Wall clock time and date at job start Wed Apr 1 2020 04:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46967 * 2 1 4 4 H 1.08995 * 109.47123 * 302.62903 * 3 2 1 5 5 C 1.50700 * 109.47128 * 62.62941 * 3 2 1 6 6 H 1.08005 * 119.99828 * 85.53317 * 5 3 2 7 7 C 1.37872 * 120.00089 * 265.52904 * 5 3 2 8 8 N 1.31513 * 120.00045 * 358.87903 * 7 5 3 9 9 Si 1.86802 * 119.99897 * 178.88152 * 7 5 3 10 10 H 1.48495 * 109.47574 * 90.00149 * 9 7 5 11 11 H 1.48503 * 109.47006 * 209.99744 * 9 7 5 12 12 H 1.48496 * 109.47398 * 329.99683 * 9 7 5 13 13 N 1.46899 * 109.46878 * 182.62958 * 3 2 1 14 14 C 1.47014 * 110.99853 * 302.15576 * 13 3 2 15 15 C 1.53106 * 109.26884 * 182.41959 * 14 13 3 16 16 O 1.43028 * 109.24044 * 303.10763 * 15 14 13 17 17 C 1.42950 * 113.74520 * 58.59563 * 16 15 14 18 18 C 1.53059 * 109.46707 * 181.44688 * 17 16 15 19 19 C 1.53128 * 109.14387 * 297.61585 * 18 17 16 20 20 C 1.53036 * 109.26689 * 302.40371 * 19 18 17 21 21 N 1.46848 * 109.55596 * 59.18564 * 20 19 18 22 22 C 1.39706 * 111.00421 * 174.16524 * 21 20 19 23 23 C 1.39315 * 120.48911 * 304.47524 * 22 21 20 24 24 C 1.38498 * 118.35196 * 180.26138 * 23 22 21 25 25 C 1.38266 * 119.24462 * 359.46491 * 24 23 22 26 26 N 1.31857 * 120.93004 * 0.27792 * 25 24 23 27 27 C 1.31818 * 121.79737 * 359.97438 * 26 25 24 28 28 C 1.46860 * 111.18856 * 298.25994 * 21 20 19 29 29 C 1.47019 * 111.00108 * 65.78965 * 13 3 2 30 30 H 1.09000 * 109.46801 * 55.21911 * 1 2 3 31 31 H 1.08997 * 109.47067 * 175.21874 * 1 2 3 32 32 H 1.08996 * 109.47273 * 295.22567 * 1 2 3 33 33 H 1.08994 * 109.47285 * 239.99895 * 2 1 3 34 34 H 1.08998 * 109.46800 * 119.99518 * 2 1 3 35 35 H 0.97003 * 120.00040 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.50839 * 62.48494 * 14 13 3 37 37 H 1.08997 * 109.50631 * 302.35425 * 14 13 3 38 38 H 1.09001 * 109.51175 * 183.17498 * 15 14 13 39 39 H 1.08999 * 109.54721 * 63.05693 * 15 14 13 40 40 H 1.09001 * 109.52685 * 57.51614 * 18 17 16 41 41 H 1.08998 * 109.52609 * 177.71673 * 18 17 16 42 42 H 1.08998 * 109.50846 * 62.34078 * 19 18 17 43 43 H 1.09004 * 109.50511 * 182.42457 * 19 18 17 44 44 H 1.09005 * 109.45925 * 299.16061 * 20 19 18 45 45 H 1.08998 * 109.46162 * 179.21105 * 20 19 18 46 46 H 1.08002 * 120.82402 * 0.02570 * 23 22 21 47 47 H 1.08002 * 120.37580 * 179.74140 * 24 23 22 48 48 H 1.08005 * 119.53966 * 180.25307 * 25 24 23 49 49 H 1.07998 * 119.67383 * 179.97438 * 27 26 25 50 50 H 1.09004 * 109.46856 * 181.68053 * 28 21 20 51 51 H 1.09007 * 109.46341 * 301.65665 * 28 21 20 52 52 H 1.09002 * 109.50638 * 57.77478 * 29 13 3 53 53 H 1.09001 * 109.50713 * 297.65327 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6387 1.9698 -0.8654 5 6 1.5916 2.1339 1.2618 6 1 2.1783 2.0445 2.1642 7 6 0.4325 2.8804 1.2641 8 7 -0.2702 3.0074 0.1597 9 14 -0.1399 3.7116 2.8361 10 1 0.4438 5.0747 2.9162 11 1 -1.6218 3.8072 2.8342 12 1 0.3032 2.9139 4.0075 13 7 3.5076 1.4430 -0.0635 14 6 4.0840 0.6950 1.0632 15 6 5.6114 0.7716 0.9920 16 8 6.0502 0.2675 -0.2725 17 6 5.5076 0.9711 -1.3923 18 6 6.0100 0.3314 -2.6889 19 6 7.5345 0.4591 -2.7540 20 6 7.9217 1.9370 -2.6653 21 7 7.4189 2.5021 -1.4066 22 6 7.8670 3.8139 -1.2324 23 6 9.2288 4.1057 -1.2639 24 6 9.6242 5.4204 -1.0807 25 6 8.6621 6.3941 -0.8853 26 7 7.3802 6.0860 -0.8660 27 6 6.9610 4.8472 -1.0312 28 6 5.9533 2.4336 -1.3420 29 6 3.9797 0.8995 -1.3454 30 1 -0.3633 0.5862 -0.8441 31 1 -0.3633 -1.0241 -0.0857 32 1 -0.3633 0.4380 0.9296 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 -1.0855 3.5330 0.1613 36 1 3.7689 -0.3470 1.0076 37 1 3.7412 1.1299 2.0021 38 1 6.0438 0.1717 1.7929 39 1 5.9301 1.8082 1.1010 40 1 5.7315 -0.7223 -2.7070 41 1 5.5649 0.8415 -3.5431 42 1 7.9812 -0.0847 -1.9216 43 1 7.8947 0.0437 -3.6952 44 1 7.4861 2.4776 -3.5056 45 1 9.0072 2.0306 -2.6972 46 1 9.9584 3.3256 -1.4235 47 1 10.6718 5.6827 -1.0948 48 1 8.9649 7.4214 -0.7460 49 1 5.9026 4.6335 -1.0088 50 1 5.6091 2.8864 -0.4121 51 1 5.5269 2.9727 -2.1880 52 1 3.5626 1.4851 -2.1647 53 1 3.6609 -0.1385 -1.4402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167906.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:22 Heat of formation + Delta-G solvation = -4.909038 kcal Electronic energy + Delta-G solvation = -32626.005416 eV Core-core repulsion = 28690.090338 eV Total energy + Delta-G solvation = -3935.915079 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.05890 -40.85401 -38.90301 -37.42013 -34.93552 -34.62548 -33.23616 -32.83817 -32.24943 -30.40866 -29.56608 -28.50142 -26.22977 -25.99572 -24.77536 -24.59736 -23.65766 -22.89617 -22.10743 -20.78532 -20.04603 -18.68514 -18.32507 -17.51514 -17.45878 -16.96501 -16.61289 -16.27816 -16.02144 -15.86054 -15.56876 -15.48330 -15.19698 -15.16914 -15.01942 -14.67442 -14.51874 -14.16985 -14.05641 -13.85053 -13.68212 -13.37305 -13.14889 -12.81598 -12.79932 -12.77244 -12.69652 -12.55955 -12.39634 -12.20840 -11.95679 -11.80206 -11.72219 -11.56168 -11.45797 -11.28299 -10.95992 -10.86802 -10.53284 -10.48873 -10.29756 -10.23276 -8.90447 -8.81538 -8.07987 -6.13976 0.20066 0.37898 1.39850 1.43079 1.49912 2.43447 2.51175 2.84575 2.98402 3.09390 3.42338 3.63086 3.68005 3.75005 3.92973 3.95230 4.00055 4.08145 4.17124 4.22351 4.26102 4.37658 4.40762 4.42699 4.47234 4.51042 4.56257 4.58272 4.68301 4.71124 4.72297 4.78151 4.80192 4.84435 4.92192 5.00529 5.02393 5.08055 5.12937 5.14603 5.21682 5.25796 5.29965 5.42571 5.44998 5.63890 5.64715 5.73074 5.80789 5.90322 6.13415 6.17075 6.34439 6.54207 6.73124 6.96668 7.09664 7.51203 8.99522 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011216 B = 0.003796 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.865302 B = 7374.919282 C = 9047.981955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.129 4.129 3 C 0.211 3.789 4 H 0.033 0.967 5 C -0.505 4.505 6 H 0.050 0.950 7 C 0.028 3.972 8 N -0.912 5.912 9 Si 0.940 3.060 10 H -0.283 1.283 11 H -0.285 1.285 12 H -0.270 1.270 13 N -0.535 5.535 14 C 0.028 3.972 15 C 0.074 3.926 16 O -0.367 6.367 17 C 0.134 3.866 18 C -0.109 4.109 19 C -0.104 4.104 20 C 0.056 3.944 21 N -0.476 5.476 22 C 0.063 3.937 23 C -0.102 4.102 24 C -0.134 4.134 25 C 0.050 3.950 26 N -0.497 5.497 27 C 0.024 3.976 28 C 0.046 3.954 29 C 0.031 3.969 30 H 0.036 0.964 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.035 0.965 34 H 0.041 0.959 35 H 0.259 0.741 36 H 0.029 0.971 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.045 0.955 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.043 0.957 45 H 0.101 0.899 46 H 0.160 0.840 47 H 0.174 0.826 48 H 0.176 0.824 49 H 0.137 0.863 50 H 0.076 0.924 51 H 0.045 0.955 52 H 0.067 0.933 53 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.835 -3.018 -6.986 22.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.169 4.169 3 C 0.104 3.896 4 H 0.051 0.949 5 C -0.543 4.543 6 H 0.068 0.932 7 C -0.171 4.171 8 N -0.551 5.551 9 Si 0.767 3.233 10 H -0.210 1.210 11 H -0.211 1.211 12 H -0.195 1.195 13 N -0.258 5.258 14 C -0.101 4.101 15 C -0.003 4.003 16 O -0.285 6.285 17 C 0.094 3.906 18 C -0.147 4.147 19 C -0.142 4.142 20 C -0.069 4.069 21 N -0.190 5.190 22 C -0.038 4.038 23 C -0.131 4.131 24 C -0.154 4.154 25 C -0.109 4.109 26 N -0.206 5.206 27 C -0.136 4.136 28 C -0.081 4.081 29 C -0.099 4.099 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.127 0.873 39 H 0.063 0.937 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.118 0.882 44 H 0.061 0.939 45 H 0.120 0.880 46 H 0.178 0.822 47 H 0.191 0.809 48 H 0.193 0.807 49 H 0.154 0.846 50 H 0.094 0.906 51 H 0.063 0.937 52 H 0.086 0.914 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 20.500 -2.314 -6.557 21.647 hybrid contribution -1.529 -0.066 0.430 1.589 sum 18.971 -2.380 -6.127 20.077 Atomic orbital electron populations 1.21277 0.95841 0.97994 1.01367 1.22059 0.96806 0.99934 0.98105 1.19322 0.81897 0.91228 0.97123 0.94935 1.21176 1.06801 1.30256 0.96082 0.93180 1.25447 0.97066 0.96420 0.98206 1.70035 1.16245 1.41241 1.27576 0.85837 0.77243 0.78940 0.81259 1.20976 1.21078 1.19457 1.62656 1.10345 1.51938 1.00877 1.22633 0.95431 0.95928 0.96090 1.22599 0.92252 0.99337 0.86145 1.87921 1.69994 1.57106 1.13528 1.21469 0.90496 0.90266 0.88362 1.21650 0.97459 1.01803 0.93760 1.21511 0.94308 0.94714 1.03631 1.22409 1.01455 0.95879 0.87120 1.58933 1.10422 1.14680 1.34982 1.20158 0.95265 0.88934 0.99441 1.21561 0.93381 0.98208 0.99915 1.22402 1.02560 0.92423 0.98048 1.23180 0.87607 1.01655 0.98417 1.67526 1.20173 1.21086 1.11773 1.22944 0.99967 0.88219 1.02434 1.22537 0.85794 0.97739 1.02013 1.22699 0.95273 0.98174 0.93713 0.94446 0.94149 0.94365 0.94675 0.94043 0.93220 0.95285 0.91047 0.87339 0.93661 0.90352 0.89788 0.91007 0.88227 0.93915 0.88050 0.82212 0.80874 0.80713 0.84597 0.90593 0.93701 0.91416 0.94604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.80 8.69 71.98 0.63 -4.18 16 2 C -0.13 -5.69 4.68 30.60 0.14 -5.55 16 3 C 0.21 10.21 1.99 44.17 0.09 10.30 16 4 H 0.03 1.82 7.27 -2.39 -0.02 1.80 16 5 C -0.50 -26.81 7.50 25.60 0.19 -26.62 16 6 H 0.05 2.68 6.11 -2.91 -0.02 2.66 16 7 C 0.03 1.54 4.39 84.65 0.37 1.91 16 8 N -0.91 -51.30 11.56 21.45 0.25 -51.05 16 9 Si 0.94 43.79 29.54 68.60 2.03 45.82 16 10 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 13 N -0.53 -22.19 4.10 -874.49 -3.58 -25.77 16 14 C 0.03 1.04 4.91 86.32 0.42 1.47 16 15 C 0.07 2.35 6.61 72.02 0.48 2.82 16 16 O -0.37 -11.35 9.61 -148.98 -1.43 -12.79 16 17 C 0.13 3.91 0.70 -10.77 -0.01 3.90 16 18 C -0.11 -2.39 5.01 30.66 0.15 -2.24 16 19 C -0.10 -1.82 5.94 30.65 0.18 -1.64 16 20 C 0.06 1.03 5.26 86.33 0.45 1.49 16 21 N -0.48 -11.85 4.59 -695.05 -3.19 -15.04 16 22 C 0.06 1.60 5.66 38.30 0.22 1.81 16 23 C -0.10 -1.94 9.29 22.59 0.21 -1.73 16 24 C -0.13 -2.22 10.10 22.34 0.23 -1.99 16 25 C 0.05 1.08 11.18 84.70 0.95 2.03 16 26 N -0.50 -15.05 10.35 -195.29 -2.02 -17.07 16 27 C 0.02 0.73 10.01 84.85 0.85 1.57 16 28 C 0.05 1.38 2.47 86.30 0.21 1.59 16 29 C 0.03 1.08 4.03 86.29 0.35 1.42 16 30 H 0.04 1.79 7.78 -2.39 -0.02 1.77 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.87 6.72 -2.39 -0.02 1.85 16 33 H 0.03 1.43 6.48 -2.39 -0.02 1.41 16 34 H 0.04 1.80 6.58 -2.39 -0.02 1.78 16 35 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 36 H 0.03 1.11 6.47 -2.39 -0.02 1.09 16 37 H 0.07 2.94 6.19 -2.39 -0.01 2.92 16 38 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 39 H 0.05 1.54 6.49 -2.39 -0.02 1.53 16 40 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.07 1.44 7.80 -2.39 -0.02 1.42 16 43 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 44 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.10 1.42 6.75 -2.39 -0.02 1.41 16 46 H 0.16 2.15 7.22 -2.91 -0.02 2.13 16 47 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 48 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 49 H 0.14 4.68 5.83 -2.91 -0.02 4.67 16 50 H 0.08 2.73 4.99 -2.38 -0.01 2.72 16 51 H 0.04 1.37 7.75 -2.38 -0.02 1.35 16 52 H 0.07 2.44 8.13 -2.39 -0.02 2.42 16 53 H 0.04 1.28 6.52 -2.39 -0.02 1.26 16 Total: -1.00 -63.74 387.82 -0.94 -64.68 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.90 Total: 24.85 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 6.11 Total: -13.62 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -8.55 Total: -108.94 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -1.43 Total: -12.79 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -63.74 -0.94 -64.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167906.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.770 kcal (2) G-P(sol) polarization free energy of solvation -63.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds