Wall clock time and date at job start Wed Apr 1 2020 03:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47214 * 2 1 4 4 C 1.53001 * 109.47361 * 120.00577 * 2 1 3 5 5 H 1.09004 * 109.46848 * 303.84352 * 4 2 1 6 6 C 1.50695 * 109.47001 * 183.84433 * 4 2 1 7 7 O 1.21281 * 120.00396 * 324.78159 * 6 4 2 8 8 N 1.34778 * 119.99763 * 144.78257 * 6 4 2 9 9 C 1.46501 * 119.99909 * 174.53454 * 8 6 4 10 10 C 1.53004 * 109.47067 * 180.27765 * 9 8 6 11 11 C 1.53039 * 109.45728 * 295.02262 * 10 9 8 12 12 C 1.53196 * 109.31207 * 178.60028 * 11 10 9 13 13 N 1.46929 * 108.76205 * 54.65708 * 12 11 10 14 14 C 1.36939 * 120.62514 * 126.36158 * 13 12 11 15 15 H 1.08001 * 120.00503 * 323.96491 * 14 13 12 16 16 C 1.38816 * 119.99939 * 143.96559 * 14 13 12 17 17 N 1.31622 * 119.99661 * 358.94585 * 16 14 13 18 18 Si 1.86797 * 120.00161 * 178.94251 * 16 14 13 19 19 H 1.48500 * 109.46837 * 60.00501 * 18 16 14 20 20 H 1.48499 * 109.46834 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47338 * 300.00004 * 18 16 14 22 22 C 1.46924 * 118.74330 * 306.38579 * 13 12 11 23 23 C 1.53041 * 109.45777 * 174.97317 * 10 9 8 24 24 C 1.50701 * 109.47322 * 63.84423 * 4 2 1 25 25 C 1.38654 * 120.78762 * 59.71901 * 24 4 2 26 26 C 1.38206 * 119.16044 * 179.75947 * 25 24 4 27 27 N 1.31873 * 120.76170 * 0.52635 * 26 25 24 28 28 C 1.31868 * 121.72641 * 359.74845 * 27 26 25 29 29 C 1.38206 * 120.76649 * 359.97438 * 28 27 26 30 30 H 1.09008 * 109.47138 * 299.99380 * 1 2 3 31 31 H 1.08994 * 109.47754 * 59.99584 * 1 2 3 32 32 H 1.09000 * 109.47496 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47011 * 240.00556 * 2 1 3 34 34 H 1.08999 * 109.47327 * 185.22571 * 3 2 1 35 35 H 1.09001 * 109.47358 * 305.23299 * 3 2 1 36 36 H 1.09006 * 109.46560 * 65.22677 * 3 2 1 37 37 H 0.96993 * 120.00161 * 354.81056 * 8 6 4 38 38 H 1.09002 * 109.47279 * 300.27448 * 9 8 6 39 39 H 1.09003 * 109.47325 * 60.27924 * 9 8 6 40 40 H 1.08999 * 109.46166 * 55.00018 * 10 9 8 41 41 H 1.08993 * 109.50554 * 298.56722 * 11 10 9 42 42 H 1.09006 * 109.49383 * 58.67033 * 11 10 9 43 43 H 1.09003 * 109.59635 * 294.87648 * 12 11 10 44 44 H 1.08998 * 109.70363 * 174.50853 * 12 11 10 45 45 H 0.96997 * 119.99927 * 179.97438 * 17 16 14 46 46 H 1.09002 * 109.58663 * 293.82051 * 22 13 12 47 47 H 1.08995 * 109.70369 * 173.46038 * 22 13 12 48 48 H 1.08999 * 109.50113 * 301.33844 * 23 10 9 49 49 H 1.09004 * 109.50042 * 61.43592 * 23 10 9 50 50 H 1.07997 * 120.41884 * 0.02562 * 25 24 4 51 51 H 1.07992 * 119.61748 * 180.25096 * 26 25 24 52 52 H 1.08006 * 119.61649 * 179.97438 * 28 27 26 53 53 H 1.07996 * 120.41949 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6215 -0.2489 2.1379 6 6 3.5439 -0.6394 1.2976 7 8 4.1868 -0.6773 0.2699 8 7 4.1746 -0.5238 2.4831 9 6 5.6379 -0.5646 2.5414 10 6 6.0947 -0.4198 3.9945 11 6 5.7065 0.9660 4.5152 12 6 6.1341 1.0946 5.9806 13 7 7.5683 0.7918 6.0827 14 6 8.4269 1.6752 6.6807 15 1 8.2747 2.7382 6.5658 16 6 9.4931 1.2043 7.4347 17 7 9.6667 -0.0909 7.5920 18 14 10.6815 2.4088 8.2260 19 1 9.9412 3.2910 9.1635 20 1 11.7235 1.6583 8.9718 21 1 11.3243 3.2345 7.1723 22 6 8.0636 -0.4765 5.5307 23 6 7.6140 -0.5876 4.0704 24 6 1.6170 -2.1670 1.2024 25 6 2.0163 -2.9900 0.1603 26 6 1.6129 -4.3118 0.1536 27 7 0.8494 -4.7889 1.1172 28 6 0.4463 -4.0341 2.1205 29 6 0.8145 -2.7042 2.1972 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8932 -0.5137 -0.8900 34 1 3.1259 1.4439 -0.0936 35 1 1.6021 1.9827 -0.8394 36 1 1.7550 1.9285 0.9332 37 1 3.6596 -0.4178 3.2982 38 1 5.9911 -1.5156 2.1426 39 1 6.0481 0.2529 1.9484 40 1 5.6139 -1.1847 4.6042 41 1 6.2068 1.7311 3.9216 42 1 4.6267 1.0939 4.4390 43 1 5.5677 0.3903 6.5899 44 1 5.9495 2.1106 6.3295 45 1 10.4119 -0.4200 8.1185 46 1 7.6545 -1.3088 6.1033 47 1 9.1522 -0.4987 5.5805 48 1 7.8921 -1.5656 3.6775 49 1 8.0961 0.1923 3.4810 50 1 2.6382 -2.6040 -0.6338 51 1 1.9230 -4.9604 -0.6523 52 1 -0.1790 -4.4601 2.8913 53 1 0.4815 -2.0913 3.0217 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224241334.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:38 Heat of formation + Delta-G solvation = -25.384882 kcal Electronic energy + Delta-G solvation = -30728.729530 eV Core-core repulsion = 26791.926552 eV Total energy + Delta-G solvation = -3936.802978 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.81493 -40.52941 -39.39474 -37.24157 -36.29854 -34.51128 -33.54423 -32.52219 -32.12282 -31.41440 -29.48670 -28.00426 -27.93392 -25.70933 -24.49282 -23.87648 -23.52520 -22.73118 -21.95121 -20.89416 -20.45957 -18.76750 -18.28269 -17.99934 -17.05960 -16.89084 -16.78030 -16.49605 -16.26464 -15.73885 -15.45321 -15.28294 -15.18211 -15.07889 -14.80872 -14.58683 -14.50386 -14.25109 -14.01861 -13.86259 -13.54109 -13.36843 -13.20449 -12.97804 -12.94796 -12.72954 -12.62750 -12.60813 -12.33254 -12.16917 -12.01465 -11.93320 -11.85962 -11.62985 -11.60363 -11.29279 -11.11617 -11.08144 -10.54147 -10.43826 -10.33407 -10.07956 -10.06868 -8.53232 -7.86563 -5.42991 0.20550 0.21100 1.46482 1.47912 1.54608 1.59628 2.17279 2.49890 2.85763 3.29196 3.47408 3.60937 3.61221 3.73664 3.73950 3.84241 3.94519 3.99373 4.09669 4.09962 4.18789 4.24605 4.37065 4.47421 4.52313 4.55030 4.65015 4.69144 4.72224 4.73966 4.79866 4.81309 4.90846 4.95189 4.96657 4.98799 5.03456 5.05261 5.14313 5.23273 5.29097 5.29964 5.31283 5.35614 5.41021 5.45282 5.48144 5.58699 5.66181 5.77324 5.82715 6.45660 6.54635 7.03293 7.18962 7.22238 7.87792 8.41472 9.17976 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.017405 B = 0.002216 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.312636 B =12634.697688 C =13359.785743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.072 4.072 3 C -0.151 4.151 4 C -0.057 4.057 5 H 0.130 0.870 6 C 0.521 3.479 7 O -0.573 6.573 8 N -0.714 5.714 9 C 0.138 3.862 10 C -0.077 4.077 11 C -0.113 4.113 12 C 0.140 3.860 13 N -0.613 5.613 14 C -0.267 4.267 15 H 0.062 0.938 16 C -0.046 4.046 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.275 1.275 20 H -0.294 1.294 21 H -0.278 1.278 22 C 0.179 3.821 23 C -0.124 4.124 24 C -0.034 4.034 25 C -0.169 4.169 26 C 0.087 3.913 27 N -0.512 5.512 28 C 0.089 3.911 29 C -0.157 4.157 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.037 0.963 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.413 0.587 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.086 0.914 43 H 0.018 0.982 44 H 0.052 0.948 45 H 0.250 0.750 46 H -0.004 1.004 47 H 0.052 0.948 48 H 0.064 0.936 49 H 0.048 0.952 50 H 0.129 0.871 51 H 0.167 0.833 52 H 0.180 0.820 53 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.835 -2.504 -13.755 26.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.091 4.091 3 C -0.208 4.208 4 C -0.078 4.078 5 H 0.147 0.853 6 C 0.308 3.692 7 O -0.452 6.452 8 N -0.366 5.366 9 C 0.014 3.986 10 C -0.096 4.096 11 C -0.152 4.152 12 C 0.015 3.985 13 N -0.337 5.337 14 C -0.397 4.397 15 H 0.079 0.921 16 C -0.241 4.241 17 N -0.580 5.580 18 Si 0.795 3.205 19 H -0.200 1.200 20 H -0.220 1.220 21 H -0.203 1.203 22 C 0.054 3.946 23 C -0.164 4.164 24 C -0.042 4.042 25 C -0.189 4.189 26 C -0.069 4.069 27 N -0.221 5.221 28 C -0.067 4.067 29 C -0.176 4.176 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.250 0.750 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.036 0.964 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.014 0.986 47 H 0.071 0.929 48 H 0.083 0.917 49 H 0.066 0.934 50 H 0.147 0.853 51 H 0.184 0.816 52 H 0.197 0.803 53 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -22.493 -3.491 -14.404 26.937 hybrid contribution 1.463 1.187 0.884 2.081 sum -21.030 -2.303 -13.520 25.107 Atomic orbital electron populations 1.21798 0.92789 1.01923 1.03178 1.20945 0.96908 0.95833 0.95373 1.21888 1.00420 0.95435 1.03054 1.20477 0.90660 0.93272 1.03384 0.85256 1.20768 0.90452 0.74910 0.83065 1.90681 1.68752 1.51120 1.34623 1.46023 1.07449 1.73492 1.09638 1.21232 0.79881 1.01013 0.96487 1.21130 0.95857 0.98317 0.94272 1.21922 1.00788 0.95888 0.96588 1.21085 0.84303 0.98315 0.94773 1.44234 1.02855 1.19571 1.67080 1.19416 1.07555 0.89168 1.23571 0.92066 1.26060 1.02337 0.97330 0.98392 1.70093 1.31790 1.13075 1.43057 0.85352 0.78290 0.78330 0.78506 1.20024 1.21982 1.20339 1.20562 0.98426 0.86263 0.89374 1.22010 0.95340 1.00579 0.98437 1.19896 0.95751 0.94171 0.94415 1.22159 1.01376 0.95385 0.99961 1.22984 0.93488 0.93599 0.96788 1.67698 1.11530 1.39850 1.03069 1.23258 0.96916 0.90946 0.95602 1.22376 0.98424 0.97115 0.99692 0.90857 0.91735 0.93078 0.91761 0.94415 0.91379 0.91233 0.74972 0.92525 0.92612 0.90663 0.93294 0.89524 0.96384 0.92985 0.94067 0.98574 0.92921 0.91725 0.93366 0.85291 0.81618 0.80295 0.81395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.99 71.98 0.65 -0.83 16 2 C -0.07 -1.06 2.04 -10.80 -0.02 -1.08 16 3 C -0.15 -2.33 8.76 71.98 0.63 -1.70 16 4 C -0.06 -0.83 2.00 -12.29 -0.02 -0.86 16 5 H 0.13 1.12 7.89 -2.38 -0.02 1.10 16 6 C 0.52 11.35 5.51 87.66 0.48 11.83 16 7 O -0.57 -17.02 15.13 -3.03 -0.05 -17.06 16 8 N -0.71 -14.46 5.27 -463.05 -2.44 -16.90 16 9 C 0.14 3.55 5.07 86.38 0.44 3.99 16 10 C -0.08 -2.22 2.19 -10.77 -0.02 -2.25 16 11 C -0.11 -3.33 5.25 30.67 0.16 -3.17 16 12 C 0.14 5.45 6.52 86.36 0.56 6.01 16 13 N -0.61 -30.29 2.98 -699.07 -2.08 -32.38 16 14 C -0.27 -14.59 9.55 84.03 0.80 -13.79 16 15 H 0.06 3.27 7.83 -2.91 -0.02 3.25 16 16 C -0.05 -2.54 5.23 84.86 0.44 -2.09 16 17 N -0.93 -55.04 10.90 21.65 0.24 -54.80 16 18 Si 0.97 44.62 29.55 68.60 2.03 46.65 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 20 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 C 0.18 8.57 5.22 86.36 0.45 9.02 16 23 C -0.12 -4.53 5.36 30.67 0.16 -4.36 16 24 C -0.03 -0.53 3.71 -19.67 -0.07 -0.60 16 25 C -0.17 -3.18 8.90 22.36 0.20 -2.98 16 26 C 0.09 1.64 11.18 84.68 0.95 2.59 16 27 N -0.51 -10.22 10.36 -195.84 -2.03 -12.25 16 28 C 0.09 1.33 11.18 84.68 0.95 2.27 16 29 C -0.16 -1.93 9.76 22.36 0.22 -1.71 16 30 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.60 7.34 -2.39 -0.02 0.58 16 33 H 0.06 1.21 7.17 -2.39 -0.02 1.19 16 34 H 0.04 0.79 6.71 -2.39 -0.02 0.78 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.41 6.14 7.61 -92.71 -0.71 5.43 16 38 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.09 1.88 7.15 -2.38 -0.02 1.86 16 43 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 45 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 46 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 47 H 0.05 2.90 6.16 -2.39 -0.01 2.89 16 48 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 50 H 0.13 2.66 7.26 -2.91 -0.02 2.63 16 51 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 52 H 0.18 1.64 8.06 -2.91 -0.02 1.61 16 53 H 0.17 0.94 8.01 -2.91 -0.02 0.91 16 Total: -1.00 -71.08 415.12 2.79 -68.29 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.18 Total: 18.17 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 6.95 Total: 0.29 kcal Atomic # 7 Polarization: -110.02 SS G_CDS: -6.32 Total: -116.33 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.05 Total: -17.06 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -71.08 2.79 -68.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224241334.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.904 kcal (2) G-P(sol) polarization free energy of solvation -71.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds