Wall clock time and date at job start Wed Apr 1 2020 04:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47072 * 2 1 4 4 H 1.09001 * 109.47591 * 179.17377 * 3 2 1 5 5 C 1.50702 * 109.46994 * 299.17165 * 3 2 1 6 6 H 1.08000 * 120.00006 * 115.45767 * 5 3 2 7 7 C 1.37876 * 120.00088 * 295.45381 * 5 3 2 8 8 N 1.31520 * 119.99867 * 354.36529 * 7 5 3 9 9 Si 1.86796 * 120.00172 * 174.36401 * 7 5 3 10 10 H 1.48502 * 109.47246 * 270.00245 * 9 7 5 11 11 H 1.48504 * 109.47369 * 30.00148 * 9 7 5 12 12 H 1.48502 * 109.47402 * 150.00176 * 9 7 5 13 13 N 1.46900 * 109.47250 * 59.16886 * 3 2 1 14 14 C 1.47018 * 110.99734 * 55.48420 * 13 3 2 15 15 C 1.53098 * 109.28666 * 182.39326 * 14 13 3 16 16 O 1.43027 * 109.24071 * 303.13015 * 15 14 13 17 17 C 1.42951 * 113.71712 * 58.61183 * 16 15 14 18 18 C 1.53067 * 109.45789 * 61.33297 * 17 16 15 19 19 C 1.53131 * 109.14393 * 62.39315 * 18 17 16 20 20 C 1.53044 * 109.25551 * 57.60340 * 19 18 17 21 21 N 1.46842 * 109.55914 * 300.81064 * 20 19 18 22 22 C 1.39713 * 110.99798 * 185.83467 * 21 20 19 23 23 C 1.39309 * 120.49233 * 55.77109 * 22 21 20 24 24 C 1.38500 * 118.35530 * 179.71349 * 23 22 21 25 25 C 1.38276 * 119.23795 * 0.58203 * 24 23 22 26 26 N 1.31856 * 120.93309 * 359.67389 * 25 24 23 27 27 C 1.31814 * 121.79469 * 0.03152 * 26 25 24 28 28 C 1.46860 * 111.19618 * 61.73608 * 21 20 19 29 29 C 1.47031 * 110.99986 * 179.11001 * 13 3 2 30 30 H 1.08998 * 109.46680 * 185.05047 * 1 2 3 31 31 H 1.08997 * 109.47114 * 305.05594 * 1 2 3 32 32 H 1.08998 * 109.46867 * 65.05643 * 1 2 3 33 33 H 1.09004 * 109.47022 * 239.99969 * 2 1 3 34 34 H 1.08997 * 109.47192 * 119.99930 * 2 1 3 35 35 H 0.96994 * 120.00050 * 354.90867 * 8 7 5 36 36 H 1.09003 * 109.49689 * 302.33622 * 14 13 3 37 37 H 1.08996 * 109.50357 * 62.44935 * 14 13 3 38 38 H 1.09006 * 109.50917 * 183.19687 * 15 14 13 39 39 H 1.09003 * 109.55236 * 63.08574 * 15 14 13 40 40 H 1.08999 * 109.52788 * 182.29549 * 18 17 16 41 41 H 1.09000 * 109.52364 * 302.49839 * 18 17 16 42 42 H 1.08994 * 109.50741 * 177.53655 * 19 18 17 43 43 H 1.08999 * 109.50829 * 297.62820 * 19 18 17 44 44 H 1.08999 * 109.45817 * 60.84125 * 20 19 18 45 45 H 1.09002 * 109.45921 * 180.79988 * 20 19 18 46 46 H 1.07995 * 120.82433 * 359.97438 * 23 22 21 47 47 H 1.07997 * 120.38124 * 180.26062 * 24 23 22 48 48 H 1.08000 * 119.53565 * 179.70213 * 25 24 23 49 49 H 1.08004 * 119.67212 * 180.02562 * 27 26 25 50 50 H 1.09006 * 109.46233 * 178.33333 * 28 21 20 51 51 H 1.09003 * 109.46968 * 58.36289 * 28 21 20 52 52 H 1.08999 * 109.50914 * 297.62734 * 29 13 3 53 53 H 1.09001 * 109.50661 * 57.77446 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 0.0148 5 6 1.5545 2.1469 -1.2406 6 1 0.8733 2.9807 -1.1565 7 6 1.9801 1.7270 -2.4830 8 7 2.8935 0.7859 -2.5818 9 14 1.2593 2.4947 -4.0259 10 1 0.0629 1.7239 -4.4498 11 1 0.8687 3.8994 -3.7439 12 1 2.2732 2.4711 -5.1107 13 7 1.5340 2.1408 1.1892 14 6 1.8985 1.4205 2.4180 15 6 1.3025 2.1478 3.6262 16 8 1.7635 3.5017 3.6358 17 6 1.4265 4.2323 2.4543 18 6 -0.0962 4.2989 2.3129 19 6 -0.6790 5.0559 3.5097 20 6 -0.0554 6.4519 3.5761 21 7 1.4019 6.3334 3.7121 22 6 1.9899 7.5856 3.9076 23 6 1.5785 8.4036 4.9575 24 6 2.1957 9.6336 5.1138 25 6 3.1834 10.0117 4.2231 26 7 3.5466 9.2164 3.2360 27 6 2.9894 8.0357 3.0546 28 6 1.9897 5.6512 2.5521 29 6 2.0222 3.5270 1.2339 30 1 -0.3632 -1.0237 0.0905 31 1 -0.3633 0.5902 0.8412 32 1 -0.3633 0.4334 -0.9318 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.3211 0.4394 -1.7832 36 1 1.5054 0.4047 2.3744 37 1 2.9839 1.3876 2.5121 38 1 1.6175 1.6493 4.5429 39 1 0.2145 2.1342 3.5599 40 1 -0.3541 4.8205 1.3912 41 1 -0.5042 3.2884 2.2873 42 1 -1.7591 5.1449 3.3931 43 1 -0.4556 4.5127 4.4279 44 1 -0.2917 6.9989 2.6634 45 1 -0.4576 6.9887 4.4354 46 1 0.8005 8.0848 5.6353 47 1 1.9053 10.2920 5.9191 48 1 3.6645 10.9718 4.3376 49 1 3.3137 7.4117 2.2349 50 1 3.0726 5.6049 2.6682 51 1 1.7452 6.2024 1.6440 52 1 3.1097 3.5277 1.3078 53 1 1.7179 4.0494 0.3269 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167908.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:32 Heat of formation + Delta-G solvation = -6.805450 kcal Electronic energy + Delta-G solvation = -32463.749832 eV Core-core repulsion = 28527.752518 eV Total energy + Delta-G solvation = -3935.997313 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.07173 -40.97731 -39.01920 -37.68214 -34.82038 -34.61627 -33.42165 -33.03240 -32.34794 -30.35988 -29.84287 -27.71932 -26.63767 -26.00937 -25.08620 -24.59545 -23.50713 -23.10306 -21.87013 -21.00211 -20.19569 -18.81427 -18.67272 -17.59770 -17.31565 -17.19528 -16.79280 -16.24201 -16.00010 -15.78809 -15.68736 -15.63403 -15.50938 -15.10303 -14.92983 -14.72345 -14.61155 -14.17984 -14.06060 -13.88345 -13.60147 -13.35816 -13.21637 -13.11672 -13.01395 -12.77687 -12.67290 -12.49722 -12.22042 -12.00877 -11.97184 -11.93693 -11.85794 -11.69475 -11.55553 -11.29925 -10.98713 -10.61164 -10.55813 -10.44426 -10.34246 -10.24751 -9.10853 -8.94731 -8.53655 -6.25020 0.17348 0.35186 1.52935 1.59979 1.76441 2.43941 2.56798 2.74940 2.86389 3.11084 3.24296 3.59159 3.62572 3.73572 3.83499 3.91805 3.97442 4.03493 4.10751 4.15575 4.18375 4.25198 4.30197 4.33414 4.42983 4.44503 4.48821 4.50087 4.58801 4.62762 4.68379 4.69067 4.71338 4.81324 4.85459 4.88245 4.96529 5.01905 5.05455 5.10652 5.18723 5.20847 5.30193 5.32518 5.38119 5.46539 5.60042 5.68043 5.82534 5.92791 6.03577 6.12636 6.28759 6.38709 6.49453 6.71729 7.05458 7.51710 8.81794 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013344 B = 0.003266 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.893841 B = 8572.299938 C = 9661.312801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.111 4.111 3 C 0.210 3.790 4 H -0.056 1.056 5 C -0.572 4.572 6 H 0.051 0.949 7 C -0.027 4.027 8 N -0.940 5.940 9 Si 1.107 2.893 10 H -0.275 1.275 11 H -0.272 1.272 12 H -0.291 1.291 13 N -0.508 5.508 14 C 0.010 3.990 15 C 0.069 3.931 16 O -0.372 6.372 17 C 0.137 3.863 18 C -0.132 4.132 19 C -0.105 4.105 20 C 0.059 3.941 21 N -0.473 5.473 22 C 0.060 3.940 23 C -0.103 4.103 24 C -0.134 4.134 25 C 0.052 3.948 26 N -0.493 5.493 27 C 0.023 3.977 28 C 0.071 3.929 29 C 0.048 3.952 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.035 0.965 33 H 0.036 0.964 34 H 0.041 0.959 35 H 0.256 0.744 36 H 0.090 0.910 37 H 0.010 0.990 38 H 0.114 0.886 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.043 0.957 45 H 0.103 0.897 46 H 0.158 0.842 47 H 0.173 0.827 48 H 0.177 0.823 49 H 0.145 0.855 50 H 0.075 0.925 51 H 0.064 0.936 52 H 0.003 0.997 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.280 13.620 17.975 24.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.149 4.149 3 C 0.103 3.897 4 H -0.039 1.039 5 C -0.610 4.610 6 H 0.069 0.931 7 C -0.225 4.225 8 N -0.578 5.578 9 Si 0.931 3.069 10 H -0.201 1.201 11 H -0.197 1.197 12 H -0.217 1.217 13 N -0.233 5.233 14 C -0.119 4.119 15 C -0.008 4.008 16 O -0.291 6.291 17 C 0.097 3.903 18 C -0.170 4.170 19 C -0.143 4.143 20 C -0.066 4.066 21 N -0.188 5.188 22 C -0.040 4.040 23 C -0.131 4.131 24 C -0.154 4.154 25 C -0.107 4.107 26 N -0.202 5.202 27 C -0.137 4.137 28 C -0.056 4.056 29 C -0.081 4.081 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.028 0.972 38 H 0.132 0.868 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.111 0.889 43 H 0.091 0.909 44 H 0.061 0.939 45 H 0.122 0.878 46 H 0.175 0.825 47 H 0.190 0.810 48 H 0.194 0.806 49 H 0.163 0.837 50 H 0.094 0.906 51 H 0.082 0.918 52 H 0.021 0.979 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.994 13.532 16.274 22.625 hybrid contribution 0.980 -0.591 0.787 1.389 sum -7.013 12.941 17.061 22.533 Atomic orbital electron populations 1.21308 0.94337 0.99323 1.01526 1.21532 0.97981 0.96863 0.98557 1.19219 0.89531 0.92136 0.88829 1.03861 1.22006 1.29376 1.17726 0.91909 0.93052 1.26928 0.95472 0.95611 1.04499 1.70870 1.26042 1.28342 1.32574 0.83045 0.75638 0.75804 0.72449 1.20058 1.19699 1.21725 1.62220 1.58401 1.01084 1.01575 1.22932 0.97339 0.99815 0.91776 1.22738 0.99194 0.81753 0.97089 1.88021 1.78951 1.23414 1.38668 1.21347 0.95049 0.89961 0.83931 1.21982 0.93741 1.02212 0.99037 1.21541 1.00180 0.94278 0.98304 1.22384 0.83664 0.98427 1.02116 1.58864 1.06173 1.15070 1.38649 1.20164 0.97744 0.89693 0.96436 1.21559 1.01322 0.93901 0.96299 1.22407 0.95820 0.96637 1.00563 1.23185 0.96344 0.99836 0.91298 1.67535 1.26689 1.04505 1.21499 1.22992 0.97630 0.93779 0.99268 1.22082 0.99625 0.92259 0.91650 1.22459 0.95437 0.91409 0.98792 0.93703 0.91962 0.94566 0.94549 0.94054 0.93320 0.89181 0.97181 0.86830 0.91271 0.91865 0.90583 0.88917 0.90868 0.93899 0.87838 0.82458 0.80988 0.80565 0.83737 0.90642 0.91824 0.97870 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.31 9.44 71.98 0.68 -3.63 16 2 C -0.11 -5.03 4.86 30.60 0.15 -4.88 16 3 C 0.21 10.27 1.39 44.17 0.06 10.34 16 4 H -0.06 -3.19 7.55 -2.39 -0.02 -3.20 16 5 C -0.57 -30.40 6.61 25.60 0.17 -30.23 16 6 H 0.05 2.74 6.94 -2.91 -0.02 2.72 16 7 C -0.03 -1.49 5.25 84.65 0.44 -1.05 16 8 N -0.94 -56.28 12.83 21.45 0.28 -56.00 16 9 Si 1.11 49.71 29.91 68.60 2.05 51.76 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 12 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 13 N -0.51 -20.41 3.12 -874.44 -2.73 -23.13 16 14 C 0.01 0.34 5.17 86.31 0.45 0.78 16 15 C 0.07 1.90 6.61 72.01 0.48 2.37 16 16 O -0.37 -11.49 9.61 -148.98 -1.43 -12.92 16 17 C 0.14 4.17 0.70 -10.77 -0.01 4.16 16 18 C -0.13 -3.49 4.36 30.66 0.13 -3.36 16 19 C -0.11 -2.07 5.94 30.65 0.18 -1.89 16 20 C 0.06 1.11 5.26 86.33 0.45 1.56 16 21 N -0.47 -11.19 4.59 -695.07 -3.19 -14.38 16 22 C 0.06 1.38 5.65 38.30 0.22 1.60 16 23 C -0.10 -1.76 9.29 22.59 0.21 -1.55 16 24 C -0.13 -1.92 10.10 22.34 0.23 -1.70 16 25 C 0.05 0.96 11.18 84.70 0.95 1.91 16 26 N -0.49 -12.80 10.35 -195.28 -2.02 -14.82 16 27 C 0.02 0.59 10.00 84.85 0.85 1.44 16 28 C 0.07 1.98 3.13 86.30 0.27 2.25 16 29 C 0.05 1.88 4.11 86.29 0.36 2.23 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 2.32 7.37 -2.39 -0.02 2.30 16 32 H 0.04 1.60 7.43 -2.39 -0.02 1.58 16 33 H 0.04 1.87 6.19 -2.39 -0.01 1.85 16 34 H 0.04 1.68 6.34 -2.39 -0.02 1.67 16 35 H 0.26 15.65 6.06 -92.71 -0.56 15.09 16 36 H 0.09 2.95 6.07 -2.39 -0.01 2.93 16 37 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.11 2.55 8.14 -2.38 -0.02 2.53 16 39 H 0.07 1.76 6.44 -2.39 -0.02 1.75 16 40 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.08 2.19 6.07 -2.39 -0.01 2.17 16 42 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.07 1.52 7.80 -2.39 -0.02 1.51 16 44 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.10 1.46 6.76 -2.39 -0.02 1.45 16 46 H 0.16 1.95 7.23 -2.91 -0.02 1.93 16 47 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 48 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 49 H 0.15 3.91 5.83 -2.91 -0.02 3.89 16 50 H 0.08 2.26 7.02 -2.38 -0.02 2.24 16 51 H 0.06 1.73 7.74 -2.39 -0.02 1.71 16 52 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 53 H 0.07 3.13 6.55 -2.39 -0.02 3.11 16 Total: -1.00 -67.19 389.31 0.32 -66.87 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 1.10 Total: 22.28 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: 6.26 Total: -19.64 kcal Atomic # 7 Polarization: -100.68 SS G_CDS: -7.66 Total: -108.34 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -1.43 Total: -12.92 kcal Atomic # 14 Polarization: 49.71 SS G_CDS: 2.05 Total: 51.76 kcal Total: -67.19 0.32 -66.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167908.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.064 kcal (2) G-P(sol) polarization free energy of solvation -67.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds