Wall clock time and date at job start Wed Apr 1 2020 04:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47071 * 2 1 4 4 H 1.09003 * 109.47075 * 303.09195 * 3 2 1 5 5 C 1.50698 * 109.47201 * 183.09094 * 3 2 1 6 6 H 1.08007 * 119.99745 * 245.18341 * 5 3 2 7 7 C 1.37875 * 120.00227 * 65.18126 * 5 3 2 8 8 N 1.31519 * 119.99649 * 6.73268 * 7 5 3 9 9 Si 1.86793 * 120.00206 * 186.72705 * 7 5 3 10 10 H 1.48503 * 109.47274 * 88.22169 * 9 7 5 11 11 H 1.48500 * 109.47281 * 208.22511 * 9 7 5 12 12 H 1.48503 * 109.47368 * 328.22378 * 9 7 5 13 13 N 1.46903 * 109.47195 * 63.08833 * 3 2 1 14 14 C 1.47009 * 111.00101 * 66.04733 * 13 3 2 15 15 C 1.53095 * 109.28662 * 182.39640 * 14 13 3 16 16 O 1.43024 * 109.28078 * 303.10398 * 15 14 13 17 17 C 1.43047 * 113.67298 * 58.57759 * 16 15 14 18 18 C 1.53052 * 109.47367 * 181.40239 * 17 16 15 19 19 C 1.53141 * 109.14618 * 297.62899 * 18 17 16 20 20 C 1.53034 * 109.27198 * 302.42217 * 19 18 17 21 21 N 1.46853 * 109.55842 * 59.17795 * 20 19 18 22 22 C 1.39703 * 110.99948 * 174.16072 * 21 20 19 23 23 C 1.39314 * 120.49364 * 303.91405 * 22 21 20 24 24 C 1.38502 * 118.35231 * 179.71648 * 23 22 21 25 25 C 1.38268 * 119.24343 * 0.58084 * 24 23 22 26 26 N 1.31856 * 120.92934 * 359.68212 * 25 24 23 27 27 C 1.31814 * 121.79841 * 0.02562 * 26 25 24 28 28 C 1.46858 * 111.18259 * 298.25435 * 21 20 19 29 29 C 1.47036 * 110.99975 * 189.68455 * 13 3 2 30 30 H 1.09005 * 109.46960 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47346 * 299.99751 * 1 2 3 32 32 H 1.08997 * 109.46893 * 60.00128 * 1 2 3 33 33 H 1.08994 * 109.47015 * 239.99608 * 2 1 3 34 34 H 1.08999 * 109.46834 * 119.99333 * 2 1 3 35 35 H 0.96997 * 119.99477 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.49991 * 62.45389 * 14 13 3 37 37 H 1.08998 * 109.49995 * 302.33985 * 14 13 3 38 38 H 1.09003 * 109.50740 * 63.05430 * 15 14 13 39 39 H 1.08999 * 109.51090 * 183.14793 * 15 14 13 40 40 H 1.09000 * 109.52590 * 57.52769 * 18 17 16 41 41 H 1.08996 * 109.52432 * 177.73166 * 18 17 16 42 42 H 1.09002 * 109.50025 * 182.48720 * 19 18 17 43 43 H 1.08999 * 109.50570 * 62.36175 * 19 18 17 44 44 H 1.09004 * 109.46054 * 299.14955 * 20 19 18 45 45 H 1.09005 * 109.44314 * 179.19807 * 20 19 18 46 46 H 1.07994 * 120.82171 * 359.97438 * 23 22 21 47 47 H 1.07997 * 120.37239 * 180.26334 * 24 23 22 48 48 H 1.08004 * 119.53593 * 179.70000 * 25 24 23 49 49 H 1.08002 * 119.67478 * 180.02562 * 27 26 25 50 50 H 1.09005 * 109.46132 * 301.66888 * 28 21 20 51 51 H 1.09000 * 109.46198 * 181.68808 * 28 21 20 52 52 H 1.09001 * 109.50111 * 297.63680 * 29 13 3 53 53 H 1.09001 * 109.50610 * 57.77273 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6321 1.9721 -0.8610 5 6 3.5450 1.4432 -0.0766 6 1 4.1277 1.8207 0.7508 7 6 4.1783 0.9619 -1.2028 8 7 3.4729 0.6260 -2.2608 9 14 6.0379 0.7872 -1.2260 10 1 6.4162 -0.5488 -0.6994 11 1 6.5309 0.9276 -2.6197 12 1 6.6450 1.8438 -0.3774 13 7 1.6122 2.1131 1.2350 14 6 2.2589 1.5136 2.4113 15 6 1.7413 2.2004 3.6778 16 8 1.9851 3.6067 3.5857 17 6 1.3707 4.2230 2.4505 18 6 1.7207 5.7128 2.4269 19 6 1.1542 6.3817 3.6826 20 6 -0.3585 6.1565 3.7362 21 7 -0.6405 4.7154 3.7583 22 6 -2.0046 4.4750 3.9398 23 6 -2.6750 5.0021 5.0414 24 6 -4.0287 4.7409 5.1744 25 6 -4.6628 3.9619 4.2243 26 7 -3.9986 3.4729 3.1956 27 6 -2.7114 3.7018 3.0277 28 6 -0.1477 4.0595 2.5403 29 6 1.8824 3.5571 1.1713 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 3.9184 0.2870 -3.0530 36 1 3.3384 1.6467 2.3404 37 1 2.0247 0.4499 2.4525 38 1 0.6705 2.0223 3.7768 39 1 2.2593 1.7974 4.5481 40 1 2.8039 5.8323 2.4076 41 1 1.2863 6.1750 1.5405 42 1 1.3620 7.4513 3.6503 43 1 1.6185 5.9467 4.5676 44 1 -0.8237 6.6040 2.8578 45 1 -0.7626 6.6194 4.6365 46 1 -2.1530 5.6031 5.7712 47 1 -4.5813 5.1369 6.0135 48 1 -5.7172 3.7511 4.3260 49 1 -2.2012 3.2845 2.1721 50 1 -0.6144 4.5164 1.6676 51 1 -0.3976 2.9990 2.5724 52 1 2.9557 3.7227 1.0790 53 1 1.3717 3.9851 0.3086 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167907.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:27 Heat of formation + Delta-G solvation = -7.616191 kcal Electronic energy + Delta-G solvation = -32767.255634 eV Core-core repulsion = 28831.223164 eV Total energy + Delta-G solvation = -3936.032470 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.02706 -40.80361 -38.84971 -37.35974 -34.91596 -34.48645 -33.26002 -33.11518 -32.13598 -30.39338 -29.71095 -28.30808 -26.33807 -25.97942 -24.74290 -24.52388 -23.58573 -22.91984 -21.75268 -20.80297 -20.25816 -18.63527 -18.34996 -17.51769 -17.40260 -17.06860 -16.60498 -16.38831 -16.12139 -15.87626 -15.56395 -15.47483 -15.20817 -15.04693 -14.76157 -14.55845 -14.47653 -14.04875 -13.88748 -13.83513 -13.66170 -13.32799 -13.24289 -13.11149 -12.86193 -12.74359 -12.66263 -12.57629 -12.38595 -12.14245 -11.92459 -11.83938 -11.62052 -11.61281 -11.45903 -11.25077 -11.14987 -10.87205 -10.51006 -10.46621 -10.28578 -10.20263 -8.97556 -8.87216 -8.09399 -6.27194 0.23232 0.40537 1.33892 1.36670 1.44133 2.37741 2.53426 2.87813 3.02082 3.12927 3.25859 3.65903 3.70186 3.75949 3.95776 3.98313 4.02011 4.09970 4.19801 4.25556 4.32647 4.38256 4.43133 4.46822 4.52501 4.58718 4.61849 4.69254 4.69840 4.71216 4.73874 4.83118 4.86963 4.91260 4.98195 5.01247 5.04511 5.11561 5.17392 5.22680 5.25436 5.28668 5.36572 5.44523 5.45750 5.60228 5.66279 5.74392 5.91299 5.92662 6.14794 6.19995 6.29789 6.37797 6.56106 6.92363 7.11981 7.42751 8.89398 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.003422 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.188268 B = 8180.259713 C = 9278.967228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.096 4.096 3 C 0.221 3.779 4 H 0.009 0.991 5 C -0.552 4.552 6 H 0.049 0.951 7 C 0.026 3.974 8 N -0.911 5.911 9 Si 0.941 3.059 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.275 1.275 13 N -0.520 5.520 14 C 0.026 3.974 15 C 0.074 3.926 16 O -0.371 6.371 17 C 0.134 3.866 18 C -0.111 4.111 19 C -0.104 4.104 20 C 0.058 3.942 21 N -0.477 5.477 22 C 0.062 3.938 23 C -0.104 4.104 24 C -0.136 4.136 25 C 0.051 3.949 26 N -0.493 5.493 27 C 0.027 3.973 28 C 0.048 3.952 29 C 0.044 3.956 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.033 0.967 33 H 0.044 0.956 34 H 0.036 0.964 35 H 0.261 0.739 36 H 0.023 0.977 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.105 0.895 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.070 0.930 44 H 0.044 0.956 45 H 0.101 0.899 46 H 0.156 0.844 47 H 0.171 0.829 48 H 0.176 0.824 49 H 0.144 0.856 50 H 0.049 0.951 51 H 0.084 0.916 52 H 0.023 0.977 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.878 12.018 15.947 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.135 4.135 3 C 0.114 3.886 4 H 0.027 0.973 5 C -0.591 4.591 6 H 0.067 0.933 7 C -0.175 4.175 8 N -0.550 5.550 9 Si 0.767 3.233 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.200 1.200 13 N -0.244 5.244 14 C -0.103 4.103 15 C -0.003 4.003 16 O -0.290 6.290 17 C 0.094 3.906 18 C -0.149 4.149 19 C -0.141 4.141 20 C -0.066 4.066 21 N -0.191 5.191 22 C -0.039 4.039 23 C -0.132 4.132 24 C -0.156 4.156 25 C -0.108 4.108 26 N -0.202 5.202 27 C -0.133 4.133 28 C -0.079 4.079 29 C -0.086 4.086 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.123 0.877 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.115 0.885 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.119 0.881 46 H 0.174 0.826 47 H 0.188 0.812 48 H 0.193 0.807 49 H 0.161 0.839 50 H 0.067 0.933 51 H 0.102 0.898 52 H 0.041 0.959 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.359 11.309 15.701 22.960 hybrid contribution 2.271 -0.065 -1.195 2.567 sum -10.088 11.243 14.506 20.943 Atomic orbital electron populations 1.21559 0.96003 0.99903 1.00799 1.21334 0.94668 0.98020 0.99449 1.19035 0.91590 0.91332 0.86637 0.97342 1.21928 0.93989 1.41672 1.01462 0.93317 1.25554 1.01539 0.95234 0.95132 1.70049 1.36725 1.44441 1.03745 0.85835 0.81869 0.78477 0.77096 1.20189 1.20981 1.19970 1.62676 1.56322 1.01868 1.03501 1.22637 0.96784 0.99513 0.91347 1.22620 1.00207 0.80825 0.96630 1.87952 1.74252 1.21252 1.45563 1.21484 0.90556 0.93704 0.84844 1.21644 1.02075 0.91247 0.99936 1.21503 0.93658 1.01297 0.97672 1.22373 0.97444 0.84361 1.02467 1.58902 1.10642 1.13068 1.36513 1.20161 0.88926 0.98852 0.95953 1.21543 0.94868 1.00583 0.96197 1.22381 0.94561 0.97911 1.00725 1.23158 1.01355 0.95599 0.90661 1.67538 1.08901 1.20685 1.23062 1.22987 0.90503 1.00807 0.98979 1.22539 0.95249 1.00345 0.89738 1.22474 0.98475 0.90106 0.97523 0.93556 0.92319 0.94810 0.93754 0.94496 0.92942 0.95863 0.90677 0.92719 0.87735 0.91280 0.89799 0.88503 0.91161 0.93760 0.88110 0.82595 0.81171 0.80741 0.83915 0.93287 0.89776 0.95917 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.91 9.78 71.98 0.70 -4.21 16 2 C -0.10 -4.46 5.16 30.59 0.16 -4.30 16 3 C 0.22 10.77 1.60 44.17 0.07 10.84 16 4 H 0.01 0.48 8.02 -2.39 -0.02 0.46 16 5 C -0.55 -29.49 7.11 25.60 0.18 -29.31 16 6 H 0.05 2.66 5.80 -2.91 -0.02 2.64 16 7 C 0.03 1.41 5.22 84.65 0.44 1.85 16 8 N -0.91 -52.00 12.01 21.45 0.26 -51.74 16 9 Si 0.94 43.66 29.54 68.60 2.03 45.68 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 13 N -0.52 -20.96 3.44 -874.47 -3.01 -23.97 16 14 C 0.03 0.98 5.00 86.31 0.43 1.41 16 15 C 0.07 2.32 6.61 72.01 0.48 2.79 16 16 O -0.37 -11.96 9.62 -148.98 -1.43 -13.39 16 17 C 0.13 4.02 0.70 -10.77 -0.01 4.01 16 18 C -0.11 -2.69 5.02 30.66 0.15 -2.53 16 19 C -0.10 -1.94 5.94 30.65 0.18 -1.76 16 20 C 0.06 1.06 5.26 86.32 0.45 1.51 16 21 N -0.48 -11.17 4.59 -695.03 -3.19 -14.36 16 22 C 0.06 1.43 5.65 38.30 0.22 1.64 16 23 C -0.10 -1.81 9.29 22.59 0.21 -1.60 16 24 C -0.14 -2.01 10.10 22.34 0.23 -1.79 16 25 C 0.05 0.97 11.18 84.70 0.95 1.92 16 26 N -0.49 -13.16 10.35 -195.29 -2.02 -15.18 16 27 C 0.03 0.72 10.01 84.85 0.85 1.57 16 28 C 0.05 1.34 2.46 86.31 0.21 1.55 16 29 C 0.04 1.65 4.12 86.28 0.36 2.01 16 30 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.06 2.18 7.69 -2.39 -0.02 2.16 16 32 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 33 H 0.04 2.33 6.70 -2.39 -0.02 2.31 16 34 H 0.04 1.66 6.37 -2.39 -0.02 1.64 16 35 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 36 H 0.02 1.00 6.15 -2.39 -0.01 0.99 16 37 H 0.07 2.85 6.31 -2.39 -0.02 2.84 16 38 H 0.05 1.69 6.48 -2.39 -0.02 1.68 16 39 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 40 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.07 1.51 7.80 -2.39 -0.02 1.49 16 44 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.10 1.40 6.78 -2.38 -0.02 1.38 16 46 H 0.16 1.99 7.25 -2.91 -0.02 1.97 16 47 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 48 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 49 H 0.14 4.15 5.83 -2.91 -0.02 4.13 16 50 H 0.05 1.36 7.75 -2.38 -0.02 1.34 16 51 H 0.08 2.65 4.98 -2.39 -0.01 2.64 16 52 H 0.02 0.98 7.29 -2.39 -0.02 0.96 16 53 H 0.07 2.52 8.09 -2.39 -0.02 2.50 16 Total: -1.00 -63.65 391.79 -0.21 -63.87 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.90 Total: 23.49 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 6.26 Total: -14.39 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -7.96 Total: -105.25 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -1.43 Total: -13.39 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -63.65 -0.21 -63.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167907.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.250 kcal (2) G-P(sol) polarization free energy of solvation -63.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds