Wall clock time and date at job start Wed Apr 1 2020 04:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47187 * 2 1 4 4 H 1.09000 * 109.46856 * 177.90505 * 3 2 1 5 5 C 1.50688 * 109.46990 * 297.90752 * 3 2 1 6 6 H 1.07999 * 120.00211 * 120.00111 * 5 3 2 7 7 C 1.37882 * 120.00342 * 299.99681 * 5 3 2 8 8 N 1.31510 * 119.99422 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00049 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47180 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46943 * 120.00352 * 9 7 5 12 12 H 1.48497 * 109.46591 * 239.99926 * 9 7 5 13 13 N 1.46904 * 109.46640 * 57.90800 * 3 2 1 14 14 C 1.46847 * 110.99998 * 54.35245 * 13 3 2 15 15 C 1.53044 * 109.52047 * 185.83627 * 14 13 3 16 16 C 1.53119 * 109.27874 * 300.81913 * 15 14 13 17 17 N 1.46900 * 109.52434 * 297.75185 * 16 15 14 18 18 C 1.50704 * 109.57397 * 177.58738 * 16 15 14 19 19 O 1.21275 * 120.00061 * 265.28689 * 18 16 15 20 20 N 1.34773 * 119.99550 * 85.29047 * 18 16 15 21 21 C 1.46501 * 119.99935 * 180.02562 * 20 18 16 22 22 C 1.50700 * 109.47022 * 179.97438 * 21 20 18 23 23 C 1.38236 * 119.99925 * 269.72093 * 22 21 20 24 24 C 1.38230 * 120.00391 * 179.77172 * 23 22 21 25 25 C 1.38243 * 119.99682 * 0.50210 * 24 23 22 26 26 C 1.38234 * 119.99710 * 359.75557 * 25 24 23 27 27 C 1.38231 * 120.00232 * 89.99804 * 22 21 20 28 28 C 1.53124 * 109.16016 * 57.65311 * 16 15 14 29 29 C 1.46845 * 110.99588 * 178.56005 * 13 3 2 30 30 H 1.08989 * 109.47379 * 65.36798 * 1 2 3 31 31 H 1.08997 * 109.47290 * 185.37272 * 1 2 3 32 32 H 1.09005 * 109.46948 * 305.36438 * 1 2 3 33 33 H 1.09004 * 109.46897 * 240.00043 * 2 1 3 34 34 H 1.09002 * 109.47251 * 120.00335 * 2 1 3 35 35 H 0.97006 * 119.99838 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.46413 * 305.84728 * 14 13 3 37 37 H 1.08994 * 109.46474 * 65.82361 * 14 13 3 38 38 H 1.08992 * 109.50278 * 180.87840 * 15 14 13 39 39 H 1.09002 * 109.49958 * 60.75701 * 15 14 13 40 40 H 1.00894 * 110.99590 * 299.67974 * 17 16 15 41 41 H 1.00898 * 110.99959 * 63.63610 * 17 16 15 42 42 H 0.97001 * 120.00036 * 359.97438 * 20 18 16 43 43 H 1.09000 * 109.46974 * 299.99320 * 21 20 18 44 44 H 1.08998 * 109.47187 * 59.99130 * 21 20 18 45 45 H 1.08000 * 119.99689 * 359.97438 * 23 22 21 46 46 H 1.07997 * 120.00243 * 180.23425 * 24 23 22 47 47 H 1.07998 * 119.99568 * 179.72880 * 25 24 23 48 48 H 1.08003 * 119.99765 * 179.97438 * 26 25 24 49 49 H 1.08001 * 120.00391 * 0.02562 * 27 22 21 50 50 H 1.09000 * 109.50743 * 182.40204 * 28 16 15 51 51 H 1.09007 * 109.53470 * 62.30580 * 28 16 15 52 52 H 1.08999 * 109.46737 * 294.17481 * 29 13 3 53 53 H 1.09007 * 109.46459 * 54.15325 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0376 5 6 1.5805 2.1377 -1.2555 6 1 0.9568 3.0168 -1.1886 7 6 1.9564 1.6516 -2.4898 8 7 2.7156 0.5808 -2.5713 9 14 1.3873 2.5139 -4.0461 10 1 0.5490 3.6851 -3.6848 11 1 2.5699 2.9706 -4.8196 12 1 0.5903 1.5709 -4.8711 13 7 1.5094 2.1494 1.1734 14 6 1.8247 1.4249 2.4112 15 6 1.1354 2.1092 3.5940 16 6 1.6193 3.5587 3.6915 17 7 3.0659 3.5773 3.9461 18 6 0.9006 4.2562 4.8176 19 8 -0.0981 4.9054 4.5897 20 7 1.3678 4.1585 6.0780 21 6 0.6690 4.8360 7.1729 22 6 1.3891 4.5695 8.4696 23 6 1.0423 3.4758 9.2406 24 6 1.7059 3.2286 10.4277 25 6 2.7095 4.0810 10.8490 26 6 3.0526 5.1776 10.0806 27 6 2.3925 5.4218 8.8908 28 6 1.3227 4.2773 2.3723 29 6 2.0064 3.5302 1.2251 30 1 -0.3633 0.4283 -0.9340 31 1 -0.3634 -1.0231 0.0962 32 1 -0.3633 0.5948 0.8381 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.9804 0.2390 -3.4396 36 1 1.4716 0.3969 2.3304 37 1 2.9032 1.4271 2.5686 38 1 1.3823 1.5805 4.5145 39 1 0.0559 2.0952 3.4438 40 1 3.2867 3.1086 4.8119 41 1 3.5740 3.1707 3.1750 42 1 2.1664 3.6389 6.2603 43 1 0.6487 5.9090 6.9821 44 1 -0.3518 4.4596 7.2404 45 1 0.2550 2.8126 8.9139 46 1 1.4376 2.3720 11.0282 47 1 3.2250 3.8903 11.7786 48 1 3.8364 5.8438 10.4099 49 1 2.6602 6.2791 8.2909 50 1 1.7032 5.2976 2.4201 51 1 0.2461 4.2981 2.2026 52 1 3.0841 3.5225 1.3880 53 1 1.7852 4.0313 0.2826 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255159818.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:39 Heat of formation + Delta-G solvation = -24.714950 kcal Electronic energy + Delta-G solvation = -30975.614895 eV Core-core repulsion = 27038.840968 eV Total energy + Delta-G solvation = -3936.773928 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.68570 -40.27502 -39.52122 -37.05834 -36.06360 -34.44514 -33.04881 -32.12241 -31.79050 -31.71408 -30.38255 -28.41281 -27.38167 -25.80484 -24.60134 -23.84347 -23.46947 -22.31667 -21.92682 -20.92097 -19.82683 -18.82340 -18.12917 -17.58427 -17.52530 -17.02584 -16.63825 -16.20892 -16.11731 -15.83776 -15.68607 -15.60474 -15.24047 -14.99141 -14.84931 -14.73425 -14.28317 -14.00258 -13.92393 -13.79171 -13.68016 -13.48421 -13.45154 -13.16237 -12.82590 -12.79013 -12.57220 -12.38005 -12.24342 -12.11678 -12.00140 -11.91348 -11.76201 -11.65568 -11.56541 -11.27291 -10.81114 -10.72664 -10.42357 -10.15987 -9.85159 -9.82348 -9.70268 -8.80827 -8.06509 -6.14810 0.30434 0.49829 1.39930 1.43718 1.53940 1.54711 2.17517 2.44352 2.93758 3.20743 3.32090 3.34879 3.64887 3.67968 3.75399 3.93428 3.94593 4.15805 4.26046 4.30883 4.36965 4.39612 4.47800 4.54099 4.58962 4.62988 4.69426 4.70708 4.76029 4.78048 4.87885 4.91904 4.97770 5.06512 5.10346 5.16395 5.20695 5.27177 5.29554 5.36423 5.48610 5.53164 5.55324 5.62878 5.65467 5.76341 5.80605 5.91431 5.93616 6.08700 6.35100 6.36840 6.45879 6.52913 6.81123 6.98144 7.17368 7.52675 8.98597 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.023927 B = 0.002168 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.953094 B =12914.742398 C =13248.634618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.108 4.108 3 C 0.225 3.775 4 H -0.037 1.037 5 C -0.499 4.499 6 H 0.051 0.949 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.947 3.053 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.534 5.534 14 C 0.054 3.946 15 C -0.126 4.126 16 C 0.116 3.884 17 N -0.827 5.827 18 C 0.536 3.464 19 O -0.576 6.576 20 N -0.704 5.704 21 C 0.162 3.838 22 C -0.114 4.114 23 C -0.109 4.109 24 C -0.128 4.128 25 C -0.117 4.117 26 C -0.128 4.128 27 C -0.109 4.109 28 C -0.080 4.080 29 C 0.070 3.930 30 H 0.029 0.971 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.033 0.967 35 H 0.259 0.741 36 H 0.079 0.921 37 H 0.028 0.972 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.349 0.651 41 H 0.353 0.647 42 H 0.411 0.589 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.130 0.870 46 H 0.141 0.859 47 H 0.143 0.857 48 H 0.140 0.860 49 H 0.127 0.873 50 H 0.067 0.933 51 H 0.062 0.938 52 H 0.026 0.974 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.706 4.031 27.516 27.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.147 4.147 3 C 0.119 3.881 4 H -0.020 1.020 5 C -0.538 4.538 6 H 0.069 0.931 7 C -0.183 4.183 8 N -0.558 5.558 9 Si 0.774 3.226 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.259 5.259 14 C -0.075 4.075 15 C -0.166 4.166 16 C 0.020 3.980 17 N -0.363 5.363 18 C 0.322 3.678 19 O -0.454 6.454 20 N -0.356 5.356 21 C 0.040 3.960 22 C -0.115 4.115 23 C -0.128 4.128 24 C -0.146 4.146 25 C -0.135 4.135 26 C -0.146 4.146 27 C -0.128 4.128 28 C -0.119 4.119 29 C -0.058 4.058 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.046 0.954 38 H 0.112 0.888 39 H 0.084 0.916 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.248 0.752 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.147 0.853 46 H 0.159 0.841 47 H 0.160 0.840 48 H 0.158 0.842 49 H 0.145 0.855 50 H 0.086 0.914 51 H 0.081 0.919 52 H 0.044 0.956 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.487 5.215 27.206 27.705 hybrid contribution 0.933 -0.899 -1.327 1.854 sum 1.420 4.317 25.879 26.274 Atomic orbital electron populations 1.21337 0.96016 0.98608 1.00783 1.21479 0.96137 0.97475 0.99571 1.19002 0.90283 0.91491 0.87363 1.01955 1.21280 1.30167 1.11486 0.90877 0.93060 1.25537 0.95521 0.95740 1.01491 1.69995 1.37432 1.23611 1.24714 0.85668 0.77943 0.78709 0.80286 1.19650 1.20926 1.20909 1.61935 1.60023 1.01688 1.02227 1.22107 0.97095 0.98623 0.89634 1.22223 1.01692 0.94041 0.98674 1.20798 0.89184 0.94840 0.93177 1.58976 1.03791 1.64468 1.09059 1.20523 0.83708 0.79601 0.83966 1.90685 1.27636 1.42788 1.84331 1.45920 1.30857 1.53028 1.05845 1.20160 0.95324 0.97565 0.83000 1.19773 0.98468 0.97199 0.96020 1.21280 0.99925 0.96599 0.94973 1.21452 0.96346 1.00314 0.96443 1.21557 0.97131 0.94435 1.00360 1.21443 1.00240 0.98300 0.94593 1.21270 0.95284 0.99254 0.96955 1.21333 1.00894 0.98127 0.91536 1.21853 0.95719 0.90047 0.98177 0.95201 0.94348 0.92785 0.91954 0.94805 0.93187 0.90292 0.95444 0.88820 0.91639 0.83570 0.83068 0.75244 0.91509 0.91162 0.85253 0.84105 0.83956 0.84214 0.85540 0.91405 0.91940 0.95581 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.68 9.35 71.98 0.67 -4.00 16 2 C -0.11 -4.98 4.95 30.59 0.15 -4.83 16 3 C 0.23 10.88 1.76 44.17 0.08 10.96 16 4 H -0.04 -2.01 8.14 -2.39 -0.02 -2.02 16 5 C -0.50 -26.75 6.79 25.60 0.17 -26.58 16 6 H 0.05 2.82 6.81 -2.91 -0.02 2.80 16 7 C 0.02 0.85 5.30 84.66 0.45 1.29 16 8 N -0.92 -51.80 11.30 21.45 0.24 -51.55 16 9 Si 0.95 43.99 29.54 68.60 2.03 46.02 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 N -0.53 -21.31 3.61 -875.51 -3.16 -24.47 16 14 C 0.05 1.70 4.63 86.33 0.40 2.10 16 15 C -0.13 -3.29 5.04 30.65 0.15 -3.13 16 16 C 0.12 3.08 0.89 2.86 0.00 3.08 16 17 N -0.83 -17.74 8.67 -154.19 -1.34 -19.08 16 18 C 0.54 14.54 6.72 87.66 0.59 15.13 16 19 O -0.58 -20.39 16.05 -3.01 -0.05 -20.44 16 20 N -0.70 -13.59 5.45 -466.79 -2.54 -16.13 16 21 C 0.16 2.96 5.80 85.63 0.50 3.46 16 22 C -0.11 -1.68 5.25 -19.87 -0.10 -1.78 16 23 C -0.11 -1.42 9.70 22.27 0.22 -1.20 16 24 C -0.13 -1.38 10.05 22.27 0.22 -1.15 16 25 C -0.12 -1.18 10.05 22.27 0.22 -0.95 16 26 C -0.13 -1.43 10.05 22.27 0.22 -1.21 16 27 C -0.11 -1.48 9.70 22.27 0.22 -1.27 16 28 C -0.08 -2.67 4.65 30.65 0.14 -2.53 16 29 C 0.07 2.68 5.03 86.33 0.43 3.11 16 30 H 0.03 1.39 7.47 -2.39 -0.02 1.37 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 2.19 7.10 -2.38 -0.02 2.18 16 33 H 0.06 3.29 6.02 -2.39 -0.01 3.27 16 34 H 0.03 1.39 6.33 -2.39 -0.02 1.37 16 35 H 0.26 14.02 8.31 -92.70 -0.77 13.24 16 36 H 0.08 2.56 5.74 -2.39 -0.01 2.55 16 37 H 0.03 0.83 6.83 -2.39 -0.02 0.81 16 38 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.35 5.35 7.44 -89.70 -0.67 4.68 16 41 H 0.35 8.38 5.60 -89.70 -0.50 7.88 16 42 H 0.41 6.06 6.84 -92.71 -0.63 5.42 16 43 H 0.07 1.35 8.09 -2.39 -0.02 1.33 16 44 H 0.07 1.36 8.08 -2.39 -0.02 1.34 16 45 H 0.13 1.47 8.06 -2.91 -0.02 1.44 16 46 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16 47 H 0.14 0.80 8.06 -2.91 -0.02 0.78 16 48 H 0.14 1.03 8.06 -2.91 -0.02 1.01 16 49 H 0.13 1.60 8.06 -2.91 -0.02 1.57 16 50 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 51 H 0.06 2.35 7.79 -2.38 -0.02 2.33 16 52 H 0.03 0.96 6.64 -2.39 -0.02 0.95 16 53 H 0.06 2.69 6.39 -2.38 -0.02 2.67 16 Total: -1.00 -65.23 404.12 -0.95 -66.18 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: -0.87 Total: 28.97 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 4.74 Total: -9.50 kcal Atomic # 7 Polarization: -104.43 SS G_CDS: -6.80 Total: -111.23 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.05 Total: -20.44 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -65.23 -0.95 -66.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159818.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.464 kcal (2) G-P(sol) polarization free energy of solvation -65.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds