Wall clock time and date at job start Wed Apr 1 2020 04:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46818 * 2 1 4 4 H 1.08998 * 109.47827 * 55.55789 * 3 2 1 5 5 C 1.50707 * 109.47074 * 175.56356 * 3 2 1 6 6 H 1.07996 * 119.99896 * 119.99636 * 5 3 2 7 7 C 1.37877 * 119.99688 * 299.99718 * 5 3 2 8 8 N 1.31514 * 119.99960 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 120.00102 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.46827 * 90.00106 * 9 7 5 11 11 H 1.48496 * 109.47287 * 210.00208 * 9 7 5 12 12 H 1.48501 * 109.47169 * 330.00278 * 9 7 5 13 13 N 1.46901 * 109.47088 * 295.55962 * 3 2 1 14 14 C 1.46895 * 111.00221 * 151.18685 * 13 3 2 15 15 C 1.50702 * 109.52259 * 295.14933 * 14 13 3 16 16 N 1.34775 * 119.99973 * 318.68077 * 15 14 13 17 17 O 1.21284 * 120.00070 * 138.67444 * 15 14 13 18 18 C 1.53116 * 109.52542 * 174.96371 * 14 13 3 19 19 C 1.53036 * 109.28017 * 182.43860 * 18 14 13 20 20 N 1.46853 * 109.52478 * 59.17874 * 19 18 14 21 21 C 1.46894 * 110.99904 * 174.16296 * 20 19 18 22 22 C 1.50699 * 109.47211 * 294.20738 * 21 20 19 23 23 C 1.38239 * 120.00005 * 269.72906 * 22 21 20 24 24 C 1.38233 * 120.00145 * 179.78811 * 23 22 21 25 25 C 1.38238 * 119.99521 * 0.43914 * 24 23 22 26 26 C 1.38231 * 120.00578 * 359.81613 * 25 24 23 27 27 C 1.38235 * 120.00234 * 90.00362 * 22 21 20 28 28 C 1.46847 * 111.19373 * 298.25559 * 20 19 18 29 29 C 1.53038 * 109.52077 * 61.74517 * 28 20 19 30 30 H 1.09000 * 109.47108 * 56.49155 * 1 2 3 31 31 H 1.08996 * 109.47086 * 176.49020 * 1 2 3 32 32 H 1.08999 * 109.46874 * 296.48783 * 1 2 3 33 33 H 1.08996 * 109.47077 * 119.99265 * 2 1 3 34 34 H 1.08997 * 109.47096 * 240.00011 * 2 1 3 35 35 H 0.96995 * 119.99805 * 179.97438 * 8 7 5 36 36 H 1.00900 * 111.00024 * 275.14041 * 13 3 2 37 37 H 0.96999 * 120.00042 * 4.75707 * 16 15 14 38 38 H 0.97006 * 120.00104 * 184.74424 * 16 15 14 39 39 H 1.09001 * 109.50520 * 302.37891 * 18 14 13 40 40 H 1.09000 * 109.50494 * 62.49669 * 18 14 13 41 41 H 1.09004 * 109.46434 * 299.16471 * 19 18 14 42 42 H 1.08996 * 109.46693 * 179.19289 * 19 18 14 43 43 H 1.09000 * 109.47525 * 54.21118 * 21 20 19 44 44 H 1.09006 * 109.47023 * 174.21191 * 21 20 19 45 45 H 1.07999 * 119.99836 * 359.97438 * 23 22 21 46 46 H 1.08000 * 120.00174 * 180.27470 * 24 23 22 47 47 H 1.08006 * 119.99536 * 179.83542 * 25 24 23 48 48 H 1.07991 * 120.00378 * 179.97438 * 26 25 24 49 49 H 1.08003 * 119.99769 * 359.97438 * 27 22 21 50 50 H 1.08992 * 109.46539 * 301.73018 * 28 20 19 51 51 H 1.09000 * 109.45935 * 181.75676 * 28 20 19 52 52 H 1.09007 * 109.50482 * 180.87503 * 29 28 20 53 53 H 1.09002 * 109.50625 * 60.75750 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6131 1.9789 0.8475 5 6 3.5430 1.4440 0.1099 6 1 4.1410 1.8911 -0.6703 7 6 4.1545 0.8746 1.2066 8 7 5.4662 0.8763 1.3028 9 14 3.1200 0.1019 2.5566 10 1 2.8953 -1.3332 2.2478 11 1 3.8298 0.2236 3.8552 12 1 1.8125 0.8009 2.6397 13 7 1.6398 2.1034 -1.2495 14 6 1.4747 3.5494 -1.0508 15 6 0.3312 3.8000 -0.1016 16 7 -0.7999 3.0743 -0.2027 17 8 0.4289 4.6548 0.7533 18 6 1.1816 4.2206 -2.3954 19 6 1.0709 5.7333 -2.1917 20 7 2.3279 6.2463 -1.6319 21 6 2.3086 7.7130 -1.5519 22 6 2.2668 8.2914 -2.9428 23 6 3.4443 8.5793 -3.6073 24 6 3.4061 9.1058 -4.8849 25 6 2.1902 9.3530 -5.4944 26 6 1.0126 9.0701 -4.8279 27 6 1.0510 8.5395 -3.5520 28 6 2.6062 5.6513 -0.3186 29 6 2.7627 4.1361 -0.4664 30 1 -0.3633 0.5673 -0.8569 31 1 -0.3633 -1.0257 -0.0629 32 1 -0.3633 0.4583 0.9198 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 5.8963 0.4760 2.0745 36 1 2.3013 1.9130 -1.9872 37 1 -0.8529 2.3449 -0.8400 38 1 -1.5610 3.2811 0.3620 39 1 1.9907 4.0056 -3.0935 40 1 0.2430 3.8378 -2.7963 41 1 0.2528 5.9483 -1.5042 42 1 0.8765 6.2155 -3.1496 43 1 1.4270 8.0351 -0.9977 44 1 3.2063 8.0608 -1.0406 45 1 4.3942 8.3900 -3.1295 46 1 4.3260 9.3266 -5.4058 47 1 2.1602 9.7669 -6.4915 48 1 0.0628 9.2636 -5.3038 49 1 0.1310 8.3184 -3.0312 50 1 1.7808 5.8666 0.3600 51 1 3.5268 6.0739 0.0839 52 1 2.9538 3.6928 0.5109 53 1 3.5967 3.9198 -1.1341 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158299.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:06 Heat of formation + Delta-G solvation = -22.484416 kcal Electronic energy + Delta-G solvation = -32468.182747 eV Core-core repulsion = 28531.505542 eV Total energy + Delta-G solvation = -3936.677204 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.90574 -40.24022 -38.54230 -37.98881 -35.26406 -34.54350 -33.93774 -32.62660 -31.97425 -31.60303 -30.42573 -28.74266 -26.68663 -24.69513 -24.36224 -24.33572 -23.30279 -22.39931 -21.87478 -21.26761 -20.42851 -18.93612 -18.07103 -17.63945 -17.55493 -17.10122 -16.81687 -16.35071 -16.18992 -16.01578 -15.55368 -15.45059 -15.21089 -14.90543 -14.77701 -14.59183 -14.47077 -14.22266 -13.96134 -13.72075 -13.66423 -13.43520 -13.31187 -13.25306 -13.01672 -12.82377 -12.68149 -12.49956 -12.18461 -12.10774 -11.98221 -11.83519 -11.78798 -11.57074 -11.39347 -11.25975 -11.06818 -10.64546 -10.63566 -10.48806 -9.74612 -9.64419 -9.23995 -9.10217 -8.29927 -6.30484 0.47194 0.56421 1.24344 1.32245 1.38918 1.69592 2.28465 2.69892 2.80733 3.05436 3.24796 3.28205 3.79549 3.81065 3.96508 4.01123 4.11090 4.21663 4.29969 4.31185 4.37377 4.43636 4.45657 4.49350 4.52452 4.62531 4.66582 4.70390 4.74173 4.76827 4.83131 4.91958 4.95355 5.03626 5.14895 5.15818 5.19259 5.22265 5.26927 5.30427 5.41015 5.48866 5.52133 5.61989 5.64280 5.67904 5.77237 5.98464 6.06337 6.11225 6.18078 6.19384 6.32342 6.54689 6.61632 6.79677 7.34570 7.47770 8.85605 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.016520 B = 0.003210 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.558656 B = 8719.731838 C = 9440.138570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.120 4.120 3 C 0.193 3.807 4 H 0.012 0.988 5 C -0.523 4.523 6 H 0.048 0.952 7 C 0.019 3.981 8 N -0.943 5.943 9 Si 0.937 3.063 10 H -0.263 1.263 11 H -0.309 1.309 12 H -0.260 1.260 13 N -0.647 5.647 14 C 0.105 3.895 15 C 0.538 3.462 16 N -0.827 5.827 17 O -0.585 6.585 18 C -0.092 4.092 19 C 0.059 3.941 20 N -0.531 5.531 21 C 0.094 3.906 22 C -0.083 4.083 23 C -0.115 4.115 24 C -0.127 4.127 25 C -0.126 4.126 26 C -0.124 4.124 27 C -0.124 4.124 28 C 0.045 3.955 29 C -0.103 4.103 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.036 0.964 33 H 0.026 0.974 34 H 0.064 0.936 35 H 0.262 0.738 36 H 0.349 0.651 37 H 0.417 0.583 38 H 0.402 0.598 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.022 0.978 42 H 0.094 0.906 43 H 0.038 0.962 44 H 0.078 0.922 45 H 0.119 0.881 46 H 0.137 0.863 47 H 0.143 0.857 48 H 0.143 0.857 49 H 0.123 0.877 50 H 0.062 0.938 51 H 0.055 0.945 52 H 0.049 0.951 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.004 12.006 -13.132 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 C 0.083 3.917 4 H 0.030 0.970 5 C -0.562 4.562 6 H 0.066 0.934 7 C -0.179 4.179 8 N -0.583 5.583 9 Si 0.767 3.233 10 H -0.189 1.189 11 H -0.237 1.237 12 H -0.185 1.185 13 N -0.278 5.278 14 C 0.010 3.990 15 C 0.323 3.677 16 N -0.392 5.392 17 O -0.466 6.466 18 C -0.131 4.131 19 C -0.069 4.069 20 N -0.256 5.256 21 C -0.033 4.033 22 C -0.084 4.084 23 C -0.134 4.134 24 C -0.145 4.145 25 C -0.144 4.144 26 C -0.142 4.142 27 C -0.142 4.142 28 C -0.083 4.083 29 C -0.143 4.143 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.167 0.833 37 H 0.250 0.750 38 H 0.233 0.767 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.041 0.959 42 H 0.112 0.888 43 H 0.056 0.944 44 H 0.097 0.903 45 H 0.137 0.863 46 H 0.155 0.845 47 H 0.161 0.839 48 H 0.160 0.840 49 H 0.141 0.859 50 H 0.080 0.920 51 H 0.073 0.927 52 H 0.067 0.933 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.958 12.202 -12.794 22.526 hybrid contribution 0.660 -0.384 1.997 2.138 sum -13.298 11.818 -10.797 20.811 Atomic orbital electron populations 1.21747 0.94380 1.01633 1.01695 1.21767 0.96779 0.97306 0.99907 1.19391 0.91686 0.91902 0.88746 0.97036 1.21988 0.92295 1.36070 1.05854 0.93416 1.25672 0.95418 0.96582 1.00222 1.70037 1.10178 1.47132 1.30956 0.86034 0.79237 0.79835 0.78236 1.18925 1.23737 1.18453 1.60919 1.52836 1.05552 1.08475 1.21063 0.92075 0.90368 0.95515 1.20509 0.84397 0.79714 0.83071 1.43791 1.15096 1.36438 1.43825 1.90565 1.82234 1.36363 1.37388 1.21595 1.04026 0.93645 0.93807 1.22131 0.89615 0.95207 0.99960 1.61994 1.34216 1.05102 1.24248 1.21002 1.01313 0.87248 0.93750 1.19752 0.93994 0.98923 0.95729 1.21176 0.97825 0.98789 0.95603 1.21414 0.99135 0.99125 0.94861 1.21469 0.92250 0.99888 1.00795 1.21399 0.99423 0.98839 0.94523 1.21204 0.97069 0.99838 0.96136 1.22403 1.00986 0.94631 0.90311 1.21911 0.96951 0.94464 1.00977 0.89986 0.92239 0.94482 0.95601 0.91719 0.92924 0.83256 0.74967 0.76664 0.90042 0.88254 0.95945 0.88774 0.94392 0.90337 0.86326 0.84498 0.83892 0.83967 0.85888 0.91981 0.92678 0.93277 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.46 71.98 0.68 -3.25 16 2 C -0.12 -4.57 5.11 30.60 0.16 -4.41 16 3 C 0.19 8.14 0.94 44.17 0.04 8.18 16 4 H 0.01 0.56 5.49 -2.39 -0.01 0.54 16 5 C -0.52 -27.63 6.80 25.60 0.17 -27.46 16 6 H 0.05 2.77 7.07 -2.91 -0.02 2.75 16 7 C 0.02 1.09 5.45 84.65 0.46 1.55 16 8 N -0.94 -58.09 13.96 21.45 0.30 -57.79 16 9 Si 0.94 45.64 24.41 68.60 1.67 47.32 16 10 H -0.26 -12.06 6.83 99.48 0.68 -11.38 16 11 H -0.31 -15.43 7.11 99.48 0.71 -14.73 16 12 H -0.26 -12.21 6.53 99.48 0.65 -11.56 16 13 N -0.65 -21.83 4.71 -455.38 -2.15 -23.97 16 14 C 0.10 3.47 0.63 2.86 0.00 3.48 16 15 C 0.54 18.10 4.37 87.66 0.38 18.48 16 16 N -0.83 -20.49 8.68 -173.53 -1.51 -21.99 16 17 O -0.59 -23.76 14.00 -3.04 -0.04 -23.80 16 18 C -0.09 -2.44 5.08 30.64 0.16 -2.28 16 19 C 0.06 1.57 4.95 86.32 0.43 2.00 16 20 N -0.53 -16.02 4.65 -900.94 -4.19 -20.21 16 21 C 0.09 2.48 5.12 85.56 0.44 2.92 16 22 C -0.08 -1.94 4.89 -19.87 -0.10 -2.04 16 23 C -0.12 -2.57 9.70 22.27 0.22 -2.36 16 24 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 25 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16 26 C -0.12 -2.07 10.05 22.27 0.22 -1.84 16 27 C -0.12 -2.48 7.88 22.27 0.18 -2.31 16 28 C 0.04 1.63 5.19 86.33 0.45 2.08 16 29 C -0.10 -4.20 3.44 30.65 0.11 -4.09 16 30 H 0.08 1.96 5.71 -2.39 -0.01 1.94 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.03 1.10 3.22 -2.39 -0.01 1.09 16 34 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 36 H 0.35 12.03 8.26 -89.69 -0.74 11.29 16 37 H 0.42 8.80 6.08 -92.71 -0.56 8.23 16 38 H 0.40 8.45 8.93 -92.70 -0.83 7.62 16 39 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.10 2.08 8.14 -2.39 -0.02 2.07 16 41 H 0.02 0.64 7.15 -2.39 -0.02 0.63 16 42 H 0.09 2.21 5.75 -2.39 -0.01 2.19 16 43 H 0.04 1.00 8.07 -2.39 -0.02 0.98 16 44 H 0.08 2.06 7.93 -2.38 -0.02 2.04 16 45 H 0.12 2.63 8.06 -2.91 -0.02 2.61 16 46 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 47 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 48 H 0.14 1.64 8.06 -2.92 -0.02 1.62 16 49 H 0.12 2.25 7.95 -2.91 -0.02 2.22 16 50 H 0.06 2.48 5.15 -2.39 -0.01 2.47 16 51 H 0.05 2.04 8.02 -2.39 -0.02 2.02 16 52 H 0.05 2.44 6.03 -2.38 -0.01 2.43 16 53 H 0.05 2.35 7.49 -2.39 -0.02 2.33 16 Total: -1.00 -68.43 389.55 -2.74 -71.17 By element: Atomic # 1 Polarization: 45.83 SS G_CDS: -1.27 Total: 44.56 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 4.44 Total: -15.28 kcal Atomic # 7 Polarization: -116.42 SS G_CDS: -7.54 Total: -123.96 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.04 Total: -23.80 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.67 Total: 47.32 kcal Total: -68.43 -2.74 -71.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158299.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.685 kcal (2) G-P(sol) polarization free energy of solvation -68.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds