Wall clock time and date at job start Wed Apr 1 2020 03:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46602 * 2 1 4 4 C 1.53003 * 109.47043 * 174.87787 * 3 2 1 5 5 H 1.09003 * 109.46459 * 305.45372 * 4 3 2 6 6 C 1.50690 * 109.47282 * 65.45953 * 4 3 2 7 7 O 1.21281 * 120.00246 * 24.10216 * 6 4 3 8 8 N 1.34777 * 119.99905 * 204.10232 * 6 4 3 9 9 C 1.46927 * 120.63278 * 354.69508 * 8 6 4 10 10 C 1.53625 * 108.54154 * 126.37012 * 9 8 6 11 11 C 1.53040 * 109.24236 * 54.86029 * 10 9 8 12 12 C 1.53002 * 109.44950 * 178.49826 * 11 10 9 13 13 N 1.46498 * 109.46901 * 295.06170 * 12 11 10 14 14 C 1.36939 * 119.99994 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99601 * 359.97438 * 14 13 12 16 16 C 1.38809 * 120.00089 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99994 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99949 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47029 * 90.00314 * 18 16 14 20 20 H 1.48508 * 109.47152 * 210.00035 * 18 16 14 21 21 H 1.48494 * 109.47265 * 330.00047 * 18 16 14 22 22 C 1.53039 * 109.53855 * 298.51128 * 11 10 9 23 23 C 1.46930 * 120.63293 * 174.97878 * 8 6 4 24 24 C 1.50701 * 109.46913 * 185.46316 * 4 3 2 25 25 C 1.38231 * 119.61471 * 274.99462 * 24 4 3 26 26 C 1.38631 * 119.15950 * 180.02562 * 25 24 4 27 27 C 1.38674 * 118.42013 * 359.97438 * 26 25 24 28 28 C 1.38183 * 119.16479 * 0.27772 * 27 26 25 29 29 N 1.31853 * 119.62177 * 95.02374 * 24 4 3 30 30 H 1.09005 * 109.46717 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47597 * 300.00083 * 1 2 3 32 32 H 1.09002 * 109.47441 * 60.00409 * 1 2 3 33 33 H 1.08997 * 109.47423 * 240.00789 * 2 1 3 34 34 H 1.08996 * 109.47013 * 119.99492 * 2 1 3 35 35 H 1.08998 * 109.47548 * 54.87359 * 3 2 1 36 36 H 1.09006 * 109.47351 * 294.87524 * 3 2 1 37 37 H 1.08994 * 109.58968 * 246.20206 * 9 8 6 38 38 H 1.08998 * 109.58388 * 6.63352 * 9 8 6 39 39 H 1.09008 * 109.63525 * 294.86833 * 10 9 8 40 40 H 1.08998 * 109.43289 * 174.72926 * 10 9 8 41 41 H 1.09000 * 109.45831 * 58.52900 * 11 10 9 42 42 H 1.09001 * 109.47260 * 55.06139 * 12 11 10 43 43 H 1.08999 * 109.46957 * 175.06213 * 12 11 10 44 44 H 0.97001 * 120.00273 * 0.02562 * 13 12 11 45 45 H 0.97006 * 120.00110 * 180.02562 * 17 16 14 46 46 H 1.09013 * 109.49761 * 301.41263 * 22 11 10 47 47 H 1.08997 * 109.52818 * 181.33150 * 22 11 10 48 48 H 1.09005 * 109.58034 * 353.37439 * 23 8 6 49 49 H 1.09001 * 109.58537 * 113.65142 * 23 8 6 50 50 H 1.07998 * 120.42061 * 0.04546 * 25 24 4 51 51 H 1.08001 * 120.78630 * 180.02562 * 26 25 24 52 52 H 1.08001 * 120.41585 * 180.02562 * 27 26 25 53 53 H 1.07996 * 119.61668 * 179.70489 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5645 1.4446 0.1288 5 1 3.8552 0.8741 1.0109 6 6 4.1731 0.8170 -1.0986 7 8 3.5572 0.8066 -2.1433 8 7 5.4020 0.2673 -1.0354 9 6 6.2077 0.3736 0.1887 10 6 6.6426 -1.0379 0.6114 11 6 7.3621 -1.7152 -0.5572 12 6 7.8303 -3.1075 -0.1292 13 7 8.8376 -2.9806 0.9270 14 6 9.4054 -4.1022 1.4699 15 1 9.1103 -5.0803 1.1197 16 6 10.3602 -3.9820 2.4703 17 7 10.9056 -5.0601 2.9924 18 14 10.8710 -2.2902 3.0754 19 1 9.9966 -1.8835 4.2047 20 1 12.2830 -2.3338 3.5336 21 1 10.7397 -1.3083 1.9692 22 6 6.4040 -1.8419 -1.7438 23 6 5.9641 -0.4445 -2.1914 24 6 4.0553 2.8631 0.2637 25 6 4.2796 3.6191 -0.8715 26 6 4.7316 4.9227 -0.7365 27 6 4.9414 5.4195 0.5411 28 6 4.7003 4.6026 1.6293 29 7 4.2662 3.3684 1.4632 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 1.6035 1.9822 0.8405 36 1 1.7534 1.9292 -0.9324 37 1 7.0874 0.9873 -0.0050 38 1 5.6110 0.8261 0.9806 39 1 5.7660 -1.6239 0.8878 40 1 7.3183 -0.9690 1.4639 41 1 8.2244 -1.1158 -0.8492 42 1 6.9802 -3.6773 0.2460 43 1 8.2645 -3.6239 -0.9852 44 1 9.1023 -2.1021 1.2418 45 1 11.5726 -4.9761 3.6918 46 1 5.5296 -2.4204 -1.4453 47 1 6.9093 -2.3456 -2.5679 48 1 5.2066 -0.5318 -2.9703 49 1 6.8228 0.1053 -2.5767 50 1 4.1048 3.1997 -1.8513 51 1 4.9151 5.5370 -1.6056 52 1 5.2927 6.4308 0.6837 53 1 4.8658 4.9805 2.6273 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206050565.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:40 Heat of formation + Delta-G solvation = -23.420808 kcal Electronic energy + Delta-G solvation = -31215.512323 eV Core-core repulsion = 27278.794514 eV Total energy + Delta-G solvation = -3936.717809 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.04712 -40.71259 -39.14908 -36.80035 -36.42646 -34.59005 -33.70726 -33.31048 -32.65569 -32.02092 -30.12825 -28.54083 -26.23362 -25.20987 -24.55299 -24.37000 -23.71329 -22.71767 -22.33183 -21.29879 -19.98234 -19.61287 -18.58118 -17.91438 -17.26677 -16.89604 -16.62692 -16.33176 -16.17955 -16.02554 -15.71727 -15.56569 -15.30429 -15.10755 -14.82312 -14.70321 -14.39448 -14.23950 -14.11633 -14.01220 -13.92615 -13.62820 -13.39920 -13.23674 -13.07153 -12.82138 -12.79656 -12.59306 -12.30308 -12.20251 -12.13868 -11.89158 -11.88416 -11.71225 -11.60406 -11.52699 -11.41915 -10.97522 -10.87442 -10.81131 -10.45144 -9.96207 -9.71457 -9.29222 -8.02737 -5.36278 0.07776 0.30251 1.37125 1.41759 1.44638 1.48922 1.88871 2.48643 2.75450 3.13779 3.28676 3.38675 3.55417 3.70016 3.77416 3.80734 3.85369 3.94500 4.03950 4.05436 4.12457 4.13543 4.20283 4.22101 4.28355 4.34611 4.43952 4.52097 4.56659 4.65154 4.69072 4.74879 4.78471 4.80024 4.84090 4.88107 4.89686 4.96359 5.00072 5.06944 5.10938 5.15757 5.19220 5.22784 5.24636 5.31778 5.39158 5.46581 5.52451 5.72369 5.75736 6.21295 6.29382 6.96372 7.04225 7.08319 7.84190 8.04315 9.19113 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010696 B = 0.002952 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.131545 B = 9483.234093 C =10609.627125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C -0.088 4.088 4 C -0.057 4.057 5 H 0.112 0.888 6 C 0.530 3.470 7 O -0.563 6.563 8 N -0.604 5.604 9 C 0.111 3.889 10 C -0.123 4.123 11 C -0.087 4.087 12 C 0.160 3.840 13 N -0.755 5.755 14 C -0.236 4.236 15 H 0.053 0.947 16 C -0.066 4.066 17 N -0.986 5.986 18 Si 0.955 3.045 19 H -0.275 1.275 20 H -0.296 1.296 21 H -0.249 1.249 22 C -0.116 4.116 23 C 0.115 3.885 24 C 0.127 3.873 25 C -0.178 4.178 26 C -0.073 4.073 27 C -0.167 4.167 28 C 0.092 3.908 29 N -0.498 5.498 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.019 0.981 43 H 0.024 0.976 44 H 0.367 0.633 45 H 0.258 0.742 46 H 0.063 0.937 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.080 0.920 50 H 0.125 0.875 51 H 0.158 0.842 52 H 0.167 0.833 53 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.975 24.852 -8.329 31.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C -0.126 4.126 4 C -0.079 4.079 5 H 0.130 0.870 6 C 0.318 3.682 7 O -0.442 6.442 8 N -0.336 5.336 9 C -0.011 4.011 10 C -0.162 4.162 11 C -0.106 4.106 12 C 0.034 3.966 13 N -0.401 5.401 14 C -0.367 4.367 15 H 0.071 0.929 16 C -0.257 4.257 17 N -0.637 5.637 18 Si 0.782 3.218 19 H -0.201 1.201 20 H -0.223 1.223 21 H -0.173 1.173 22 C -0.155 4.155 23 C -0.007 4.007 24 C -0.010 4.010 25 C -0.198 4.198 26 C -0.099 4.099 27 C -0.186 4.186 28 C -0.064 4.064 29 N -0.208 5.208 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.038 0.962 43 H 0.042 0.958 44 H 0.201 0.799 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.108 0.892 48 H 0.106 0.894 49 H 0.098 0.902 50 H 0.143 0.857 51 H 0.176 0.824 52 H 0.185 0.815 53 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -18.427 24.096 -8.150 31.410 hybrid contribution 0.959 0.568 -0.068 1.116 sum -17.468 24.663 -8.218 31.320 Atomic orbital electron populations 1.21708 0.94436 1.02120 1.02099 1.21533 0.97245 0.95818 1.01637 1.21399 0.90251 0.98170 1.02756 1.20308 0.97812 0.92315 0.97467 0.87017 1.20440 0.80550 0.77546 0.89653 1.90658 1.61825 1.59664 1.32033 1.48202 1.15885 1.54186 1.15332 1.21937 0.95770 0.97132 0.86261 1.21962 1.00589 0.95490 0.98135 1.21248 0.98253 0.95489 0.95579 1.20800 0.90240 0.95783 0.89774 1.42700 1.48379 1.04081 1.44988 1.19040 1.16122 0.87388 1.14124 0.92915 1.25549 0.99578 1.00998 0.99567 1.69898 1.32809 1.29627 1.31326 0.85404 0.77070 0.80334 0.78995 1.20095 1.22302 1.17291 1.21816 0.99033 0.96643 0.97961 1.21645 0.99168 0.91931 0.87921 1.20519 0.96517 0.94828 0.89183 1.22081 1.01727 0.96343 0.99622 1.21932 0.94251 0.94421 0.99322 1.22530 1.00580 1.02759 0.92719 1.23281 0.93581 0.88501 1.01078 1.67427 1.12662 1.15439 1.25254 0.92254 0.91871 0.92771 0.93161 0.91763 0.90309 0.91556 0.90433 0.88882 0.91636 0.91280 0.90529 0.96245 0.95840 0.79940 0.93324 0.91860 0.89207 0.89356 0.90214 0.85704 0.82444 0.81513 0.80149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.91 71.98 0.71 -1.64 16 2 C -0.12 -2.41 5.65 30.59 0.17 -2.24 16 3 C -0.09 -1.71 4.35 30.60 0.13 -1.57 16 4 C -0.06 -1.18 1.67 -12.29 -0.02 -1.20 16 5 H 0.11 2.29 6.56 -2.39 -0.02 2.28 16 6 C 0.53 12.48 4.93 87.65 0.43 12.91 16 7 O -0.56 -15.89 14.10 -3.03 -0.04 -15.94 16 8 N -0.60 -13.30 2.97 -818.08 -2.43 -15.72 16 9 C 0.11 2.37 6.22 86.51 0.54 2.90 16 10 C -0.12 -3.16 5.26 30.82 0.16 -3.00 16 11 C -0.09 -2.34 2.19 -10.77 -0.02 -2.37 16 12 C 0.16 5.91 5.65 86.38 0.49 6.40 16 13 N -0.76 -34.71 5.12 -343.45 -1.76 -36.47 16 14 C -0.24 -13.53 10.47 84.03 0.88 -12.65 16 15 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 16 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 17 N -0.99 -63.60 13.97 21.65 0.30 -63.30 16 18 Si 0.96 44.83 27.73 68.60 1.90 46.73 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 21 H -0.25 -10.34 6.52 99.48 0.65 -9.70 16 22 C -0.12 -2.58 5.36 30.67 0.16 -2.42 16 23 C 0.12 2.40 6.42 86.36 0.55 2.96 16 24 C 0.13 2.56 5.27 42.55 0.22 2.78 16 25 C -0.18 -3.33 9.18 22.36 0.21 -3.12 16 26 C -0.07 -0.99 10.18 22.47 0.23 -0.76 16 27 C -0.17 -1.86 10.11 22.36 0.23 -1.64 16 28 C 0.09 1.32 11.18 84.67 0.95 2.27 16 29 N -0.50 -9.85 10.27 -183.88 -1.89 -11.74 16 30 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 1.16 7.01 -2.39 -0.02 1.15 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 1.42 7.67 -2.38 -0.02 1.41 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 1.90 5.27 -2.39 -0.01 1.89 16 39 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.07 1.96 7.15 -2.39 -0.02 1.94 16 41 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.37 15.81 4.70 -92.71 -0.44 15.38 16 45 H 0.26 15.80 8.31 -92.70 -0.77 15.03 16 46 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 47 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.09 1.95 7.04 -2.38 -0.02 1.93 16 49 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.12 2.60 6.79 -2.91 -0.02 2.58 16 51 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 52 H 0.17 0.77 8.06 -2.91 -0.02 0.74 16 53 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -72.87 412.97 2.97 -69.90 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: 0.39 Total: 32.32 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 6.49 Total: -5.78 kcal Atomic # 7 Polarization: -121.46 SS G_CDS: -5.77 Total: -127.23 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.04 Total: -15.94 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.90 Total: 46.73 kcal Total: -72.87 2.97 -69.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206050565.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.476 kcal (2) G-P(sol) polarization free energy of solvation -72.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds