91694 -19.85251 -19.17057 -18.37518 -18.01731 -17.11132 -16.86190 -16.69984 -16.54906 -16.11463 -15.68417 -15.53749 -15.38952 -15.32237 -15.24339 -14.92947 -14.55879 -14.51996 -14.22707 -14.07093 -13.90230 -13.57013 -13.38358 -13.31617 -13.06192 -13.02010 -12.91134 -12.77751 -12.63238 -12.27841 -12.14924 -12.09206 -11.96121 -11.95314 -11.69478 -11.66819 -11.48236 -11.32840 -11.04043 -10.90953 -10.44962 -10.33020 -10.08942 -9.68302 -8.96866 -7.94181 -5.21663 0.19073 0.19883 1.48162 1.48668 1.52690 1.58313 1.93816 2.56762 2.82901 3.38223 3.39599 3.44542 3.60022 3.62899 3.72106 3.75721 3.88934 3.93716 4.07140 4.08872 4.16811 4.22004 4.26715 4.29682 4.37097 4.37660 4.49818 4.57768 4.62678 4.68971 4.73481 4.76487 4.79427 4.84806 4.89524 4.92836 4.95089 4.95501 5.01808 5.04595 5.07319 5.17101 5.19671 5.27267 5.29745 5.34576 5.42598 5.48407 5.54300 5.56458 5.75572 6.28966 6.34977 7.02054 7.08184 7.35941 8.11944 8.36254 9.29232 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013537 B = 0.002540 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.891776 B =11021.630300 C =11624.606158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.070 4.070 3 C -0.141 4.141 4 C -0.064 4.064 5 H 0.119 0.881 6 C 0.527 3.473 7 O -0.568 6.568 8 N -0.606 5.606 9 C 0.109 3.891 10 C -0.118 4.118 11 C -0.084 4.084 12 C 0.158 3.842 13 N -0.742 5.742 14 C -0.244 4.244 15 H 0.071 0.929 16 C -0.072 4.072 17 N -0.965 5.965 18 Si 0.969 3.031 19 H -0.269 1.269 20 H -0.294 1.294 21 H -0.292 1.292 22 C -0.114 4.114 23 C 0.115 3.885 24 C -0.032 4.032 25 C -0.167 4.167 26 C 0.091 3.909 27 N -0.510 5.510 28 C 0.093 3.907 29 C -0.162 4.162 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.376 0.624 45 H 0.251 0.749 46 H 0.064 0.936 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.073 0.927 50 H 0.133 0.867 51 H 0.171 0.829 52 H 0.179 0.821 53 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.290 4.421 -21.153 23.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.089 4.089 3 C -0.198 4.198 4 C -0.085 4.085 5 H 0.137 0.863 6 C 0.316 3.684 7 O -0.448 6.448 8 N -0.338 5.338 9 C -0.013 4.013 10 C -0.156 4.156 11 C -0.103 4.103 12 C 0.031 3.969 13 N -0.385 5.385 14 C -0.376 4.376 15 H 0.089 0.911 16 C -0.265 4.265 17 N -0.616 5.616 18 Si 0.798 3.202 19 H -0.194 1.194 20 H -0.221 1.221 21 H -0.219 1.219 22 C -0.153 4.153 23 C -0.007 4.007 24 C -0.041 4.041 25 C -0.187 4.187 26 C -0.065 4.065 27 N -0.219 5.219 28 C -0.064 4.064 29 C -0.182 4.182 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.123 0.877 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.209 0.791 45 H 0.060 0.940 46 H 0.083 0.917 47 H 0.104 0.896 48 H 0.104 0.896 49 H 0.092 0.908 50 H 0.150 0.850 51 H 0.188 0.812 52 H 0.196 0.804 53 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 9.896 4.014 -21.668 24.156 hybrid contribution -1.375 -0.014 1.204 1.828 sum 8.521 4.000 -20.463 22.525 Atomic orbital electron populations 1.21886 0.94606 1.01411 1.02810 1.20947 0.96020 0.96577 0.95323 1.21807 1.00857 0.94094 1.03059 1.20565 0.91467 0.93470 1.03037 0.86343 1.20616 0.77194 0.87901 0.82665 1.90649 1.55460 1.64219 1.34431 1.48239 1.57580 1.21847 1.06121 1.22035 0.96812 0.98825 0.83600 1.21889 0.96967 0.96898 0.99868 1.21187 0.96815 0.97201 0.95125 1.20805 0.95366 0.96077 0.84643 1.42549 1.06704 1.81579 1.07638 1.19624 0.90163 1.36563 0.91222 0.91108 1.25481 0.97993 1.03210 0.99777 1.69793 1.15823 1.54693 1.21324 0.85144 0.78888 0.76862 0.79289 1.19385 1.22121 1.21939 1.21803 0.97193 1.02224 0.94045 1.21590 0.93543 0.84482 1.01098 1.19861 0.93857 0.95775 0.94591 1.22143 0.96351 1.00353 0.99805 1.23028 0.90860 0.95857 0.96756 1.67714 1.41931 1.09212 1.03063 1.23198 0.93123 0.94457 0.95578 1.22343 0.95055 1.01022 0.99751 0.91897 0.91328 0.94107 0.91119 0.91418 0.91468 0.92854 0.90545 0.87712 0.91764 0.91465 0.91532 0.96596 0.96607 0.79088 0.93991 0.91741 0.89630 0.89626 0.90840 0.84953 0.81216 0.80440 0.82212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.95 71.98 0.64 -2.02 16 2 C -0.07 -1.17 2.04 -10.79 -0.02 -1.19 16 3 C -0.14 -1.84 9.00 71.98 0.65 -1.19 16 4 C -0.06 -1.13 1.29 -12.28 -0.02 -1.15 16 5 H 0.12 1.74 5.78 -2.39 -0.01 1.72 16 6 C 0.53 12.16 5.21 87.66 0.46 12.62 16 7 O -0.57 -16.31 14.53 -3.03 -0.04 -16.35 16 8 N -0.61 -13.46 2.97 -818.08 -2.43 -15.88 16 9 C 0.11 2.24 6.33 86.51 0.55 2.78 16 10 C -0.12 -3.10 5.26 30.82 0.16 -2.94 16 11 C -0.08 -2.43 2.19 -10.76 -0.02 -2.45 16 12 C 0.16 5.98 5.65 86.38 0.49 6.47 16 13 N -0.74 -36.12 5.32 -343.46 -1.83 -37.94 16 14 C -0.24 -13.33 9.99 84.04 0.84 -12.49 16 15 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 16 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 17 N -0.97 -57.24 13.06 21.65 0.28 -56.96 16 18 Si 0.97 45.30 29.55 68.60 2.03 47.32 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 22 C -0.11 -2.68 5.36 30.67 0.16 -2.51 16 23 C 0.12 2.58 6.41 86.36 0.55 3.14 16 24 C -0.03 -0.56 3.75 -19.67 -0.07 -0.63 16 25 C -0.17 -3.16 8.88 22.36 0.20 -2.96 16 26 C 0.09 1.68 11.18 84.68 0.95 2.63 16 27 N -0.51 -10.36 10.36 -195.85 -2.03 -12.39 16 28 C 0.09 1.52 11.18 84.68 0.95 2.47 16 29 C -0.16 -2.40 9.67 22.36 0.22 -2.19 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.04 0.91 6.31 -2.39 -0.02 0.90 16 33 H 0.07 1.37 7.20 -2.39 -0.02 1.35 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.05 0.73 7.37 -2.39 -0.02 0.71 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.10 1.66 5.26 -2.39 -0.01 1.65 16 39 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.07 2.10 7.15 -2.39 -0.02 2.08 16 41 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.38 19.17 6.84 -92.71 -0.63 18.53 16 45 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 46 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 47 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.09 2.03 7.04 -2.39 -0.02 2.02 16 49 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 50 H 0.13 2.64 7.28 -2.91 -0.02 2.62 16 51 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 52 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 53 H 0.16 1.57 8.01 -2.91 -0.02 1.55 16 Total: -1.00 -68.23 413.16 3.39 -64.84 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 0.26 Total: 32.56 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 7.15 Total: -5.19 kcal Atomic # 7 Polarization: -117.18 SS G_CDS: -6.00 Total: -123.18 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.04 Total: -16.35 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -68.23 3.39 -64.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206030596.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.209 kcal (2) G-P(sol) polarization free energy of solvation -68.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds