Wall clock time and date at job start Wed Apr 1 2020 04:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47438 * 2 1 4 4 H 1.09002 * 109.47137 * 303.39635 * 3 2 1 5 5 C 1.50696 * 109.47395 * 183.39620 * 3 2 1 6 6 H 1.07999 * 119.99929 * 239.99885 * 5 3 2 7 7 C 1.37878 * 120.00048 * 60.00217 * 5 3 2 8 8 N 1.31511 * 120.00018 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00076 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47242 * 60.00116 * 9 7 5 11 11 H 1.48498 * 109.47151 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47353 * 299.99810 * 9 7 5 13 13 N 1.46907 * 109.47242 * 63.39523 * 3 2 1 14 14 C 1.46586 * 111.00310 * 191.96938 * 13 3 2 15 15 C 1.53697 * 111.03608 * 180.12009 * 14 13 3 16 16 N 1.45635 * 107.50669 * 56.22237 * 15 14 13 17 17 C 1.46947 * 117.17346 * 179.43929 * 16 15 14 18 18 C 1.55278 * 103.39998 * 162.52154 * 17 16 15 19 19 H 1.09003 * 110.44193 * 94.83229 * 18 17 16 20 20 O 1.42902 * 110.34867 * 217.06661 * 18 17 16 21 21 C 1.42901 * 113.99860 * 265.48670 * 20 18 17 22 22 C 1.50696 * 109.47298 * 180.02562 * 21 20 18 23 23 C 1.38670 * 120.41914 * 89.99935 * 22 21 20 24 24 C 1.38626 * 118.42502 * 179.72758 * 23 22 21 25 25 C 1.38230 * 119.16043 * 0.02562 * 24 23 22 26 26 N 1.31858 * 120.75992 * 359.97438 * 25 24 23 27 27 C 1.31886 * 121.72881 * 0.02562 * 26 25 24 28 28 C 1.55068 * 104.91330 * 335.92249 * 18 17 16 29 29 C 1.48859 * 108.89289 * 296.47113 * 16 15 14 30 30 H 1.08996 * 110.85881 * 307.94325 * 29 16 15 31 31 C 1.47588 * 110.99845 * 65.80642 * 13 3 2 32 32 H 1.08998 * 109.47580 * 184.70727 * 1 2 3 33 33 H 1.09006 * 109.47445 * 304.71137 * 1 2 3 34 34 H 1.09004 * 109.47116 * 64.71002 * 1 2 3 35 35 H 1.08999 * 109.47172 * 239.99844 * 2 1 3 36 36 H 1.08998 * 109.47363 * 120.00393 * 2 1 3 37 37 H 0.97003 * 120.00399 * 180.02562 * 8 7 5 38 38 H 1.08997 * 109.17023 * 300.52597 * 14 13 3 39 39 H 1.09004 * 109.16313 * 59.72625 * 14 13 3 40 40 H 1.08999 * 109.84893 * 175.71857 * 15 14 13 41 41 H 1.08992 * 109.85163 * 296.72736 * 15 14 13 42 42 H 1.08996 * 110.63048 * 44.04672 * 17 16 15 43 43 H 1.09000 * 110.63458 * 281.00416 * 17 16 15 44 44 H 1.09003 * 109.47219 * 60.00488 * 21 20 18 45 45 H 1.08998 * 109.47451 * 300.00370 * 21 20 18 46 46 H 1.08003 * 120.78716 * 359.70748 * 23 22 21 47 47 H 1.07993 * 120.42292 * 179.97438 * 24 23 22 48 48 H 1.07996 * 119.62316 * 180.02562 * 25 24 23 49 49 H 1.07998 * 119.61645 * 180.02562 * 27 26 25 50 50 H 1.09001 * 110.50050 * 115.85713 * 28 18 17 51 51 H 1.08992 * 110.50817 * 238.55814 * 28 18 17 52 52 H 1.09003 * 109.86971 * 63.12441 * 31 13 3 53 53 H 1.09004 * 109.87223 * 302.08491 * 31 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6278 1.9736 -0.8580 5 6 3.5446 1.4433 -0.0842 6 1 4.1292 1.8951 0.7035 7 6 4.1748 0.8672 -1.1667 8 7 3.4629 0.3166 -2.1257 9 14 6.0399 0.8688 -1.2714 10 1 6.6019 0.1456 -0.1025 11 1 6.4660 0.1926 -2.5229 12 1 6.5344 2.2690 -1.2718 13 7 1.6185 2.1109 1.2384 14 6 1.8377 3.5579 1.1552 15 6 1.3997 4.2577 2.4516 16 7 2.1283 3.6398 3.5507 17 6 1.8766 4.1626 4.9008 18 6 2.4161 3.0399 5.8279 19 1 3.4434 3.2520 6.1244 20 8 1.5842 2.9059 6.9820 21 6 2.0389 3.6478 8.1156 22 6 1.0925 3.4338 9.2686 23 6 1.2981 2.3935 10.1620 24 6 0.4052 2.2382 11.2109 25 6 -0.6534 3.1191 11.3303 26 7 -0.8180 4.0973 10.4616 27 6 0.0116 4.2750 9.4518 28 6 2.3581 1.7504 4.9686 29 6 1.7287 2.2093 3.6500 30 1 0.6441 2.1116 3.6955 31 6 2.2692 1.5031 2.4154 32 1 -0.3634 -1.0242 0.0843 33 1 -0.3634 0.5852 0.8448 34 1 -0.3633 0.4390 -0.9292 35 1 1.8932 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8899 37 1 3.9063 -0.0891 -2.8871 38 1 2.8970 3.7502 0.9850 39 1 1.2633 3.9594 0.3202 40 1 1.6405 5.3195 2.3986 41 1 0.3276 4.1272 2.5986 42 1 0.8091 4.3134 5.0613 43 1 2.4252 5.0906 5.0618 44 1 2.0737 4.7082 7.8657 45 1 3.0357 3.3078 8.3963 46 1 2.1340 1.7199 10.0433 47 1 0.5344 1.4387 11.9253 48 1 -1.3533 3.0053 12.1448 49 1 -0.1554 5.0879 8.7607 50 1 3.3613 1.3603 4.7974 51 1 1.7319 0.9990 5.4494 52 1 3.3489 1.6396 2.3535 53 1 2.0315 0.4404 2.4626 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255169590.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:53 Heat of formation + Delta-G solvation = -7.170857 kcal Electronic energy + Delta-G solvation = -30767.707375 eV Core-core repulsion = 26831.694216 eV Total energy + Delta-G solvation = -3936.013159 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.27532 -40.98181 -39.04879 -37.54668 -34.87401 -33.93563 -33.43079 -32.73071 -32.57759 -30.25890 -29.08023 -27.88605 -27.19863 -25.33957 -24.52067 -24.38397 -23.07129 -22.87076 -21.88360 -21.04794 -20.68294 -18.39002 -18.10161 -17.73902 -17.46581 -17.25095 -16.84161 -16.36968 -16.08800 -15.90687 -15.47082 -15.28368 -15.12483 -15.03866 -14.74659 -14.70317 -14.51912 -13.98646 -13.77315 -13.62817 -13.61999 -13.48776 -13.32688 -13.10215 -12.86779 -12.65135 -12.55116 -12.42697 -12.29882 -12.14366 -11.98162 -11.90835 -11.65433 -11.50735 -11.45581 -11.06711 -10.95808 -10.79651 -10.58660 -10.40783 -10.36755 -10.03142 -9.39724 -8.85397 -7.99993 -6.22029 0.07520 0.32828 1.39167 1.39736 1.47134 2.42029 2.48612 2.94740 3.17599 3.22214 3.33745 3.54763 3.61616 3.70985 3.89766 3.90744 4.00910 4.06854 4.09216 4.25817 4.30817 4.41510 4.44129 4.47947 4.50661 4.54219 4.61742 4.63994 4.73041 4.76361 4.78570 4.82872 4.85450 4.91496 4.93890 4.96889 5.02113 5.14685 5.17399 5.18115 5.26914 5.30787 5.34471 5.43279 5.52341 5.66302 5.75601 5.79208 5.87386 6.06511 6.19997 6.24280 6.32493 6.43743 6.72015 6.98297 6.99959 7.48130 8.94482 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.018556 B = 0.002167 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.560097 B =12916.768777 C =13191.404267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.224 3.776 4 H 0.001 0.999 5 C -0.546 4.546 6 H 0.049 0.951 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.945 3.055 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.277 1.277 13 N -0.541 5.541 14 C 0.071 3.929 15 C 0.072 3.928 16 N -0.535 5.535 17 C 0.028 3.972 18 C 0.097 3.903 19 H 0.092 0.908 20 O -0.388 6.388 21 C 0.104 3.896 22 C -0.150 4.150 23 C -0.063 4.063 24 C -0.172 4.172 25 C 0.088 3.912 26 N -0.519 5.519 27 C 0.101 3.899 28 C -0.108 4.108 29 C 0.072 3.928 30 H 0.047 0.953 31 C 0.088 3.912 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.032 0.968 35 H 0.062 0.938 36 H 0.031 0.969 37 H 0.261 0.739 38 H 0.017 0.983 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.038 0.962 42 H 0.045 0.955 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.154 0.846 47 H 0.165 0.835 48 H 0.178 0.822 49 H 0.161 0.839 50 H 0.083 0.917 51 H 0.084 0.916 52 H 0.027 0.973 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.702 5.778 25.342 26.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.142 4.142 3 C 0.117 3.883 4 H 0.019 0.981 5 C -0.585 4.585 6 H 0.067 0.933 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.771 3.229 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.203 1.203 13 N -0.265 5.265 14 C -0.058 4.058 15 C -0.057 4.057 16 N -0.261 5.261 17 C -0.100 4.100 18 C 0.039 3.961 19 H 0.110 0.890 20 O -0.307 6.307 21 C 0.027 3.973 22 C -0.152 4.152 23 C -0.089 4.089 24 C -0.192 4.192 25 C -0.069 4.069 26 N -0.228 5.228 27 C -0.055 4.055 28 C -0.147 4.147 29 C -0.036 4.036 30 H 0.065 0.935 31 C -0.040 4.040 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.035 0.965 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.114 0.886 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.171 0.829 47 H 0.183 0.817 48 H 0.195 0.805 49 H 0.178 0.822 50 H 0.101 0.899 51 H 0.103 0.897 52 H 0.045 0.955 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.539 6.201 25.185 26.332 hybrid contribution 1.854 -0.412 -0.914 2.107 sum -2.686 5.790 24.271 25.096 Atomic orbital electron populations 1.21571 0.96428 0.99898 1.00457 1.21417 0.94329 0.98180 1.00303 1.18974 0.91653 0.91396 0.86308 0.98087 1.21912 0.93936 1.36965 1.05668 0.93287 1.25596 1.01750 0.95070 0.95477 1.69992 1.36339 1.38625 1.10114 0.85820 0.81672 0.78061 0.77313 1.19854 1.20987 1.20265 1.62036 1.58007 1.02686 1.03799 1.21866 0.98425 0.88846 0.96625 1.22001 0.95465 0.98522 0.89701 1.63895 1.55397 1.03193 1.03599 1.23320 0.99870 0.98801 0.88029 1.23073 0.94315 0.94012 0.84711 0.89037 1.88011 1.51932 1.70270 1.20479 1.21399 0.95675 0.96805 0.83393 1.20773 0.98565 0.98083 0.97759 1.21894 0.99120 0.95224 0.92696 1.22500 0.95565 1.01455 0.99662 1.23317 0.96688 0.89831 0.97016 1.67732 1.28988 1.21674 1.04367 1.22906 0.89664 0.98460 0.94472 1.22206 1.02202 0.97221 0.93025 1.22356 0.97603 0.89120 0.94535 0.93539 1.21713 0.96173 0.97422 0.88731 0.93538 0.92601 0.94916 0.91949 0.95053 0.93005 0.96468 0.92043 0.89058 0.94427 0.93669 0.88616 0.90838 0.90416 0.82851 0.81733 0.80501 0.82207 0.89854 0.89744 0.95496 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.10 9.85 71.98 0.71 -4.40 16 2 C -0.10 -4.97 5.12 30.59 0.16 -4.81 16 3 C 0.22 11.21 1.71 44.17 0.08 11.28 16 4 H 0.00 0.07 8.02 -2.39 -0.02 0.05 16 5 C -0.55 -29.55 7.15 25.60 0.18 -29.37 16 6 H 0.05 2.70 5.97 -2.91 -0.02 2.68 16 7 C 0.02 1.14 5.30 84.66 0.45 1.59 16 8 N -0.91 -52.08 11.30 21.45 0.24 -51.84 16 9 Si 0.94 43.77 29.54 68.60 2.03 45.79 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 N -0.54 -22.90 3.86 -874.60 -3.37 -26.27 16 14 C 0.07 2.78 5.44 86.60 0.47 3.25 16 15 C 0.07 2.19 6.05 86.78 0.52 2.71 16 16 N -0.53 -15.80 4.85 -864.38 -4.19 -20.00 16 17 C 0.03 0.63 6.47 87.08 0.56 1.19 16 18 C 0.10 2.02 3.59 32.08 0.12 2.13 16 19 H 0.09 1.59 7.81 -2.39 -0.02 1.57 16 20 O -0.39 -7.95 9.97 -148.98 -1.48 -9.43 16 21 C 0.10 1.51 5.93 71.23 0.42 1.93 16 22 C -0.15 -2.43 5.53 -19.78 -0.11 -2.54 16 23 C -0.06 -0.86 9.86 22.47 0.22 -0.63 16 24 C -0.17 -2.02 10.11 22.36 0.23 -1.79 16 25 C 0.09 1.29 11.18 84.69 0.95 2.23 16 26 N -0.52 -10.40 10.36 -195.84 -2.03 -12.43 16 27 C 0.10 1.87 10.86 84.67 0.92 2.79 16 28 C -0.11 -2.71 6.46 31.35 0.20 -2.51 16 29 C 0.07 2.26 2.60 44.30 0.12 2.37 16 30 H 0.05 1.54 8.03 -2.39 -0.02 1.53 16 31 C 0.09 3.42 4.53 85.89 0.39 3.81 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.05 2.17 7.57 -2.38 -0.02 2.15 16 34 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.06 3.37 5.99 -2.39 -0.01 3.36 16 36 H 0.03 1.47 6.36 -2.39 -0.02 1.45 16 37 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 38 H 0.02 0.75 7.24 -2.39 -0.02 0.74 16 39 H 0.06 2.39 8.09 -2.39 -0.02 2.37 16 40 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.04 1.14 8.03 -2.39 -0.02 1.12 16 42 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 43 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 45 H 0.08 0.87 8.06 -2.39 -0.02 0.85 16 46 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 47 H 0.17 0.89 8.06 -2.91 -0.02 0.86 16 48 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 49 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 50 H 0.08 2.08 8.02 -2.39 -0.02 2.07 16 51 H 0.08 2.04 8.00 -2.39 -0.02 2.03 16 52 H 0.03 1.18 6.30 -2.39 -0.02 1.17 16 53 H 0.06 2.53 6.35 -2.38 -0.02 2.51 16 Total: -1.00 -64.96 408.06 -1.36 -66.31 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.87 Total: 18.62 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: 6.58 Total: -10.76 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -9.35 Total: -110.53 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -1.48 Total: -9.43 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -64.96 -1.36 -66.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169590.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.143 kcal (2) G-P(sol) polarization free energy of solvation -64.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds