Wall clock time and date at job start Wed Apr 1 2020 04:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46624 * 2 1 4 4 H 1.08995 * 109.46516 * 182.76953 * 3 2 1 5 5 C 1.50698 * 109.47193 * 62.77261 * 3 2 1 6 6 H 1.07999 * 120.00053 * 274.76639 * 5 3 2 7 7 C 1.37876 * 119.99976 * 94.76717 * 5 3 2 8 8 N 1.31522 * 119.99626 * 184.00880 * 7 5 3 9 9 Si 1.86793 * 120.00182 * 4.00237 * 7 5 3 10 10 H 1.48507 * 109.46908 * 87.09146 * 9 7 5 11 11 H 1.48496 * 109.47546 * 207.09287 * 9 7 5 12 12 H 1.48504 * 109.47234 * 327.09324 * 9 7 5 13 13 N 1.46901 * 109.46880 * 302.77236 * 3 2 1 14 14 C 1.46851 * 110.99562 * 172.45313 * 13 3 2 15 15 C 1.53056 * 109.50096 * 185.88051 * 14 13 3 16 16 C 1.53048 * 109.26288 * 300.89402 * 15 14 13 17 17 C 1.53029 * 109.29296 * 57.59477 * 16 15 14 18 18 C 1.46849 * 110.99822 * 296.70750 * 13 3 2 19 19 C 1.53011 * 109.53069 * 177.64774 * 16 15 14 20 20 N 1.47031 * 109.24921 * 63.28005 * 19 16 15 21 21 C 1.39002 * 110.99926 * 182.27430 * 20 19 16 22 22 C 1.39142 * 119.70350 * 292.14113 * 21 20 19 23 23 C 1.38302 * 119.09130 * 179.75391 * 22 21 20 24 24 C 1.38884 * 118.50668 * 0.51361 * 23 22 21 25 25 C 1.38023 * 119.33097 * 359.72811 * 24 23 22 26 26 N 1.31974 * 120.85611 * 0.02562 * 25 24 23 27 27 C 1.47013 * 110.75105 * 58.50073 * 20 19 16 28 28 C 1.53092 * 109.32236 * 301.36507 * 27 20 19 29 29 O 1.42940 * 109.49633 * 297.62360 * 16 15 14 30 30 H 1.08996 * 109.47716 * 64.09276 * 1 2 3 31 31 H 1.09001 * 109.46680 * 184.09117 * 1 2 3 32 32 H 1.09001 * 109.47441 * 304.08816 * 1 2 3 33 33 H 1.08994 * 109.47312 * 240.00191 * 2 1 3 34 34 H 1.08998 * 109.47117 * 119.99623 * 2 1 3 35 35 H 0.97002 * 119.99640 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.46858 * 65.87026 * 14 13 3 37 37 H 1.08993 * 109.46412 * 305.88766 * 14 13 3 38 38 H 1.09004 * 109.50783 * 180.95733 * 15 14 13 39 39 H 1.08994 * 109.50985 * 60.82856 * 15 14 13 40 40 H 1.08992 * 109.50578 * 62.36568 * 17 16 15 41 41 H 1.09002 * 109.50786 * 182.49099 * 17 16 15 42 42 H 1.08999 * 109.46083 * 294.15165 * 18 13 3 43 43 H 1.08993 * 109.46261 * 54.12042 * 18 13 3 44 44 H 1.09006 * 109.50487 * 303.35099 * 19 16 15 45 45 H 1.09004 * 109.50838 * 183.22007 * 19 16 15 46 46 H 1.07994 * 120.45098 * 359.97438 * 22 21 20 47 47 H 1.08004 * 120.74544 * 180.21862 * 23 22 21 48 48 H 1.08001 * 120.33526 * 179.70555 * 24 23 22 49 49 H 1.08004 * 119.57058 * 180.02562 * 25 24 23 50 50 H 1.09000 * 109.50010 * 61.32267 * 27 20 19 51 51 H 1.08996 * 109.50193 * 181.40200 * 27 20 19 52 52 H 1.09003 * 109.50922 * 176.81478 * 28 27 20 53 53 H 1.09000 * 109.50803 * 296.95439 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1287 1.4430 -0.0497 5 6 1.5944 2.1329 1.2634 6 1 0.6178 2.5913 1.3127 7 6 2.4337 2.1792 2.3563 8 7 2.0160 2.7117 3.4840 9 14 4.1638 1.4855 2.2354 10 1 5.0822 2.5328 1.7205 11 1 4.6167 1.0477 3.5802 12 1 4.1681 0.3245 1.3094 13 7 1.4962 2.1541 -1.1646 14 6 1.8170 3.5858 -1.1033 15 6 1.1137 4.3164 -2.2497 16 6 1.5759 3.7256 -3.5838 17 6 1.2759 2.2252 -3.6033 18 6 1.9740 1.5551 -2.4173 19 6 0.8328 4.4119 -4.7320 20 7 1.1853 5.8391 -4.7530 21 6 0.4898 6.5093 -5.7527 22 6 0.7692 6.2370 -7.0883 23 6 0.0660 6.9074 -8.0726 24 6 -0.8892 7.8390 -7.6870 25 6 -1.1113 8.0631 -6.3434 26 7 -0.4287 7.4050 -5.4255 27 6 2.6362 6.0150 -4.9120 28 6 3.3607 5.3136 -3.7601 29 8 2.9818 3.9338 -3.7363 30 1 -0.3634 0.4490 -0.9243 31 1 -0.3633 -1.0251 0.0733 32 1 -0.3634 0.5760 0.8511 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.6065 2.7447 4.2528 36 1 2.8948 3.7208 -1.1935 37 1 1.4783 3.9935 -0.1509 38 1 1.3654 5.3765 -2.2145 39 1 0.0351 4.1944 -2.1519 40 1 0.2000 2.0681 -3.5284 41 1 1.6436 1.7925 -4.5337 42 1 3.0511 1.6992 -2.5011 43 1 1.7492 0.4886 -2.4188 44 1 -0.2420 4.3045 -4.5855 45 1 1.1197 3.9519 -5.6777 46 1 1.5223 5.5095 -7.3526 47 1 0.2587 6.7143 -9.1176 48 1 -1.4521 8.3830 -8.4311 49 1 -1.8535 8.7864 -6.0392 50 1 2.9537 5.5804 -5.8599 51 1 2.8773 7.0779 -4.9000 52 1 4.4380 5.3937 -3.9052 53 1 3.0839 5.7833 -2.8162 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255169282.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:34 Heat of formation + Delta-G solvation = -0.284267 kcal Electronic energy + Delta-G solvation = -32177.583145 eV Core-core repulsion = 28241.868611 eV Total energy + Delta-G solvation = -3935.714534 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.06090 -40.83416 -39.08381 -36.89190 -35.66764 -34.05943 -33.43279 -32.87082 -31.72467 -31.31514 -29.91955 -28.52566 -26.95357 -25.16036 -24.84208 -24.32767 -23.72051 -23.19312 -21.88345 -20.69250 -20.13613 -18.81742 -18.53811 -17.49506 -17.29624 -17.13658 -16.94921 -16.27671 -16.24771 -15.91552 -15.69630 -15.54425 -15.18018 -15.11990 -14.90772 -14.74350 -14.52813 -14.46406 -14.06696 -13.91852 -13.52143 -13.23240 -13.07647 -12.98267 -12.92466 -12.77576 -12.74607 -12.52006 -12.43333 -12.10198 -11.97358 -11.83663 -11.73684 -11.54175 -11.37459 -11.13030 -10.86610 -10.76458 -10.73532 -10.65046 -10.45511 -9.93485 -9.38702 -8.84590 -8.24951 -6.24413 0.04750 0.34642 1.29257 1.31751 1.41442 2.31727 2.33594 2.75610 2.77171 3.06348 3.37817 3.64292 3.75161 3.78738 3.86867 3.89098 4.00097 4.04267 4.10751 4.18549 4.28877 4.32444 4.34877 4.42441 4.46953 4.56686 4.57895 4.59178 4.64247 4.69472 4.71141 4.72335 4.78667 4.86738 4.93171 5.01387 5.05735 5.12130 5.13458 5.22549 5.23262 5.27380 5.29997 5.37034 5.43347 5.50663 5.56053 5.71824 5.75217 5.81482 6.09815 6.18931 6.25453 6.47875 6.78642 6.85915 7.15343 7.40017 8.91837 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.018833 B = 0.002794 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.387149 B =10019.993391 C =10197.972670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.106 4.106 3 C 0.184 3.816 4 H -0.013 1.013 5 C -0.479 4.479 6 H 0.039 0.961 7 C 0.014 3.986 8 N -0.947 5.947 9 Si 0.928 3.072 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.248 1.248 13 N -0.526 5.526 14 C 0.080 3.920 15 C -0.115 4.115 16 C 0.129 3.871 17 C -0.091 4.091 18 C 0.054 3.946 19 C 0.059 3.941 20 N -0.513 5.513 21 C 0.286 3.714 22 C -0.203 4.203 23 C -0.065 4.065 24 C -0.170 4.170 25 C 0.095 3.905 26 N -0.508 5.508 27 C 0.039 3.961 28 C 0.057 3.943 29 O -0.383 6.383 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.029 0.971 33 H 0.058 0.942 34 H 0.037 0.963 35 H 0.263 0.737 36 H 0.006 0.994 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.017 0.983 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.062 0.938 46 H 0.142 0.858 47 H 0.165 0.835 48 H 0.169 0.831 49 H 0.177 0.823 50 H 0.063 0.937 51 H 0.089 0.911 52 H 0.119 0.881 53 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.592 6.502 -28.720 29.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.145 4.145 3 C 0.077 3.923 4 H 0.005 0.995 5 C -0.518 4.518 6 H 0.057 0.943 7 C -0.183 4.183 8 N -0.588 5.588 9 Si 0.753 3.247 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.172 1.172 13 N -0.251 5.251 14 C -0.048 4.048 15 C -0.153 4.153 16 C 0.089 3.911 17 C -0.129 4.129 18 C -0.074 4.074 19 C -0.068 4.068 20 N -0.236 5.236 21 C 0.057 3.943 22 C -0.226 4.226 23 C -0.091 4.091 24 C -0.190 4.190 25 C -0.062 4.062 26 N -0.219 5.219 27 C -0.088 4.088 28 C -0.019 4.019 29 O -0.302 6.302 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.024 0.976 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.035 0.965 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.080 0.920 46 H 0.160 0.840 47 H 0.183 0.817 48 H 0.187 0.813 49 H 0.194 0.806 50 H 0.081 0.919 51 H 0.107 0.893 52 H 0.137 0.863 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.212 6.697 -27.190 28.090 hybrid contribution 1.903 -0.022 -0.391 1.943 sum -0.309 6.676 -27.582 28.380 Atomic orbital electron populations 1.21346 0.94925 0.99476 1.01429 1.21608 0.97655 0.96001 0.99196 1.19628 0.91333 0.92494 0.88880 0.99546 1.20953 1.01460 1.33612 0.95780 0.94251 1.25718 1.01774 0.95737 0.95066 1.70039 1.37885 1.47977 1.02931 0.86028 0.81148 0.80013 0.77490 1.20387 1.21256 1.17177 1.61957 1.59479 1.01933 1.01697 1.21656 0.95860 0.89186 0.98099 1.21910 1.00534 0.99130 0.93723 1.21491 0.80827 0.95955 0.92817 1.21544 1.01872 0.91165 0.98278 1.22077 0.96352 0.99315 0.89614 1.22640 1.00793 0.85077 0.98326 1.58680 1.06636 1.11478 1.46777 1.19653 0.93043 0.93262 0.88354 1.22679 1.03074 1.02945 0.93856 1.21918 0.93023 0.93132 1.00998 1.22546 0.99340 0.99406 0.97701 1.23174 0.96757 0.96771 0.89525 1.67271 1.06957 1.06971 1.40665 1.22785 0.84939 1.02025 0.99080 1.22787 1.00171 0.81753 0.97229 1.88023 1.23286 1.25145 1.93729 0.92172 0.93185 0.95169 0.92392 0.94411 0.92799 0.97616 0.93051 0.91339 0.91477 0.89137 0.89049 0.96451 0.89908 0.90091 0.92015 0.84029 0.81703 0.81320 0.80649 0.91907 0.89290 0.86321 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.47 9.52 71.98 0.68 -3.78 16 2 C -0.11 -4.42 5.34 30.60 0.16 -4.26 16 3 C 0.18 8.69 1.39 44.17 0.06 8.75 16 4 H -0.01 -0.64 5.30 -2.39 -0.01 -0.65 16 5 C -0.48 -27.20 6.12 25.60 0.16 -27.04 16 6 H 0.04 2.52 7.81 -2.91 -0.02 2.50 16 7 C 0.01 0.82 5.47 84.65 0.46 1.28 16 8 N -0.95 -59.84 13.96 21.45 0.30 -59.55 16 9 Si 0.93 45.65 27.03 68.60 1.85 47.51 16 10 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 11 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 12 H -0.25 -11.39 6.76 99.48 0.67 -10.72 16 13 N -0.53 -21.68 3.71 -875.43 -3.25 -24.93 16 14 C 0.08 3.41 5.05 86.33 0.44 3.85 16 15 C -0.11 -3.94 4.46 30.63 0.14 -3.81 16 16 C 0.13 3.58 0.69 -10.76 -0.01 3.57 16 17 C -0.09 -2.39 5.11 30.62 0.16 -2.23 16 18 C 0.05 1.81 5.14 86.33 0.44 2.25 16 19 C 0.06 1.38 4.14 86.28 0.36 1.74 16 20 N -0.51 -12.51 4.20 -701.02 -2.94 -15.45 16 21 C 0.29 6.49 5.73 133.07 0.76 7.25 16 22 C -0.20 -3.29 8.66 22.50 0.19 -3.10 16 23 C -0.06 -0.74 10.17 22.44 0.23 -0.51 16 24 C -0.17 -1.89 10.10 22.37 0.23 -1.67 16 25 C 0.10 1.59 11.17 84.62 0.95 2.54 16 26 N -0.51 -12.59 10.40 -193.26 -2.01 -14.60 16 27 C 0.04 0.80 5.29 86.31 0.46 1.26 16 28 C 0.06 1.38 6.62 72.01 0.48 1.86 16 29 O -0.38 -11.00 9.15 -148.98 -1.36 -12.36 16 30 H 0.06 2.21 7.67 -2.39 -0.02 2.19 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.03 1.36 7.09 -2.39 -0.02 1.35 16 33 H 0.06 2.06 6.49 -2.39 -0.02 2.05 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 36 H 0.01 0.25 7.76 -2.39 -0.02 0.23 16 37 H 0.05 2.59 6.57 -2.39 -0.02 2.57 16 38 H 0.07 2.40 6.09 -2.39 -0.01 2.38 16 39 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.02 0.62 7.76 -2.39 -0.02 0.60 16 43 H 0.08 2.55 6.17 -2.39 -0.01 2.53 16 44 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 45 H 0.06 1.24 7.63 -2.38 -0.02 1.22 16 46 H 0.14 1.90 7.01 -2.91 -0.02 1.88 16 47 H 0.17 0.79 8.06 -2.91 -0.02 0.76 16 48 H 0.17 0.69 8.06 -2.91 -0.02 0.66 16 49 H 0.18 2.04 8.06 -2.91 -0.02 2.01 16 50 H 0.06 1.09 6.97 -2.39 -0.02 1.07 16 51 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 52 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 53 H 0.05 1.33 6.45 -2.39 -0.02 1.31 16 Total: -1.00 -72.48 393.96 -0.22 -72.70 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.85 Total: 18.72 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 6.34 Total: -12.04 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -7.90 Total: -114.52 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -1.36 Total: -12.36 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.85 Total: 47.51 kcal Total: -72.48 -0.22 -72.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169282.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.416 kcal (2) G-P(sol) polarization free energy of solvation -72.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds