Wall clock time and date at job start Wed Apr 1 2020 04:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47030 * 2 1 4 4 N 1.46904 * 109.47419 * 180.02562 * 3 2 1 5 5 C 1.46899 * 111.00243 * 66.04136 * 4 3 2 6 6 C 1.46895 * 111.00476 * 190.00000 * 4 3 2 7 7 C 1.50694 * 109.47696 * 169.99517 * 6 4 3 8 8 O 1.21284 * 119.99566 * 0.02562 * 7 6 4 9 9 N 1.34774 * 120.00780 * 179.97438 * 7 6 4 10 10 C 1.47010 * 125.65318 * 180.02562 * 9 7 6 11 11 C 1.54326 * 107.27332 * 178.90619 * 10 9 7 12 12 H 1.08993 * 110.72496 * 96.34820 * 11 10 9 13 13 C 1.50706 * 110.71955 * 219.44602 * 11 10 9 14 14 C 1.38233 * 120.00109 * 58.26784 * 13 11 10 15 15 C 1.38238 * 119.99749 * 179.78525 * 14 13 11 16 16 C 1.38234 * 120.00078 * 0.44989 * 15 14 13 17 17 C 1.38238 * 120.00032 * 359.80374 * 16 15 14 18 18 C 1.38235 * 120.00123 * 359.97438 * 17 16 15 19 19 C 1.55157 * 102.93935 * 337.80483 * 11 10 9 20 20 H 1.09004 * 111.00868 * 277.42680 * 19 11 10 21 21 N 1.46503 * 111.00104 * 153.57868 * 19 11 10 22 22 C 1.36944 * 119.99631 * 155.00421 * 21 19 11 23 23 H 1.07996 * 120.00044 * 359.97438 * 22 21 19 24 24 C 1.38814 * 119.99829 * 179.97438 * 22 21 19 25 25 N 1.31627 * 119.99581 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00253 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47101 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47041 * 119.99730 * 26 24 22 29 29 H 1.48498 * 109.47484 * 239.99955 * 26 24 22 30 30 C 1.47426 * 125.64300 * 359.96063 * 9 7 6 31 31 H 1.08996 * 109.46925 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47463 * 300.00531 * 1 2 3 33 33 H 1.09006 * 109.47158 * 60.00033 * 1 2 3 34 34 H 1.09003 * 109.47409 * 240.00291 * 2 1 3 35 35 H 1.08999 * 109.47110 * 119.99573 * 2 1 3 36 36 H 1.09001 * 109.47519 * 59.99807 * 3 2 1 37 37 H 1.09008 * 109.47369 * 299.99504 * 3 2 1 38 38 H 1.09000 * 109.47182 * 183.95835 * 5 4 3 39 39 H 1.09004 * 109.47245 * 303.96028 * 5 4 3 40 40 H 1.09001 * 109.46953 * 63.95694 * 5 4 3 41 41 H 1.09006 * 109.47403 * 49.99358 * 6 4 3 42 42 H 1.08994 * 109.47071 * 290.00069 * 6 4 3 43 43 H 1.09000 * 109.88717 * 59.49056 * 10 9 7 44 44 H 1.09001 * 110.01382 * 298.39165 * 10 9 7 45 45 H 1.08004 * 119.99934 * 0.02562 * 14 13 11 46 46 H 1.07999 * 119.99925 * 180.27297 * 15 14 13 47 47 H 1.08002 * 120.00276 * 179.83134 * 16 15 14 48 48 H 1.08000 * 120.00524 * 180.02562 * 17 16 15 49 49 H 1.07999 * 120.00181 * 179.97438 * 18 17 16 50 50 H 0.96999 * 120.00312 * 334.99982 * 21 19 11 51 51 H 0.97001 * 119.99130 * 180.02562 * 25 24 22 52 52 H 1.09006 * 110.36857 * 323.00309 * 30 9 7 53 53 H 1.08994 * 110.36815 * 85.21438 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0350 0.8859 -1.2542 6 6 4.0355 2.7931 0.2375 7 6 5.5219 2.7184 0.4743 8 8 6.0870 1.6456 0.4469 9 7 6.2234 3.8436 0.7155 10 6 7.6710 3.9146 0.9616 11 6 8.0299 5.4026 1.1583 12 1 8.0629 5.6546 2.2182 13 6 9.3433 5.7267 0.4941 14 6 9.5042 5.5099 -0.8616 15 6 10.7075 5.8114 -1.4717 16 6 11.7528 6.3208 -0.7243 17 6 11.5936 6.5326 0.6324 18 6 10.3889 6.2355 1.2417 19 6 6.8610 6.1383 0.4514 20 1 7.0298 6.1975 -0.6239 21 7 6.6576 7.4718 1.0230 22 6 6.0743 8.4571 0.2717 23 1 5.7647 8.2512 -0.7422 24 6 5.8811 9.7205 0.8135 25 7 6.2581 9.9712 2.0494 26 14 5.0862 11.0647 -0.2114 27 1 4.7571 10.5314 -1.5578 28 1 3.8426 11.5262 0.4562 29 1 6.0274 12.2052 -0.3478 30 6 5.6662 5.2072 0.7749 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5139 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6767 1.9564 -0.8901 38 1 5.1223 0.8326 -1.2000 39 1 3.6293 -0.1144 -1.4060 40 1 3.7436 1.5264 -2.0866 41 1 3.5494 3.2236 1.1130 42 1 3.8372 3.4190 -0.6325 43 1 8.2129 3.5128 0.1055 44 1 7.9250 3.3504 1.8590 45 1 8.6885 5.1087 -1.4449 46 1 10.8318 5.6462 -2.5317 47 1 12.6939 6.5537 -1.2004 48 1 12.4101 6.9310 1.2163 49 1 10.2646 6.4006 2.3017 50 1 6.9360 7.6568 1.9336 51 1 6.1227 10.8539 2.4281 52 1 4.8788 5.3280 0.0309 53 1 5.2799 5.4160 1.7724 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211713258.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:04 Heat of formation + Delta-G solvation = -5.629961 kcal Electronic energy + Delta-G solvation = -30594.610712 eV Core-core repulsion = 26658.664372 eV Total energy + Delta-G solvation = -3935.946340 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.46271 -40.25688 -38.84610 -37.93962 -35.85545 -34.17362 -33.87251 -32.66424 -31.73585 -30.40119 -29.14902 -28.54227 -27.87071 -25.85310 -24.90958 -23.73608 -23.45749 -22.50406 -21.67156 -21.06605 -20.19281 -19.26042 -18.27212 -17.81033 -17.21234 -16.81715 -16.69839 -16.49577 -16.10677 -15.97087 -15.72628 -15.41066 -15.13286 -14.95957 -14.77697 -14.50916 -14.27016 -14.20307 -14.06207 -13.77040 -13.61270 -13.45980 -13.14056 -13.05224 -12.95158 -12.80171 -12.75858 -12.63693 -12.54164 -12.36845 -12.14836 -11.98247 -11.95838 -11.82276 -11.74750 -11.57059 -11.45570 -11.03289 -10.79329 -9.77485 -9.67333 -9.53862 -9.33396 -8.98815 -7.92978 -5.22092 0.51024 0.57694 1.49289 1.51053 1.59200 1.59524 1.84847 2.56721 2.90039 2.94241 3.37545 3.42932 3.67608 3.76173 3.90825 3.96563 4.09528 4.12098 4.13553 4.21242 4.24788 4.27041 4.29881 4.33853 4.36961 4.47971 4.51917 4.54015 4.55368 4.67299 4.68476 4.69873 4.80221 4.83242 4.88504 4.89318 4.95177 5.07371 5.15578 5.21227 5.22548 5.24208 5.30390 5.30450 5.43108 5.55087 5.63894 5.67523 5.79172 5.90457 6.08286 6.19274 6.27291 6.50797 7.15522 7.35868 8.05471 8.30425 9.29780 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.007864 B = 0.003207 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3559.790650 B = 8728.655854 C =11505.788869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.054 3.946 4 N -0.543 5.543 5 C 0.021 3.979 6 C 0.045 3.955 7 C 0.527 3.473 8 O -0.564 6.564 9 N -0.613 5.613 10 C 0.129 3.871 11 C -0.063 4.063 12 H 0.087 0.913 13 C -0.070 4.070 14 C -0.126 4.126 15 C -0.126 4.126 16 C -0.131 4.131 17 C -0.126 4.126 18 C -0.127 4.127 19 C 0.182 3.818 20 H 0.066 0.934 21 N -0.716 5.716 22 C -0.236 4.236 23 H 0.078 0.922 24 C -0.066 4.066 25 N -0.963 5.963 26 Si 0.964 3.036 27 H -0.266 1.266 28 H -0.294 1.294 29 H -0.299 1.299 30 C 0.084 3.916 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.041 0.959 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.028 0.972 41 H 0.115 0.885 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.119 0.881 46 H 0.140 0.860 47 H 0.144 0.856 48 H 0.139 0.861 49 H 0.122 0.878 50 H 0.377 0.623 51 H 0.250 0.750 52 H 0.082 0.918 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.232 -15.345 -5.821 16.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.073 4.073 4 N -0.267 5.267 5 C -0.127 4.127 6 C -0.086 4.086 7 C 0.316 3.684 8 O -0.443 6.443 9 N -0.347 5.347 10 C 0.006 3.994 11 C -0.082 4.082 12 H 0.106 0.894 13 C -0.070 4.070 14 C -0.144 4.144 15 C -0.144 4.144 16 C -0.149 4.149 17 C -0.144 4.144 18 C -0.146 4.146 19 C 0.071 3.929 20 H 0.084 0.916 21 N -0.354 5.354 22 C -0.368 4.368 23 H 0.096 0.904 24 C -0.259 4.259 25 N -0.614 5.614 26 Si 0.794 3.206 27 H -0.190 1.190 28 H -0.222 1.222 29 H -0.227 1.227 30 C -0.042 4.042 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.046 0.954 41 H 0.133 0.867 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.137 0.863 46 H 0.158 0.842 47 H 0.162 0.838 48 H 0.157 0.843 49 H 0.140 0.860 50 H 0.210 0.790 51 H 0.059 0.941 52 H 0.100 0.900 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.910 -16.181 -5.624 17.155 hybrid contribution -0.498 1.735 -0.405 1.849 sum -1.408 -14.447 -6.029 15.717 Atomic orbital electron populations 1.21710 0.94298 1.02344 1.02155 1.21502 0.96308 0.95393 1.02325 1.22287 0.85079 0.98429 1.01501 1.61645 1.08638 1.19956 1.36482 1.22517 1.01358 1.00216 0.88574 1.21944 0.90973 0.91792 1.03868 1.20626 0.89857 0.82015 0.75899 1.90630 1.72251 1.28732 1.52639 1.48527 1.08974 1.07123 1.70090 1.21850 0.80981 0.95264 1.01346 1.21404 0.92770 0.93743 1.00327 0.89448 1.19609 0.94163 0.98992 0.94234 1.21090 0.98174 1.00955 0.94187 1.21384 0.93066 0.99124 1.00790 1.21437 0.99817 0.99483 0.94153 1.21400 0.97546 0.99754 0.95695 1.21245 0.93532 0.99447 1.00330 1.21454 0.90770 0.84134 0.96518 0.91620 1.42335 1.71951 1.06325 1.14791 1.19579 1.30299 0.90677 0.96251 0.90428 1.25428 1.03162 0.99814 0.97465 1.69806 1.54448 1.21832 1.15268 0.85220 0.77313 0.79547 0.78551 1.18989 1.22170 1.22674 1.23232 0.98957 0.79994 1.02012 0.91834 0.92382 0.92408 0.91899 0.92072 0.90187 0.94052 0.91855 0.90129 0.95369 0.86716 0.90662 0.91339 0.91482 0.86290 0.84212 0.83801 0.84291 0.85972 0.79035 0.94105 0.90013 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 71.98 0.71 -1.13 16 2 C -0.12 -1.88 5.87 30.59 0.18 -1.70 16 3 C 0.05 0.98 4.96 86.30 0.43 1.41 16 4 N -0.54 -12.87 4.50 -927.05 -4.17 -17.04 16 5 C 0.02 0.49 9.01 127.69 1.15 1.64 16 6 C 0.04 1.08 4.45 85.56 0.38 1.46 16 7 C 0.53 15.96 7.57 87.66 0.66 16.62 16 8 O -0.56 -20.45 14.64 -3.04 -0.04 -20.50 16 9 N -0.61 -18.16 3.33 -811.87 -2.70 -20.86 16 10 C 0.13 3.79 6.37 86.73 0.55 4.34 16 11 C -0.06 -1.95 2.82 -10.35 -0.03 -1.98 16 12 H 0.09 2.81 7.81 -2.39 -0.02 2.79 16 13 C -0.07 -2.15 4.93 -19.86 -0.10 -2.25 16 14 C -0.13 -3.65 8.12 22.27 0.18 -3.47 16 15 C -0.13 -3.18 10.05 22.27 0.22 -2.96 16 16 C -0.13 -3.14 10.05 22.27 0.22 -2.91 16 17 C -0.13 -3.26 10.05 22.27 0.22 -3.03 16 18 C -0.13 -3.79 9.68 22.27 0.22 -3.57 16 19 C 0.18 6.45 3.09 46.37 0.14 6.59 16 20 H 0.07 2.41 6.82 -2.38 -0.02 2.40 16 21 N -0.72 -32.43 5.24 -316.40 -1.66 -34.09 16 22 C -0.24 -12.00 9.96 84.03 0.84 -11.16 16 23 H 0.08 3.79 7.83 -2.91 -0.02 3.76 16 24 C -0.07 -3.54 5.50 84.86 0.47 -3.07 16 25 N -0.96 -55.71 13.06 21.65 0.28 -55.43 16 26 Si 0.96 43.82 29.55 68.60 2.03 45.85 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 28 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 29 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 30 C 0.08 2.59 6.38 86.85 0.55 3.14 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.06 0.99 6.47 -2.39 -0.02 0.98 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 1.37 7.93 -2.39 -0.02 1.35 16 37 H 0.04 0.70 8.12 -2.38 -0.02 0.68 16 38 H 0.06 1.79 5.88 -2.39 -0.01 1.77 16 39 H 0.08 1.60 6.30 -2.38 -0.02 1.59 16 40 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.11 2.50 7.93 -2.38 -0.02 2.48 16 42 H 0.08 1.64 7.82 -2.39 -0.02 1.63 16 43 H 0.07 2.03 6.99 -2.39 -0.02 2.01 16 44 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.12 3.31 7.30 -2.91 -0.02 3.29 16 46 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 47 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 48 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 49 H 0.12 3.45 7.98 -2.91 -0.02 3.42 16 50 H 0.38 18.63 7.77 -92.71 -0.72 17.91 16 51 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 52 H 0.08 2.35 7.48 -2.38 -0.02 2.33 16 53 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -63.80 420.32 0.91 -62.89 By element: Atomic # 1 Polarization: 41.03 SS G_CDS: 0.17 Total: 41.20 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 7.01 Total: -2.03 kcal Atomic # 7 Polarization: -119.16 SS G_CDS: -8.25 Total: -127.41 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.04 Total: -20.50 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -63.80 0.91 -62.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211713258.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.258 kcal (2) G-P(sol) polarization free energy of solvation -63.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds