Wall clock time and date at job start Wed Apr 1 2020 03:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46612 * 2 1 4 4 C 1.53001 * 109.46798 * 119.99812 * 2 1 3 5 5 H 1.08994 * 109.47338 * 303.75995 * 4 2 1 6 6 C 1.50700 * 109.46980 * 63.76351 * 4 2 1 7 7 O 1.21281 * 120.00565 * 34.54302 * 6 4 2 8 8 N 1.34779 * 119.99850 * 214.54922 * 6 4 2 9 9 C 1.46503 * 120.00054 * 174.74425 * 8 6 4 10 10 H 1.08998 * 109.46874 * 34.99948 * 9 8 6 11 11 C 1.52993 * 109.47094 * 274.99840 * 9 8 6 12 12 C 1.52994 * 109.47232 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47264 * 60.00070 * 12 11 9 14 14 C 1.53006 * 109.46776 * 300.00266 * 13 12 11 15 15 C 1.52994 * 109.47116 * 60.00039 * 14 13 12 16 16 H 1.09000 * 109.47826 * 59.99483 * 15 14 13 17 17 N 1.46503 * 109.47113 * 179.97438 * 15 14 13 18 18 C 1.36935 * 119.99939 * 275.00074 * 17 15 14 19 19 H 1.08003 * 120.00168 * 359.97438 * 18 17 15 20 20 C 1.38810 * 119.99779 * 179.97438 * 18 17 15 21 21 N 1.31614 * 120.00544 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99713 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47219 * 90.00021 * 22 20 18 24 24 H 1.48496 * 109.47204 * 209.99903 * 22 20 18 25 25 H 1.48502 * 109.47203 * 329.99967 * 22 20 18 26 26 C 1.50703 * 109.46749 * 183.75702 * 4 2 1 27 27 C 1.38670 * 120.41678 * 120.00348 * 26 4 2 28 28 C 1.38629 * 118.42184 * 180.02562 * 27 26 4 29 29 C 1.38223 * 119.15750 * 0.02562 * 28 27 26 30 30 N 1.31848 * 120.76905 * 359.97438 * 29 28 27 31 31 C 1.31890 * 121.72395 * 359.70949 * 30 29 28 32 32 H 1.09006 * 109.47390 * 54.85641 * 1 2 3 33 33 H 1.09002 * 109.46794 * 174.84707 * 1 2 3 34 34 H 1.09000 * 109.47369 * 294.84924 * 1 2 3 35 35 H 1.08999 * 109.46998 * 240.00153 * 2 1 3 36 36 H 1.09010 * 109.46659 * 179.97438 * 3 2 1 37 37 H 1.08995 * 109.47794 * 299.99643 * 3 2 1 38 38 H 1.08999 * 109.47314 * 60.00347 * 3 2 1 39 39 H 0.97002 * 119.99569 * 354.74573 * 8 6 4 40 40 H 1.08998 * 109.47349 * 299.99817 * 11 9 8 41 41 H 1.08997 * 109.47254 * 60.00273 * 11 9 8 42 42 H 1.08999 * 109.47524 * 180.02562 * 12 11 9 43 43 H 1.09003 * 109.47247 * 299.99995 * 12 11 9 44 44 H 1.09003 * 109.47050 * 59.99804 * 13 12 11 45 45 H 1.08994 * 109.47311 * 180.02562 * 13 12 11 46 46 H 1.09003 * 109.46954 * 299.99597 * 14 13 12 47 47 H 1.08997 * 109.46837 * 180.02562 * 14 13 12 48 48 H 0.97003 * 120.00193 * 94.99563 * 17 15 14 49 49 H 0.96995 * 120.00429 * 179.97438 * 21 20 18 50 50 H 1.08000 * 120.78992 * 0.02562 * 27 26 4 51 51 H 1.08002 * 120.42152 * 180.02562 * 28 27 26 52 52 H 1.08002 * 119.61410 * 180.02562 * 29 28 27 53 53 H 1.07995 * 119.62140 * 180.30705 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6227 -0.2478 2.1379 6 6 1.6152 -2.1664 1.2035 7 8 1.5558 -2.7478 0.1408 8 7 1.3011 -2.8129 2.3437 9 6 0.7783 -4.1804 2.2902 10 1 1.2511 -4.7182 1.4685 11 6 -0.7351 -4.1396 2.0692 12 6 -1.2809 -5.5677 2.0127 13 6 -0.9772 -6.2824 3.3310 14 6 0.5363 -6.3231 3.5521 15 6 1.0821 -4.8950 3.6086 16 1 0.6092 -4.3574 4.4305 17 7 2.5311 -4.9340 3.8208 18 6 3.0347 -5.0366 5.0901 19 1 2.3636 -5.0883 5.9348 20 6 4.4076 -5.0741 5.2911 21 7 5.2255 -5.0116 4.2618 22 14 5.0945 -5.2134 7.0227 23 1 5.2535 -6.6463 7.3784 24 1 6.4154 -4.5379 7.0870 25 1 4.1607 -4.5666 7.9792 26 6 3.5441 -0.6411 1.2967 27 6 4.1813 -0.0304 2.3663 28 6 5.5666 0.0207 2.3673 29 6 6.2618 -0.5346 1.3095 30 7 5.6225 -1.1076 0.3088 31 6 4.3059 -1.1798 0.2774 32 1 -0.3634 0.5916 -0.8404 33 1 -0.3633 -1.0235 -0.0923 34 1 -0.3634 0.4318 0.9325 35 1 1.8933 -0.5138 -0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9564 -0.8899 38 1 1.6766 1.9563 0.8900 39 1 1.4211 -2.3726 3.1997 40 1 -1.2079 -3.6018 2.8909 41 1 -0.9515 -3.6309 1.1298 42 1 -2.3590 -5.5387 1.8548 43 1 -0.8081 -6.1052 1.1907 44 1 -1.4500 -5.7449 4.1530 45 1 -1.3657 -7.2999 3.2906 46 1 1.0091 -6.8606 2.7301 47 1 0.7527 -6.8326 4.4910 48 1 3.1339 -4.8872 3.0622 49 1 6.1848 -5.0374 4.4023 50 1 3.6118 0.3955 3.1791 51 1 6.0960 0.4883 3.1843 52 1 7.3412 -0.4993 1.3030 53 1 3.8175 -1.6613 -0.5567 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229335655.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:50 Heat of formation + Delta-G solvation = -39.805584 kcal Electronic energy + Delta-G solvation = -32200.563575 eV Core-core repulsion = 28263.135268 eV Total energy + Delta-G solvation = -3937.428307 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.83682 -40.67248 -39.33835 -36.97777 -35.80679 -35.08321 -33.50290 -32.99045 -32.45330 -30.75903 -29.54108 -28.20821 -27.84839 -25.62694 -24.61418 -23.97032 -23.24192 -22.52436 -21.70321 -21.08072 -20.37467 -19.15074 -18.26662 -18.11596 -17.39038 -16.99384 -16.70483 -16.60414 -15.87499 -15.72937 -15.42798 -15.30683 -15.14607 -14.88394 -14.62186 -14.47346 -14.30856 -14.05850 -13.97642 -13.75541 -13.61204 -13.45169 -13.34025 -13.01121 -12.93022 -12.81465 -12.79154 -12.24741 -12.16140 -12.09969 -12.03034 -11.99957 -11.83574 -11.64216 -11.59164 -11.43545 -11.11045 -11.02442 -10.85485 -10.56789 -10.39934 -9.91795 -9.81729 -8.98742 -7.89880 -5.19337 0.13449 0.36704 1.46573 1.48356 1.56072 1.69470 2.27341 2.56585 2.86575 3.42991 3.46994 3.65677 3.70379 3.71076 3.82149 3.85764 4.01145 4.06356 4.10484 4.16986 4.23295 4.26721 4.33395 4.40813 4.44904 4.51289 4.52700 4.59897 4.66533 4.70359 4.72530 4.82924 4.84657 4.95689 5.00518 5.01420 5.03325 5.17749 5.18949 5.23962 5.24504 5.26353 5.29787 5.31452 5.41506 5.46170 5.47409 5.53327 5.58633 5.71312 5.78222 6.28041 6.64874 7.03026 7.32483 7.35050 8.09250 8.33696 9.32496 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.007582 B = 0.005157 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3692.086357 B = 5428.013506 C = 8367.529936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 C -0.137 4.137 4 C -0.047 4.047 5 H 0.124 0.876 6 C 0.522 3.478 7 O -0.578 6.578 8 N -0.703 5.703 9 C 0.148 3.852 10 H 0.046 0.954 11 C -0.112 4.112 12 C -0.111 4.111 13 C -0.109 4.109 14 C -0.129 4.129 15 C 0.173 3.827 16 H 0.060 0.940 17 N -0.730 5.730 18 C -0.230 4.230 19 H 0.079 0.921 20 C -0.071 4.071 21 N -0.967 5.967 22 Si 0.965 3.035 23 H -0.295 1.295 24 H -0.301 1.301 25 H -0.264 1.264 26 C -0.122 4.122 27 C -0.067 4.067 28 C -0.167 4.167 29 C 0.079 3.921 30 N -0.515 5.515 31 C 0.092 3.908 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.041 0.959 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.407 0.593 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.049 0.951 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.036 0.964 47 H 0.048 0.952 48 H 0.366 0.634 49 H 0.246 0.754 50 H 0.165 0.835 51 H 0.163 0.837 52 H 0.172 0.828 53 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.372 13.822 -3.295 18.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.092 4.092 3 C -0.194 4.194 4 C -0.069 4.069 5 H 0.142 0.858 6 C 0.309 3.691 7 O -0.458 6.458 8 N -0.352 5.352 9 C 0.042 3.958 10 H 0.065 0.935 11 C -0.151 4.151 12 C -0.149 4.149 13 C -0.147 4.147 14 C -0.170 4.170 15 C 0.064 3.936 16 H 0.078 0.922 17 N -0.369 5.369 18 C -0.362 4.362 19 H 0.097 0.903 20 C -0.263 4.263 21 N -0.618 5.618 22 Si 0.795 3.205 23 H -0.223 1.223 24 H -0.228 1.228 25 H -0.189 1.189 26 C -0.124 4.124 27 C -0.093 4.093 28 C -0.186 4.186 29 C -0.078 4.078 30 N -0.224 5.224 31 C -0.064 4.064 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.242 0.758 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.107 0.893 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.055 0.945 47 H 0.067 0.933 48 H 0.197 0.803 49 H 0.054 0.946 50 H 0.183 0.817 51 H 0.181 0.819 52 H 0.189 0.811 53 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.943 13.057 -4.527 18.265 hybrid contribution 1.129 -0.326 1.377 1.810 sum -10.814 12.730 -3.150 16.998 Atomic orbital electron populations 1.21820 0.93540 1.01421 1.03223 1.20955 0.96811 0.96395 0.95024 1.21780 1.00310 0.94166 1.03188 1.20367 0.91288 0.92013 1.03241 0.85816 1.20776 0.75528 0.89223 0.83535 1.90641 1.54752 1.69294 1.31073 1.45942 1.64854 1.15433 1.08970 1.21123 0.94746 0.82240 0.97661 0.93546 1.21787 0.92862 0.98260 1.02181 1.21480 1.01547 0.94447 0.97439 1.21510 0.94156 1.01116 0.97906 1.22102 0.96389 0.98102 1.00385 1.20667 0.84256 0.94302 0.94375 0.92208 1.42577 1.01301 1.88043 1.04981 1.19558 0.90401 1.40177 0.86038 0.90289 1.25450 0.96651 1.04101 1.00123 1.69859 1.01902 1.59580 1.30462 0.85266 0.77460 0.77080 0.80703 1.22266 1.22769 1.18873 1.20404 0.95382 1.00426 0.96201 1.21861 0.95093 0.95525 0.96801 1.22453 0.95185 1.00870 1.00111 1.23200 1.01605 0.93178 0.89778 1.67625 1.10680 1.15981 1.28079 1.22569 0.89528 0.96100 0.98228 0.91060 0.94291 0.90893 0.92263 0.93988 0.91349 0.90756 0.75815 0.89969 0.92289 0.89337 0.93202 0.90743 0.91060 0.94547 0.93288 0.80337 0.94559 0.81732 0.81895 0.81112 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.90 71.98 0.64 -2.04 16 2 C -0.07 -1.60 2.02 -10.79 -0.02 -1.62 16 3 C -0.14 -2.38 8.89 71.98 0.64 -1.74 16 4 C -0.05 -1.16 1.97 -12.28 -0.02 -1.19 16 5 H 0.12 2.28 7.93 -2.39 -0.02 2.27 16 6 C 0.52 16.78 5.57 87.66 0.49 17.26 16 7 O -0.58 -22.61 15.01 -3.03 -0.05 -22.66 16 8 N -0.70 -22.13 4.91 -442.53 -2.17 -24.30 16 9 C 0.15 4.94 2.02 44.99 0.09 5.03 16 10 H 0.05 1.91 7.51 -2.39 -0.02 1.89 16 11 C -0.11 -2.86 5.49 30.59 0.17 -2.69 16 12 C -0.11 -2.57 5.92 30.59 0.18 -2.39 16 13 C -0.11 -2.66 5.92 30.60 0.18 -2.48 16 14 C -0.13 -4.41 5.50 30.59 0.17 -4.24 16 15 C 0.17 6.37 2.29 44.99 0.10 6.47 16 16 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 17 N -0.73 -35.35 4.95 -322.94 -1.60 -36.95 16 18 C -0.23 -12.10 9.93 84.03 0.83 -11.27 16 19 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 20 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 21 N -0.97 -59.26 13.06 21.65 0.28 -58.98 16 22 Si 0.96 45.10 29.55 68.60 2.03 47.13 16 23 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 24 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 25 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 26 C -0.12 -3.49 3.33 -19.77 -0.07 -3.55 16 27 C -0.07 -1.68 9.81 22.47 0.22 -1.46 16 28 C -0.17 -4.28 10.11 22.36 0.23 -4.05 16 29 C 0.08 2.37 11.18 84.69 0.95 3.32 16 30 N -0.51 -18.58 10.36 -195.85 -2.03 -20.61 16 31 C 0.09 3.22 10.03 84.67 0.85 4.07 16 32 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.04 0.90 7.26 -2.39 -0.02 0.88 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 35 H 0.06 1.61 7.14 -2.39 -0.02 1.60 16 36 H 0.04 0.85 7.11 -2.38 -0.02 0.84 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.41 11.89 8.61 -92.71 -0.80 11.09 16 40 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 44 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.37 20.38 7.80 -92.71 -0.72 19.66 16 49 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 50 H 0.17 2.96 8.00 -2.91 -0.02 2.94 16 51 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 52 H 0.17 4.18 8.06 -2.91 -0.02 4.15 16 53 H 0.14 5.06 7.18 -2.91 -0.02 5.04 16 Total: -1.00 -71.74 420.13 1.93 -69.81 By element: Atomic # 1 Polarization: 53.25 SS G_CDS: -0.63 Total: 52.62 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 6.09 Total: -6.07 kcal Atomic # 7 Polarization: -135.32 SS G_CDS: -5.52 Total: -140.83 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.05 Total: -22.66 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -71.74 1.93 -69.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229335655.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.000 kcal (2) G-P(sol) polarization free energy of solvation -71.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds