Wall clock time and date at job start Wed Apr 1 2020 03:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46838 * 2 1 4 4 C 1.52995 * 109.47478 * 120.00100 * 2 1 3 5 5 H 1.09001 * 109.47104 * 294.33258 * 4 2 1 6 6 C 1.50702 * 109.47174 * 174.33351 * 4 2 1 7 7 O 1.21277 * 119.99882 * 265.19245 * 6 4 2 8 8 N 1.34774 * 119.99961 * 85.20123 * 6 4 2 9 9 C 1.46505 * 119.99654 * 175.22101 * 8 6 4 10 10 H 1.08993 * 109.47255 * 34.99696 * 9 8 6 11 11 C 1.53003 * 109.46997 * 274.99345 * 9 8 6 12 12 C 1.52995 * 109.47030 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47116 * 60.00139 * 12 11 9 14 14 C 1.52994 * 109.47158 * 299.99911 * 13 12 11 15 15 C 1.52998 * 109.47371 * 59.99914 * 14 13 12 16 16 H 1.09010 * 109.46922 * 59.99698 * 15 14 13 17 17 N 1.46491 * 109.47396 * 180.02562 * 15 14 13 18 18 C 1.36936 * 120.00246 * 275.00016 * 17 15 14 19 19 H 1.08001 * 119.99785 * 0.02562 * 18 17 15 20 20 C 1.38813 * 120.00666 * 179.97438 * 18 17 15 21 21 N 1.31618 * 119.99335 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00499 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46744 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47239 * 119.99625 * 22 20 18 25 25 H 1.48501 * 109.46975 * 240.00208 * 22 20 18 26 26 C 1.50702 * 109.47354 * 54.33200 * 4 2 1 27 27 C 1.38678 * 120.41914 * 239.72644 * 26 4 2 28 28 C 1.38625 * 118.41644 * 179.77714 * 27 26 4 29 29 C 1.38225 * 119.16262 * 0.47282 * 28 27 26 30 30 N 1.31851 * 120.76714 * 359.76527 * 29 28 27 31 31 C 1.31892 * 121.72327 * 0.02562 * 30 29 28 32 32 H 1.09001 * 109.46792 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47268 * 299.99401 * 1 2 3 34 34 H 1.08998 * 109.47306 * 60.00027 * 1 2 3 35 35 H 1.09001 * 109.47268 * 240.00599 * 2 1 3 36 36 H 1.09004 * 109.47046 * 176.71311 * 3 2 1 37 37 H 1.09003 * 109.47275 * 296.71195 * 3 2 1 38 38 H 1.08995 * 109.46784 * 56.71660 * 3 2 1 39 39 H 0.96996 * 120.00072 * 355.21255 * 8 6 4 40 40 H 1.09004 * 109.47027 * 300.00531 * 11 9 8 41 41 H 1.08999 * 109.46848 * 60.00339 * 11 9 8 42 42 H 1.09000 * 109.47113 * 180.02562 * 12 11 9 43 43 H 1.09000 * 109.47025 * 299.99855 * 12 11 9 44 44 H 1.08999 * 109.46654 * 179.97438 * 13 12 11 45 45 H 1.09003 * 109.46547 * 60.00227 * 13 12 11 46 46 H 1.09000 * 109.46994 * 300.00290 * 14 13 12 47 47 H 1.08999 * 109.46948 * 179.97438 * 14 13 12 48 48 H 0.97007 * 120.00368 * 94.99937 * 17 15 14 49 49 H 0.97008 * 119.99550 * 180.02562 * 21 20 18 50 50 H 1.08000 * 120.78958 * 0.02562 * 27 26 4 51 51 H 1.08002 * 120.41495 * 180.22088 * 28 27 26 52 52 H 1.08000 * 119.61843 * 179.74478 * 29 28 27 53 53 H 1.08000 * 119.61713 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7619 -0.1522 2.1363 6 6 3.5405 -0.8438 1.1809 7 8 4.0469 -1.8538 0.7402 8 7 4.3196 0.1688 1.6099 9 6 5.7756 0.0100 1.6416 10 1 6.0924 -0.6056 0.7999 11 6 6.1864 -0.6661 2.9512 12 6 7.7071 -0.8314 2.9847 13 6 8.3717 0.5435 2.8902 14 6 7.9609 1.2196 1.5807 15 6 6.4403 1.3849 1.5472 16 1 6.1231 2.0004 2.3891 17 7 6.0469 2.0318 0.2931 18 6 6.0659 3.3972 0.1915 19 1 6.3714 3.9973 1.0360 20 6 5.6937 4.0102 -0.9970 21 7 5.3219 3.2789 -2.0262 22 14 5.7203 5.8729 -1.1356 23 1 6.1719 6.4586 0.1522 24 1 6.6544 6.2754 -2.2176 25 1 4.3554 6.3653 -1.4512 26 6 1.4265 -2.0958 1.3214 27 6 0.6495 -2.4616 2.4103 28 6 0.1015 -3.7347 2.4317 29 6 0.3540 -4.5945 1.3793 30 7 1.1019 -4.2142 0.3622 31 6 1.6359 -3.0096 0.3063 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 1.8933 -0.5137 -0.8900 36 1 3.1283 1.4432 0.0589 37 1 1.7255 1.9391 -0.9180 38 1 1.6293 1.9730 0.8591 39 1 3.9162 1.0028 1.8974 40 1 5.8696 -0.0504 3.7930 41 1 5.7126 -1.6454 3.0187 42 1 7.9997 -1.3135 3.9174 43 1 8.0242 -1.4470 2.1429 44 1 9.4551 0.4257 2.9145 45 1 8.0545 1.1589 3.7321 46 1 8.2781 0.6041 0.7389 47 1 8.4341 2.1993 1.5137 48 1 5.7729 1.4929 -0.4656 49 1 5.0621 3.7073 -2.8569 50 1 0.4723 -1.7696 3.2204 51 1 -0.5117 -4.0522 3.2622 52 1 -0.0658 -5.5895 1.3904 53 1 2.2434 -2.7340 -0.5431 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229335664.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:55 Heat of formation + Delta-G solvation = -34.915061 kcal Electronic energy + Delta-G solvation = -32089.268001 eV Core-core repulsion = 28152.051763 eV Total energy + Delta-G solvation = -3937.216238 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.86642 -40.65235 -39.26097 -37.14593 -35.77724 -35.09024 -33.44814 -32.95393 -32.29396 -30.80592 -29.54074 -28.14708 -27.86959 -25.58883 -24.54563 -23.98528 -23.11607 -22.50324 -21.64494 -21.19273 -20.47157 -19.11712 -18.28925 -18.00636 -17.43504 -16.90963 -16.67973 -16.24077 -16.08942 -15.77783 -15.41300 -15.31654 -15.03848 -14.71481 -14.62593 -14.53287 -14.27696 -14.05650 -13.92939 -13.74508 -13.58984 -13.49086 -13.40175 -13.01280 -12.89353 -12.84322 -12.81396 -12.22137 -12.17366 -12.05275 -12.00011 -11.96664 -11.80572 -11.69662 -11.61770 -11.42260 -11.09573 -10.96277 -10.81449 -10.47914 -10.33179 -9.90556 -9.80752 -8.93877 -7.86028 -5.14219 0.20601 0.41459 1.48662 1.50924 1.58825 1.67775 2.28198 2.59578 2.94659 3.44048 3.47321 3.65079 3.73144 3.74070 3.81634 3.90241 4.03878 4.09852 4.14169 4.17604 4.23997 4.27347 4.34421 4.38685 4.45068 4.50371 4.54106 4.60375 4.65675 4.71055 4.73377 4.80930 4.91833 4.95690 5.00916 5.02037 5.03598 5.18822 5.22952 5.23488 5.24451 5.29953 5.31062 5.31883 5.42421 5.47788 5.53054 5.55888 5.61347 5.71725 5.84417 6.32605 6.65299 7.10147 7.33095 7.40499 8.13791 8.38604 9.36285 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010340 B = 0.003837 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.336391 B = 7294.707769 C = 9367.339317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 C -0.150 4.150 4 C -0.048 4.048 5 H 0.130 0.870 6 C 0.518 3.482 7 O -0.580 6.580 8 N -0.700 5.700 9 C 0.147 3.853 10 H 0.048 0.952 11 C -0.113 4.113 12 C -0.111 4.111 13 C -0.109 4.109 14 C -0.129 4.129 15 C 0.174 3.826 16 H 0.060 0.940 17 N -0.728 5.728 18 C -0.226 4.226 19 H 0.077 0.923 20 C -0.066 4.066 21 N -0.962 5.962 22 Si 0.959 3.041 23 H -0.266 1.266 24 H -0.304 1.304 25 H -0.297 1.297 26 C -0.120 4.120 27 C -0.069 4.069 28 C -0.167 4.167 29 C 0.079 3.921 30 N -0.521 5.521 31 C 0.113 3.887 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.409 0.591 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.086 0.914 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.037 0.963 47 H 0.050 0.950 48 H 0.368 0.632 49 H 0.245 0.755 50 H 0.166 0.834 51 H 0.172 0.828 52 H 0.178 0.822 53 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.789 -9.708 16.025 21.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.091 4.091 3 C -0.207 4.207 4 C -0.069 4.069 5 H 0.148 0.852 6 C 0.305 3.695 7 O -0.460 6.460 8 N -0.349 5.349 9 C 0.041 3.959 10 H 0.067 0.933 11 C -0.152 4.152 12 C -0.149 4.149 13 C -0.147 4.147 14 C -0.170 4.170 15 C 0.065 3.935 16 H 0.078 0.922 17 N -0.367 5.367 18 C -0.358 4.358 19 H 0.095 0.905 20 C -0.258 4.258 21 N -0.613 5.613 22 Si 0.790 3.210 23 H -0.190 1.190 24 H -0.232 1.232 25 H -0.224 1.224 26 C -0.123 4.123 27 C -0.095 4.095 28 C -0.186 4.186 29 C -0.077 4.077 30 N -0.230 5.230 31 C -0.043 4.043 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.245 0.755 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.056 0.944 47 H 0.068 0.932 48 H 0.200 0.800 49 H 0.054 0.946 50 H 0.184 0.816 51 H 0.189 0.811 52 H 0.195 0.805 53 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.252 -10.802 15.103 20.746 hybrid contribution 0.102 1.825 -0.820 2.004 sum -9.150 -8.977 14.283 19.191 Atomic orbital electron populations 1.21748 0.92463 1.01717 1.03074 1.20946 0.97604 0.95568 0.95020 1.21913 1.01671 0.94910 1.02246 1.20306 0.89757 0.94501 1.02374 0.85229 1.20811 0.89908 0.82622 0.76111 1.90666 1.76416 1.31888 1.47076 1.45987 1.06681 1.16803 1.65468 1.21133 0.79788 0.96767 0.98173 0.93328 1.21788 0.96896 1.00055 0.96437 1.21474 0.93781 0.97301 1.02346 1.21504 1.00425 0.95933 0.96827 1.22101 0.97458 0.99786 0.97632 1.20636 0.92797 0.90856 0.89190 0.92224 1.42551 1.79645 1.03232 1.11261 1.19536 1.35343 0.83956 0.96989 0.90511 1.25339 1.03347 1.00852 0.96299 1.69840 1.53372 1.34876 1.03219 0.85280 0.76387 0.81962 0.77351 1.18990 1.23226 1.22426 1.20331 0.99824 0.95597 0.96508 1.21872 0.93666 0.97277 0.96657 1.22464 1.01414 0.94021 1.00718 1.23321 0.93925 1.01123 0.89358 1.67681 1.09978 1.17721 1.27660 1.22398 0.94887 0.88975 0.98059 0.93055 0.90279 0.92414 0.93481 0.93051 0.93779 0.90484 0.75479 0.89996 0.92833 0.89566 0.93236 0.91098 0.90783 0.94429 0.93168 0.80010 0.94556 0.81641 0.81071 0.80546 0.85701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 8.86 71.98 0.64 -2.15 16 2 C -0.07 -1.93 2.24 -10.79 -0.02 -1.96 16 3 C -0.15 -4.56 8.70 71.98 0.63 -3.93 16 4 C -0.05 -1.17 1.98 -12.29 -0.02 -1.20 16 5 H 0.13 2.31 7.93 -2.39 -0.02 2.29 16 6 C 0.52 16.72 6.36 87.66 0.56 17.28 16 7 O -0.58 -23.29 14.21 -3.02 -0.04 -23.34 16 8 N -0.70 -21.54 3.94 -442.52 -1.74 -23.28 16 9 C 0.15 4.85 2.02 44.99 0.09 4.94 16 10 H 0.05 1.97 7.51 -2.39 -0.02 1.95 16 11 C -0.11 -2.94 5.49 30.59 0.17 -2.77 16 12 C -0.11 -2.61 5.92 30.59 0.18 -2.43 16 13 C -0.11 -2.65 5.92 30.59 0.18 -2.47 16 14 C -0.13 -4.32 5.50 30.59 0.17 -4.15 16 15 C 0.17 6.25 2.29 44.99 0.10 6.35 16 16 H 0.06 2.05 8.08 -2.38 -0.02 2.03 16 17 N -0.73 -33.87 4.95 -322.94 -1.60 -35.47 16 18 C -0.23 -11.56 9.93 84.03 0.83 -10.73 16 19 H 0.08 3.76 7.83 -2.91 -0.02 3.74 16 20 C -0.07 -3.57 5.50 84.86 0.47 -3.10 16 21 N -0.96 -56.81 13.06 21.65 0.28 -56.53 16 22 Si 0.96 44.45 29.55 68.60 2.03 46.48 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 25 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 26 C -0.12 -2.97 3.14 -19.77 -0.06 -3.03 16 27 C -0.07 -1.22 9.81 22.47 0.22 -1.00 16 28 C -0.17 -2.63 10.11 22.36 0.23 -2.41 16 29 C 0.08 1.65 11.18 84.69 0.95 2.60 16 30 N -0.52 -15.32 10.36 -195.84 -2.03 -17.35 16 31 C 0.11 3.48 9.08 84.67 0.77 4.25 16 32 H 0.05 1.10 7.01 -2.39 -0.02 1.08 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.05 1.53 7.62 -2.39 -0.02 1.52 16 36 H 0.05 1.91 5.95 -2.38 -0.01 1.90 16 37 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.41 11.61 7.58 -92.71 -0.70 10.90 16 40 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.37 19.56 7.80 -92.70 -0.72 18.84 16 49 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 50 H 0.17 1.76 8.00 -2.91 -0.02 1.74 16 51 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 52 H 0.18 2.51 8.06 -2.91 -0.02 2.49 16 53 H 0.13 4.50 6.97 -2.91 -0.02 4.48 16 Total: -1.00 -69.52 415.87 2.44 -67.08 By element: Atomic # 1 Polarization: 48.84 SS G_CDS: -0.53 Total: 48.32 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 6.07 Total: -5.91 kcal Atomic # 7 Polarization: -127.54 SS G_CDS: -5.09 Total: -132.63 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.04 Total: -23.34 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -69.52 2.44 -67.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229335664.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.165 kcal (2) G-P(sol) polarization free energy of solvation -69.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds