Wall clock time and date at job start Wed Apr 1 2020 04:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46667 * 2 1 4 4 H 1.09000 * 109.47543 * 304.99946 * 3 2 1 5 5 C 1.50698 * 109.47210 * 185.00224 * 3 2 1 6 6 H 1.08001 * 120.00236 * 240.00233 * 5 3 2 7 7 C 1.37881 * 120.00095 * 59.99679 * 5 3 2 8 8 N 1.31514 * 119.99776 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00107 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46997 * 60.00106 * 9 7 5 11 11 H 1.48503 * 109.47409 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47219 * 299.99948 * 9 7 5 13 13 N 1.46904 * 109.47449 * 65.00138 * 3 2 1 14 14 C 1.46585 * 110.99698 * 66.04359 * 13 3 2 15 15 C 1.53699 * 111.04023 * 179.87178 * 14 13 3 16 16 N 1.45635 * 107.51300 * 303.78106 * 15 14 13 17 17 C 1.46957 * 117.16219 * 180.52868 * 16 15 14 18 18 C 1.55273 * 103.40105 * 197.50303 * 17 16 15 19 19 H 1.08999 * 110.35169 * 265.10332 * 18 17 16 20 20 O 1.42905 * 110.34757 * 142.93088 * 18 17 16 21 21 C 1.42899 * 113.99778 * 92.90068 * 20 18 17 22 22 C 1.50699 * 109.46785 * 179.97438 * 21 20 18 23 23 C 1.38670 * 120.42081 * 90.00022 * 22 21 20 24 24 C 1.38625 * 118.42226 * 179.97438 * 23 22 21 25 25 C 1.38229 * 119.16415 * 359.97438 * 24 23 22 26 26 N 1.31859 * 120.75859 * 0.02562 * 25 24 23 27 27 C 1.31881 * 121.72450 * 359.70464 * 26 25 24 28 28 C 1.55068 * 105.00756 * 24.02020 * 18 17 16 29 29 C 1.48867 * 108.87949 * 63.52212 * 16 15 14 30 30 H 1.08995 * 110.30234 * 51.73070 * 29 16 15 31 31 C 1.47591 * 110.99995 * 192.20128 * 13 3 2 32 32 H 1.09001 * 109.47636 * 299.99600 * 1 2 3 33 33 H 1.09003 * 109.47687 * 60.00139 * 1 2 3 34 34 H 1.09007 * 109.47132 * 180.02562 * 1 2 3 35 35 H 1.08997 * 109.46941 * 240.00578 * 2 1 3 36 36 H 1.08995 * 109.47060 * 119.99808 * 2 1 3 37 37 H 0.97003 * 119.99755 * 180.02562 * 8 7 5 38 38 H 1.09004 * 109.16794 * 59.47526 * 14 13 3 39 39 H 1.09001 * 109.16686 * 300.27634 * 14 13 3 40 40 H 1.09000 * 109.85012 * 184.27415 * 15 14 13 41 41 H 1.09000 * 109.84624 * 63.28108 * 15 14 13 42 42 H 1.09001 * 110.63005 * 79.02154 * 17 16 15 43 43 H 1.08996 * 110.63044 * 315.98477 * 17 16 15 44 44 H 1.08997 * 109.47171 * 299.99768 * 21 20 18 45 45 H 1.08997 * 109.47442 * 59.99964 * 21 20 18 46 46 H 1.08003 * 120.78633 * 0.02590 * 23 22 21 47 47 H 1.08004 * 120.41720 * 180.02562 * 24 23 22 48 48 H 1.07992 * 119.61941 * 179.97438 * 25 24 23 49 49 H 1.08006 * 119.61787 * 180.30857 * 27 26 25 50 50 H 1.09003 * 110.50484 * 121.50237 * 28 18 17 51 51 H 1.09001 * 110.50531 * 244.19966 * 28 18 17 52 52 H 1.09002 * 109.86882 * 296.87313 * 31 13 3 53 53 H 1.08990 * 109.87218 * 57.85169 * 31 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5417 1.4445 -0.1239 6 1 4.1471 1.8891 0.6522 7 6 4.1432 0.8786 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0048 0.8803 -1.3813 10 1 6.5966 0.1456 -0.2344 11 1 6.3978 0.2171 -2.6505 12 1 6.5002 2.2803 -1.3810 13 7 1.6513 2.0993 1.2552 14 6 2.3326 1.4886 2.4005 15 6 1.9291 2.1772 3.7140 16 7 2.2248 3.5963 3.5738 17 6 1.9284 4.4603 4.7250 18 6 1.9150 5.8862 4.1107 19 1 2.8903 6.3586 4.2277 20 8 0.9009 6.6830 4.7262 21 6 1.3620 7.4536 5.8377 22 6 0.2164 8.2509 6.4059 23 6 -0.5814 7.7181 7.4072 24 6 -1.6236 8.4879 7.9002 25 6 -1.8312 9.7522 7.3814 26 7 -1.0522 10.2266 6.4292 27 6 -0.0486 9.5246 5.9402 28 6 1.5957 5.6732 2.6082 29 6 1.3777 4.1597 2.4870 30 1 0.3309 3.9050 2.6528 31 6 1.8645 3.5577 1.1772 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 1.8933 -0.5137 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 3.8292 -0.0609 -2.9500 38 1 3.4104 1.5790 2.2655 39 1 2.0669 0.4328 2.4536 40 1 2.5021 1.7597 4.5419 41 1 0.8630 2.0372 3.8929 42 1 2.7095 4.3747 5.4805 43 1 0.9545 4.2152 5.1484 44 1 1.7560 6.7862 6.6041 45 1 2.1483 8.1325 5.5079 46 1 -0.3947 6.7273 7.7944 47 1 -2.2648 8.1049 8.6804 48 1 -2.6412 10.3580 7.7597 49 1 0.5712 9.9486 5.1638 50 1 0.6908 6.2136 2.3299 51 1 2.4360 5.9901 1.9906 52 1 2.9252 3.7703 1.0434 53 1 1.2960 3.9712 0.3443 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255169589.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:48 Heat of formation + Delta-G solvation = -6.974866 kcal Electronic energy + Delta-G solvation = -30670.847578 eV Core-core repulsion = 26734.842918 eV Total energy + Delta-G solvation = -3936.004660 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.27285 -40.97863 -39.06522 -37.56950 -34.79771 -33.92131 -33.24504 -33.05524 -32.56601 -30.12643 -29.12495 -27.95292 -27.18706 -25.31198 -24.52263 -24.01804 -23.48030 -22.93381 -21.95658 -20.88993 -20.67819 -18.36823 -18.11522 -17.71139 -17.47924 -17.07795 -16.98229 -16.34306 -16.07898 -15.98187 -15.64789 -15.29169 -15.15035 -14.86015 -14.75941 -14.69779 -14.40300 -14.00690 -13.93633 -13.66720 -13.56545 -13.49255 -13.19072 -13.13621 -12.80626 -12.77522 -12.61376 -12.42146 -12.24433 -12.12368 -12.00449 -11.91621 -11.61096 -11.51126 -11.42146 -11.14099 -10.95758 -10.80358 -10.58572 -10.40731 -10.36449 -10.03188 -9.39236 -8.84938 -8.00080 -6.22166 0.07426 0.32537 1.38950 1.39604 1.46946 2.41851 2.48414 2.94746 3.17049 3.21972 3.33491 3.54696 3.61673 3.70823 3.89458 3.90525 4.00638 4.06799 4.08627 4.26751 4.30753 4.40537 4.44470 4.47880 4.50953 4.52452 4.61054 4.67855 4.71690 4.75202 4.75995 4.82710 4.85905 4.90837 4.92336 4.96638 5.01234 5.13243 5.17092 5.19913 5.28731 5.30628 5.33335 5.42412 5.52157 5.66441 5.75422 5.80485 5.84207 6.08523 6.20572 6.22837 6.31783 6.43714 6.72173 6.98428 6.99961 7.47969 8.94228 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.020038 B = 0.002110 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.044156 B =13268.357723 C =13763.396400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C 0.224 3.776 4 H 0.002 0.998 5 C -0.546 4.546 6 H 0.049 0.951 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.945 3.055 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.276 1.276 13 N -0.540 5.540 14 C 0.072 3.928 15 C 0.069 3.931 16 N -0.536 5.536 17 C 0.029 3.971 18 C 0.097 3.903 19 H 0.091 0.909 20 O -0.388 6.388 21 C 0.104 3.896 22 C -0.150 4.150 23 C -0.064 4.064 24 C -0.173 4.173 25 C 0.088 3.912 26 N -0.518 5.518 27 C 0.102 3.898 28 C -0.108 4.108 29 C 0.076 3.924 30 H 0.048 0.952 31 C 0.083 3.917 32 H 0.054 0.946 33 H 0.031 0.969 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.031 0.969 37 H 0.261 0.739 38 H 0.022 0.978 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.037 0.963 42 H 0.095 0.905 43 H 0.046 0.954 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.152 0.848 47 H 0.164 0.836 48 H 0.178 0.822 49 H 0.163 0.837 50 H 0.084 0.916 51 H 0.083 0.917 52 H 0.023 0.977 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.907 14.152 21.269 26.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.117 3.883 4 H 0.020 0.980 5 C -0.585 4.585 6 H 0.067 0.933 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.771 3.229 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.202 1.202 13 N -0.264 5.264 14 C -0.056 4.056 15 C -0.059 4.059 16 N -0.262 5.262 17 C -0.099 4.099 18 C 0.038 3.962 19 H 0.109 0.891 20 O -0.307 6.307 21 C 0.027 3.973 22 C -0.152 4.152 23 C -0.090 4.090 24 C -0.192 4.192 25 C -0.068 4.068 26 N -0.227 5.227 27 C -0.054 4.054 28 C -0.146 4.146 29 C -0.033 4.033 30 H 0.066 0.934 31 C -0.045 4.045 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.040 0.960 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.055 0.945 42 H 0.114 0.886 43 H 0.065 0.935 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.169 0.831 47 H 0.182 0.818 48 H 0.195 0.805 49 H 0.180 0.820 50 H 0.102 0.898 51 H 0.102 0.898 52 H 0.042 0.958 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.192 14.824 20.695 26.453 hybrid contribution 1.475 -1.150 -0.266 1.889 sum -5.717 13.673 20.429 25.238 Atomic orbital electron populations 1.21557 0.96405 0.99736 1.00504 1.21432 0.94376 0.98219 1.00307 1.18985 0.91818 0.91452 0.86065 0.98035 1.21918 0.94058 1.37423 1.05099 0.93269 1.25596 1.01624 0.95085 0.95603 1.69994 1.36204 1.39052 1.09775 0.85822 0.81706 0.78106 0.77234 1.19984 1.20977 1.20197 1.62046 1.57619 1.02698 1.04085 1.21895 0.96446 0.97662 0.89634 1.22047 0.98976 0.87606 0.97279 1.63883 1.53195 1.02707 1.06402 1.23322 1.00583 0.92652 0.93390 1.23075 0.91583 0.89858 0.91648 0.89134 1.88010 1.36309 1.59837 1.46541 1.21389 0.93426 0.93560 0.88892 1.20773 0.99610 0.96157 0.98637 1.21878 0.92871 1.00293 0.93955 1.22494 0.99062 0.95470 1.02211 1.23312 0.97336 0.94453 0.91714 1.67736 1.05554 1.37700 1.11716 1.22933 0.93899 0.91271 0.97325 1.22236 1.03207 0.93871 0.95279 1.22359 0.94958 0.94220 0.91720 0.93378 1.21720 0.98206 0.88629 0.95969 0.92677 0.94950 0.93564 0.91943 0.94993 0.93006 0.95986 0.91654 0.89190 0.94455 0.88639 0.93548 0.90660 0.90598 0.83053 0.81809 0.80497 0.81990 0.89765 0.89793 0.95842 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 9.80 71.98 0.71 -4.31 16 2 C -0.10 -5.00 5.16 30.59 0.16 -4.85 16 3 C 0.22 11.19 1.69 44.17 0.07 11.27 16 4 H 0.00 0.10 8.01 -2.39 -0.02 0.08 16 5 C -0.55 -29.55 7.19 25.60 0.18 -29.37 16 6 H 0.05 2.71 5.96 -2.91 -0.02 2.69 16 7 C 0.02 1.13 5.29 84.66 0.45 1.58 16 8 N -0.91 -52.05 11.29 21.45 0.24 -51.81 16 9 Si 0.94 43.85 29.54 68.60 2.03 45.87 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 N -0.54 -22.79 4.01 -874.61 -3.50 -26.29 16 14 C 0.07 2.80 5.02 86.60 0.43 3.24 16 15 C 0.07 2.10 6.04 86.78 0.52 2.63 16 16 N -0.54 -15.66 4.85 -863.84 -4.19 -19.85 16 17 C 0.03 0.63 6.47 87.07 0.56 1.19 16 18 C 0.10 1.99 3.56 32.08 0.11 2.10 16 19 H 0.09 1.58 7.83 -2.39 -0.02 1.56 16 20 O -0.39 -7.89 9.97 -148.98 -1.48 -9.38 16 21 C 0.10 1.50 5.94 71.24 0.42 1.92 16 22 C -0.15 -2.41 5.53 -19.77 -0.11 -2.52 16 23 C -0.06 -0.87 9.86 22.47 0.22 -0.65 16 24 C -0.17 -2.04 10.11 22.36 0.23 -1.81 16 25 C 0.09 1.29 11.18 84.69 0.95 2.23 16 26 N -0.52 -10.28 10.36 -195.84 -2.03 -12.31 16 27 C 0.10 1.85 10.86 84.67 0.92 2.77 16 28 C -0.11 -2.68 6.48 31.43 0.20 -2.48 16 29 C 0.08 2.34 2.62 44.39 0.12 2.46 16 30 H 0.05 1.58 8.00 -2.39 -0.02 1.56 16 31 C 0.08 3.24 5.00 85.89 0.43 3.67 16 32 H 0.05 2.11 7.75 -2.39 -0.02 2.09 16 33 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.06 3.37 5.95 -2.39 -0.01 3.36 16 36 H 0.03 1.48 6.32 -2.39 -0.02 1.47 16 37 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 38 H 0.02 0.97 6.07 -2.39 -0.01 0.96 16 39 H 0.07 2.56 6.33 -2.39 -0.02 2.55 16 40 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.04 1.12 8.02 -2.39 -0.02 1.10 16 42 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 44 H 0.08 0.85 8.10 -2.39 -0.02 0.84 16 45 H 0.08 0.89 8.05 -2.39 -0.02 0.87 16 46 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 47 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 48 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 49 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 50 H 0.08 2.05 8.00 -2.39 -0.02 2.03 16 51 H 0.08 2.09 8.02 -2.39 -0.02 2.07 16 52 H 0.02 1.02 7.43 -2.39 -0.02 1.00 16 53 H 0.06 2.33 8.09 -2.39 -0.02 2.31 16 Total: -1.00 -64.82 408.30 -1.48 -66.31 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.87 Total: 18.39 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 6.58 Total: -10.93 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -9.48 Total: -110.26 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -1.48 Total: -9.38 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -64.82 -1.48 -66.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169589.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.334 kcal (2) G-P(sol) polarization free energy of solvation -64.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds