Wall clock time and date at job start Wed Apr 1 2020 03:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46787 * 2 1 4 4 C 1.53002 * 109.46875 * 185.29231 * 3 2 1 5 5 H 1.09001 * 109.46970 * 55.06858 * 4 3 2 6 6 C 1.50702 * 109.47107 * 175.06724 * 4 3 2 7 7 O 1.21279 * 120.00157 * 140.33223 * 6 4 3 8 8 N 1.34778 * 120.00054 * 320.32174 * 6 4 3 9 9 C 1.46498 * 120.00040 * 175.23108 * 8 6 4 10 10 C 1.53003 * 109.46933 * 180.02562 * 9 8 6 11 11 C 1.53036 * 109.46299 * 295.03223 * 10 9 8 12 12 C 1.53191 * 109.31339 * 178.60503 * 11 10 9 13 13 N 1.46927 * 108.76902 * 54.64701 * 12 11 10 14 14 C 1.36940 * 120.62586 * 126.36379 * 13 12 11 15 15 H 1.08004 * 119.99925 * 208.68492 * 14 13 12 16 16 C 1.38810 * 120.00115 * 28.68621 * 14 13 12 17 17 N 1.31614 * 120.00094 * 19.40125 * 16 14 13 18 18 Si 1.86804 * 119.99734 * 199.40689 * 16 14 13 19 19 H 1.48500 * 109.47024 * 94.98061 * 18 16 14 20 20 H 1.48499 * 109.47056 * 214.97839 * 18 16 14 21 21 H 1.48498 * 109.47054 * 334.97954 * 18 16 14 22 22 C 1.46920 * 118.73946 * 306.39094 * 13 12 11 23 23 C 1.53038 * 109.45832 * 174.97430 * 10 9 8 24 24 C 1.50698 * 109.47282 * 295.06868 * 4 3 2 25 25 C 1.38232 * 119.61824 * 274.99693 * 24 4 3 26 26 C 1.38619 * 119.16120 * 179.97438 * 25 24 4 27 27 C 1.38674 * 118.42629 * 359.97438 * 26 25 24 28 28 C 1.38186 * 119.15721 * 0.27786 * 27 26 25 29 29 N 1.31850 * 119.61928 * 94.97974 * 24 4 3 30 30 H 1.09003 * 109.46822 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47062 * 299.99981 * 1 2 3 32 32 H 1.08997 * 109.47297 * 59.99804 * 1 2 3 33 33 H 1.09003 * 109.47272 * 240.00373 * 2 1 3 34 34 H 1.08997 * 109.47297 * 120.00196 * 2 1 3 35 35 H 1.09003 * 109.47130 * 65.29628 * 3 2 1 36 36 H 1.09000 * 109.47334 * 305.29226 * 3 2 1 37 37 H 0.97004 * 119.99509 * 355.24146 * 8 6 4 38 38 H 1.08998 * 109.47179 * 300.00278 * 9 8 6 39 39 H 1.08998 * 109.46911 * 60.00872 * 9 8 6 40 40 H 1.09007 * 109.46008 * 55.00554 * 10 9 8 41 41 H 1.09003 * 109.49456 * 298.56386 * 11 10 9 42 42 H 1.08996 * 109.49674 * 58.65988 * 11 10 9 43 43 H 1.09003 * 109.59487 * 294.86446 * 12 11 10 44 44 H 1.08998 * 109.70616 * 174.50310 * 12 11 10 45 45 H 0.96998 * 120.00007 * 179.97438 * 17 16 14 46 46 H 1.08997 * 109.58608 * 293.81273 * 22 13 12 47 47 H 1.09000 * 109.70170 * 173.46277 * 22 13 12 48 48 H 1.09006 * 109.49945 * 301.33976 * 23 10 9 49 49 H 1.08996 * 109.49886 * 61.40358 * 23 10 9 50 50 H 1.08004 * 120.41528 * 0.02562 * 25 24 4 51 51 H 1.08003 * 120.78813 * 180.02562 * 26 25 24 52 52 H 1.07997 * 120.42652 * 180.02562 * 27 26 25 53 53 H 1.07993 * 119.61682 * 179.69798 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5642 1.4446 -0.1331 5 1 3.8520 0.8828 -1.0217 6 6 4.0558 2.8639 -0.2549 7 8 5.0729 3.2041 0.3115 8 7 3.3655 3.7552 -0.9934 9 6 3.7841 5.1587 -1.0278 10 6 2.8382 5.9510 -1.9325 11 6 2.9732 5.4521 -3.3729 12 6 1.9998 6.2235 -4.2696 13 7 2.2443 7.6629 -4.1044 14 6 2.4835 8.4593 -5.1924 15 1 3.0918 9.3457 -5.0895 16 6 1.9440 8.1273 -6.4276 17 7 0.9208 7.3025 -6.4986 18 14 2.6703 8.8513 -7.9889 19 1 3.6582 7.9020 -8.5617 20 1 1.5856 9.0914 -8.9744 21 1 3.3444 10.1359 -7.6719 22 6 2.2279 8.2312 -2.7497 23 6 3.1986 7.4371 -1.8700 24 6 4.1757 0.8040 1.0862 25 6 4.4030 1.5660 2.2169 26 6 4.9655 0.9670 3.3333 27 6 5.2794 -0.3823 3.2708 28 6 5.0283 -1.0786 2.1039 29 7 4.4876 -0.4768 1.0622 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.7561 1.9283 0.9336 36 1 1.6013 1.9830 -0.8388 37 1 2.5913 3.4674 -1.5021 38 1 3.7532 5.5719 -0.0196 39 1 4.8002 5.2253 -1.4168 40 1 1.8112 5.8119 -1.5947 41 1 3.9938 5.6139 -3.7199 42 1 2.7392 4.3883 -3.4128 43 1 0.9746 5.9916 -3.9809 44 1 2.1584 5.9431 -5.3109 45 1 0.5436 7.0708 -7.3617 46 1 1.2214 8.1631 -2.3370 47 1 2.5381 9.2755 -2.7855 48 1 3.1251 7.7863 -0.8400 49 1 4.2172 7.5799 -2.2306 50 1 4.1447 2.6146 2.2307 51 1 5.1540 1.5374 4.2308 52 1 5.7185 -0.8817 4.1218 53 1 5.2744 -2.1285 2.0454 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224231888.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:44 Heat of formation + Delta-G solvation = -21.133993 kcal Electronic energy + Delta-G solvation = -30524.519298 eV Core-core repulsion = 26587.900652 eV Total energy + Delta-G solvation = -3936.618646 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.82304 -40.44011 -39.31383 -36.81113 -36.41387 -34.49643 -33.40729 -33.07630 -32.40102 -31.51911 -30.26276 -28.26396 -26.18436 -25.55096 -24.48833 -23.89704 -23.51271 -22.48225 -22.14105 -21.13593 -20.56523 -18.73228 -18.22650 -17.98025 -17.11672 -17.01212 -16.79455 -16.31992 -16.23596 -15.83539 -15.66122 -15.32382 -15.25758 -14.96835 -14.71640 -14.70148 -14.30612 -14.11348 -13.95294 -13.82080 -13.78208 -13.45680 -13.33222 -13.05912 -12.87477 -12.84414 -12.57952 -12.40514 -12.27560 -12.15843 -12.01311 -11.95209 -11.83111 -11.59712 -11.52618 -11.22259 -11.10871 -10.87617 -10.62979 -10.52860 -10.38355 -10.06608 -9.85163 -8.65883 -7.87952 -5.31383 0.19475 0.39829 1.45418 1.47653 1.53924 1.56118 2.11235 2.51288 2.89353 3.25360 3.25921 3.48626 3.72510 3.83788 3.90794 3.93364 3.97955 4.04279 4.07698 4.12483 4.23398 4.25907 4.30800 4.46986 4.54738 4.56743 4.65693 4.68759 4.70144 4.75591 4.80997 4.81337 4.87134 4.93879 4.95402 5.01700 5.05804 5.18869 5.23986 5.25734 5.26808 5.30966 5.31929 5.35382 5.42335 5.43347 5.48920 5.55973 5.67810 5.79519 5.81199 6.40376 6.50348 7.04034 7.16581 7.17599 7.88980 8.39857 9.18154 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.017521 B = 0.002170 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.694872 B =12900.540986 C =13594.509724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.104 4.104 4 C -0.054 4.054 5 H 0.120 0.880 6 C 0.520 3.480 7 O -0.572 6.572 8 N -0.712 5.712 9 C 0.136 3.864 10 C -0.078 4.078 11 C -0.121 4.121 12 C 0.177 3.823 13 N -0.612 5.612 14 C -0.263 4.263 15 H 0.062 0.938 16 C -0.048 4.048 17 N -0.931 5.931 18 Si 0.961 3.039 19 H -0.288 1.288 20 H -0.294 1.294 21 H -0.269 1.269 22 C 0.141 3.859 23 C -0.115 4.115 24 C 0.131 3.869 25 C -0.155 4.155 26 C -0.086 4.086 27 C -0.170 4.170 28 C 0.083 3.917 29 N -0.498 5.498 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.412 0.588 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.080 0.920 41 H 0.043 0.957 42 H 0.071 0.929 43 H 0.002 0.998 44 H 0.045 0.955 45 H 0.250 0.750 46 H 0.017 0.983 47 H 0.050 0.950 48 H 0.085 0.915 49 H 0.053 0.947 50 H 0.124 0.876 51 H 0.153 0.847 52 H 0.165 0.835 53 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.340 -17.234 20.632 27.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.142 4.142 4 C -0.075 4.075 5 H 0.138 0.862 6 C 0.307 3.693 7 O -0.452 6.452 8 N -0.364 5.364 9 C 0.012 3.988 10 C -0.097 4.097 11 C -0.160 4.160 12 C 0.052 3.948 13 N -0.336 5.336 14 C -0.393 4.393 15 H 0.080 0.920 16 C -0.244 4.244 17 N -0.577 5.577 18 Si 0.789 3.211 19 H -0.215 1.215 20 H -0.221 1.221 21 H -0.194 1.194 22 C 0.015 3.985 23 C -0.154 4.154 24 C -0.007 4.007 25 C -0.175 4.175 26 C -0.112 4.112 27 C -0.190 4.190 28 C -0.074 4.074 29 N -0.207 5.207 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.250 0.750 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.089 0.911 43 H 0.020 0.980 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.035 0.965 47 H 0.069 0.931 48 H 0.103 0.897 49 H 0.071 0.929 50 H 0.142 0.858 51 H 0.171 0.829 52 H 0.182 0.818 53 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 3.796 -17.471 20.149 26.938 hybrid contribution 0.078 0.934 -0.773 1.215 sum 3.874 -16.536 19.376 25.766 Atomic orbital electron populations 1.21774 0.94915 1.02051 1.02181 1.21408 0.96181 0.95279 1.02173 1.21664 0.89822 0.98970 1.03707 1.20201 0.97851 0.91586 0.97906 0.86195 1.20579 0.83169 0.87524 0.78058 1.90703 1.25646 1.80563 1.48300 1.46012 1.32703 1.08860 1.48852 1.21326 0.97782 0.79917 0.99752 1.21163 0.99387 0.95022 0.94149 1.22037 0.99547 0.99091 0.95310 1.20564 0.93881 0.82726 0.97678 1.44337 1.83364 1.04040 1.01828 1.19474 1.23911 1.07541 0.88393 0.92014 1.25734 0.96450 1.00876 1.01361 1.70186 1.23201 1.40247 1.24020 0.85350 0.77420 0.78392 0.79911 1.21451 1.22112 1.19393 1.21045 0.96210 0.96185 0.85021 1.21853 0.99384 0.94236 0.99965 1.20509 0.96044 0.90059 0.94042 1.22026 1.00322 1.00939 0.94198 1.21915 0.95132 0.95601 0.98572 1.22471 1.01098 0.94915 1.00476 1.23212 0.94305 1.01388 0.88516 1.67389 1.11897 1.10382 1.31031 0.92365 0.92734 0.92055 0.91518 0.93054 0.91129 0.89165 0.74994 0.90898 0.92875 0.90163 0.93798 0.91052 0.97963 0.93687 0.94126 0.96470 0.93103 0.89679 0.92859 0.85826 0.82905 0.81783 0.80290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.11 -1.74 5.60 30.60 0.17 -1.57 16 3 C -0.10 -1.61 4.45 30.60 0.14 -1.47 16 4 C -0.05 -1.08 2.61 -12.29 -0.03 -1.11 16 5 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 6 C 0.52 12.65 6.67 87.66 0.58 13.23 16 7 O -0.57 -18.06 14.30 -3.03 -0.04 -18.10 16 8 N -0.71 -15.42 5.04 -463.06 -2.33 -17.75 16 9 C 0.14 3.35 5.07 86.38 0.44 3.78 16 10 C -0.08 -2.19 2.19 -10.77 -0.02 -2.21 16 11 C -0.12 -4.11 5.25 30.67 0.16 -3.95 16 12 C 0.18 8.14 5.32 86.36 0.46 8.60 16 13 N -0.61 -30.06 2.99 -699.11 -2.09 -32.15 16 14 C -0.26 -14.43 9.56 84.03 0.80 -13.63 16 15 H 0.06 3.35 7.90 -2.91 -0.02 3.32 16 16 C -0.05 -2.70 4.84 84.86 0.41 -2.29 16 17 N -0.93 -54.60 11.40 21.65 0.25 -54.36 16 18 Si 0.96 44.94 29.60 68.60 2.03 46.97 16 19 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 C 0.14 5.57 6.51 86.36 0.56 6.14 16 23 C -0.11 -3.51 5.36 30.67 0.16 -3.35 16 24 C 0.13 2.94 4.78 42.55 0.20 3.14 16 25 C -0.15 -3.39 8.31 22.36 0.19 -3.21 16 26 C -0.09 -1.46 10.17 22.46 0.23 -1.23 16 27 C -0.17 -2.38 10.11 22.36 0.23 -2.15 16 28 C 0.08 1.36 11.18 84.67 0.95 2.31 16 29 N -0.50 -10.83 9.77 -183.89 -1.80 -12.62 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 0.92 7.20 -2.39 -0.02 0.90 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.09 1.16 6.61 -2.39 -0.02 1.14 16 37 H 0.41 7.37 6.03 -92.71 -0.56 6.81 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 40 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 41 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.07 2.05 7.15 -2.39 -0.02 2.03 16 43 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 44 H 0.04 2.39 6.18 -2.39 -0.01 2.37 16 45 H 0.25 14.19 8.31 -92.71 -0.77 13.41 16 46 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.05 2.01 7.94 -2.39 -0.02 1.99 16 48 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 49 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.12 2.89 6.60 -2.91 -0.02 2.87 16 51 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 52 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 53 H 0.18 1.83 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -70.41 414.39 2.68 -67.73 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.32 Total: 20.58 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 6.34 Total: -0.30 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -5.97 Total: -116.88 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.04 Total: -18.10 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -70.41 2.68 -67.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224231888.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.592 kcal (2) G-P(sol) polarization free energy of solvation -70.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds