Wall clock time and date at job start Wed Apr 1 2020 04:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46947 * 2 1 4 4 H 1.08997 * 109.47326 * 182.06357 * 3 2 1 5 5 C 1.50709 * 109.47064 * 62.06344 * 3 2 1 6 6 H 1.08000 * 119.99733 * 243.84607 * 5 3 2 7 7 C 1.37873 * 119.99743 * 63.85018 * 5 3 2 8 8 N 1.31515 * 119.99733 * 195.23895 * 7 5 3 9 9 Si 1.86800 * 120.00226 * 15.24282 * 7 5 3 10 10 H 1.48499 * 109.47295 * 92.43378 * 9 7 5 11 11 H 1.48500 * 109.47027 * 212.43206 * 9 7 5 12 12 H 1.48494 * 109.46984 * 332.43195 * 9 7 5 13 13 N 1.46900 * 109.47291 * 302.06644 * 3 2 1 14 14 C 1.46604 * 110.99511 * 307.31394 * 13 3 2 15 15 C 1.53717 * 110.95578 * 179.97438 * 14 13 3 16 16 N 1.45471 * 107.57128 * 55.95089 * 15 14 13 17 17 C 1.46169 * 117.41469 * 176.81512 * 16 15 14 18 18 C 1.54885 * 105.83831 * 152.02913 * 17 16 15 19 19 H 1.09006 * 110.33845 * 237.06435 * 18 17 16 20 20 O 1.42896 * 110.34602 * 114.91388 * 18 17 16 21 21 C 1.42903 * 114.00007 * 91.44962 * 20 18 17 22 22 C 1.50699 * 109.47255 * 180.02562 * 21 20 18 23 23 C 1.38674 * 120.41910 * 89.99779 * 22 21 20 24 24 C 1.38635 * 118.41830 * 180.02562 * 23 22 21 25 25 C 1.38226 * 119.16008 * 0.02562 * 24 23 22 26 26 N 1.31850 * 120.76656 * 359.97438 * 25 24 23 27 27 C 1.31892 * 121.72471 * 359.70471 * 26 25 24 28 28 C 1.57158 * 105.14328 * 355.96006 * 18 17 16 29 29 C 1.48801 * 109.31403 * 296.72856 * 16 15 14 30 30 H 1.08999 * 111.11059 * 306.76877 * 29 16 15 31 31 C 1.47557 * 111.00109 * 181.15561 * 13 3 2 32 32 H 1.09002 * 109.46958 * 174.88469 * 1 2 3 33 33 H 1.08997 * 109.47211 * 294.88354 * 1 2 3 34 34 H 1.09003 * 109.46770 * 54.88954 * 1 2 3 35 35 H 1.08993 * 109.47413 * 239.99572 * 2 1 3 36 36 H 1.08999 * 109.46591 * 119.99551 * 2 1 3 37 37 H 0.97002 * 120.00052 * 179.97438 * 8 7 5 38 38 H 1.08995 * 109.18494 * 300.35213 * 14 13 3 39 39 H 1.09002 * 109.18163 * 59.64779 * 14 13 3 40 40 H 1.09005 * 109.83494 * 175.46888 * 15 14 13 41 41 H 1.08997 * 109.83584 * 296.36520 * 15 14 13 42 42 H 1.08999 * 110.17414 * 271.11433 * 17 16 15 43 43 H 1.08999 * 110.17968 * 32.92969 * 17 16 15 44 44 H 1.09002 * 109.46826 * 300.00034 * 21 20 18 45 45 H 1.08997 * 109.47283 * 60.00092 * 21 20 18 46 46 H 1.07993 * 120.78925 * 359.97438 * 23 22 21 47 47 H 1.07993 * 120.41571 * 180.02562 * 24 23 22 48 48 H 1.07999 * 119.61278 * 180.02562 * 25 24 23 49 49 H 1.07999 * 119.61839 * 180.31308 * 27 26 25 50 50 H 1.09002 * 111.67520 * 219.85689 * 28 18 17 51 51 H 1.08998 * 110.93588 * 95.66405 * 28 18 17 52 52 H 1.08997 * 109.86255 * 63.45472 * 31 13 3 53 53 H 1.09003 * 109.86218 * 302.42360 * 31 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4428 -0.0370 5 6 1.5798 2.1380 1.2553 6 1 0.9059 2.9794 1.1903 7 6 2.0193 1.7001 2.4866 8 7 1.4053 2.0923 3.5815 9 14 3.4868 0.5499 2.5997 10 1 4.7278 1.3464 2.7749 11 1 3.3144 -0.3597 3.7608 12 1 3.5848 -0.2515 1.3534 13 7 1.5100 2.1493 -1.1737 14 6 1.7911 1.4060 -2.4056 15 6 1.2355 2.1460 -3.6331 16 7 1.8059 3.4842 -3.6344 17 6 1.4733 4.3565 -4.7592 18 6 1.5568 5.8029 -4.2115 19 1 0.6084 6.3194 -4.3597 20 8 2.6156 6.5166 -4.8530 21 6 2.2098 7.2321 -6.0216 22 6 3.3993 7.9432 -6.6135 23 6 4.1936 7.3143 -7.5605 24 6 5.2778 8.0068 -8.0772 25 6 5.5295 9.2916 -7.6340 26 7 4.7526 9.8584 -6.7320 27 6 3.7093 9.2320 -6.2233 28 6 1.8567 5.6442 -2.6770 29 6 1.3509 4.2143 -2.4203 30 1 0.2645 4.1942 -2.3342 31 6 2.0040 3.5389 -1.2218 32 1 -0.3633 -1.0236 -0.0916 33 1 -0.3633 0.4324 0.9322 34 1 -0.3633 0.5911 -0.8407 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 1.7142 1.7840 4.4478 38 1 2.8692 1.2893 -2.5155 39 1 1.3288 0.4208 -2.3429 40 1 1.5234 1.6203 -4.5436 41 1 0.1491 2.2059 -3.5685 42 1 2.1917 4.2184 -5.5672 43 1 0.4640 4.1459 -5.1127 44 1 1.8039 6.5330 -6.7528 45 1 1.4460 7.9620 -5.7538 46 1 3.9733 6.3088 -7.8870 47 1 5.9175 7.5481 -8.8165 48 1 6.3719 9.8379 -8.0319 49 1 3.0928 9.7305 -5.4899 50 1 1.2996 6.3671 -2.0811 51 1 2.9259 5.7204 -2.4792 52 1 3.0876 3.5428 -1.3396 53 1 1.7282 4.0619 -0.3061 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255169591.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:58 Heat of formation + Delta-G solvation = 0.294527 kcal Electronic energy + Delta-G solvation = -30718.501160 eV Core-core repulsion = 26782.811724 eV Total energy + Delta-G solvation = -3935.689435 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.26200 -40.98196 -39.12409 -37.68160 -34.87949 -33.94739 -33.32723 -33.25532 -32.56951 -30.01060 -29.48845 -27.98453 -27.21078 -25.50797 -24.52610 -24.00829 -23.48543 -22.93728 -21.97116 -21.06302 -20.47590 -18.50247 -18.13518 -17.77953 -17.42361 -17.23757 -17.04839 -16.49156 -16.31180 -15.89815 -15.74835 -15.31356 -15.01015 -14.96505 -14.79160 -14.66156 -14.64439 -14.40664 -13.99805 -13.83706 -13.61401 -13.49166 -13.25686 -12.98983 -12.85039 -12.79298 -12.64220 -12.41819 -12.20682 -12.10859 -12.04521 -11.91069 -11.82603 -11.64482 -11.36998 -11.10053 -10.87920 -10.80125 -10.58322 -10.53184 -10.36299 -10.03066 -9.26997 -8.89015 -8.25098 -6.19961 0.07545 0.32695 1.31094 1.36812 1.44082 2.36472 2.53637 2.97259 3.02824 3.09008 3.21731 3.52496 3.58283 3.70484 3.87613 3.89797 4.05262 4.08403 4.13175 4.15543 4.21680 4.31044 4.38090 4.43557 4.48252 4.49477 4.52090 4.53409 4.61904 4.65002 4.70864 4.72237 4.77809 4.85512 4.92278 4.94601 4.95756 5.04029 5.08021 5.12096 5.17130 5.20382 5.29991 5.30564 5.36864 5.42090 5.73404 5.75468 5.82921 5.90026 6.10402 6.26823 6.34209 6.46649 6.77737 6.83588 6.99913 7.41903 8.91325 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.017770 B = 0.002186 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.336551 B =12806.227009 C =13372.415554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.118 4.118 3 C 0.196 3.804 4 H -0.023 1.023 5 C -0.490 4.490 6 H 0.040 0.960 7 C 0.023 3.977 8 N -0.940 5.940 9 Si 0.914 3.086 10 H -0.284 1.284 11 H -0.286 1.286 12 H -0.232 1.232 13 N -0.535 5.535 14 C 0.057 3.943 15 C 0.073 3.927 16 N -0.549 5.549 17 C 0.035 3.965 18 C 0.091 3.909 19 H 0.094 0.906 20 O -0.386 6.386 21 C 0.103 3.897 22 C -0.150 4.150 23 C -0.064 4.064 24 C -0.173 4.173 25 C 0.087 3.913 26 N -0.519 5.519 27 C 0.101 3.899 28 C -0.106 4.106 29 C 0.078 3.922 30 H 0.060 0.940 31 C 0.089 3.911 32 H 0.050 0.950 33 H 0.029 0.971 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.041 0.959 37 H 0.263 0.737 38 H 0.017 0.983 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.041 0.959 42 H 0.085 0.915 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.153 0.847 47 H 0.164 0.836 48 H 0.177 0.823 49 H 0.162 0.838 50 H 0.091 0.909 51 H 0.068 0.932 52 H 0.016 0.984 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.732 7.889 -27.154 28.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.156 4.156 3 C 0.088 3.912 4 H -0.006 1.006 5 C -0.528 4.528 6 H 0.059 0.941 7 C -0.175 4.175 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.211 1.211 11 H -0.212 1.212 12 H -0.155 1.155 13 N -0.260 5.260 14 C -0.071 4.071 15 C -0.056 4.056 16 N -0.276 5.276 17 C -0.093 4.093 18 C 0.033 3.967 19 H 0.112 0.888 20 O -0.306 6.306 21 C 0.027 3.973 22 C -0.152 4.152 23 C -0.089 4.089 24 C -0.193 4.193 25 C -0.069 4.069 26 N -0.228 5.228 27 C -0.055 4.055 28 C -0.145 4.145 29 C -0.030 4.030 30 H 0.078 0.922 31 C -0.040 4.040 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.035 0.965 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.060 0.940 42 H 0.104 0.896 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.170 0.830 47 H 0.182 0.818 48 H 0.195 0.805 49 H 0.180 0.820 50 H 0.110 0.890 51 H 0.087 0.913 52 H 0.034 0.966 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.127 8.629 -26.631 28.074 hybrid contribution 0.422 -1.184 0.645 1.413 sum 2.549 7.445 -25.986 27.151 Atomic orbital electron populations 1.21363 0.94845 0.99566 1.01408 1.21912 0.97776 0.96401 0.99509 1.19430 0.91021 0.91960 0.88751 1.00582 1.20950 1.27135 1.15089 0.89639 0.94136 1.25548 0.98749 0.97782 0.95420 1.70090 1.40972 1.48312 0.98638 0.86393 0.80653 0.79997 0.79018 1.21105 1.21235 1.15544 1.61481 1.60537 1.01874 1.02118 1.22227 0.97861 0.97770 0.89217 1.21983 0.96927 0.88894 0.97751 1.62811 1.59373 1.02635 1.02747 1.23040 1.00354 0.92104 0.93769 1.23591 0.90710 0.91055 0.91389 0.88778 1.88044 1.35279 1.65767 1.41481 1.21399 0.93369 0.95019 0.87530 1.20785 0.99459 0.95947 0.98990 1.21884 0.92963 1.00373 0.93726 1.22496 0.98735 0.95950 1.02100 1.23305 0.97791 0.93514 0.92292 1.67730 1.05509 1.38665 1.10864 1.22937 0.93559 0.92149 0.96884 1.22691 1.02253 0.95061 0.94477 1.22449 0.97583 0.92899 0.90080 0.92247 1.21728 0.95616 0.89504 0.97125 0.93095 0.95213 0.92133 0.92361 0.94054 0.92827 0.96509 0.89540 0.88644 0.94039 0.89635 0.92365 0.90508 0.90549 0.82957 0.81816 0.80548 0.82030 0.89033 0.91342 0.96574 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.52 9.28 71.98 0.67 -3.85 16 2 C -0.12 -4.91 4.45 30.60 0.14 -4.77 16 3 C 0.20 9.11 1.35 44.17 0.06 9.17 16 4 H -0.02 -1.14 6.86 -2.39 -0.02 -1.16 16 5 C -0.49 -27.21 7.20 25.60 0.18 -27.03 16 6 H 0.04 2.52 7.19 -2.91 -0.02 2.50 16 7 C 0.02 1.31 5.35 84.65 0.45 1.76 16 8 N -0.94 -58.07 13.96 21.45 0.30 -57.77 16 9 Si 0.91 44.01 25.80 68.60 1.77 45.78 16 10 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.23 -10.25 5.39 99.48 0.54 -9.71 16 13 N -0.54 -21.42 3.62 -874.35 -3.16 -24.59 16 14 C 0.06 1.87 4.82 86.60 0.42 2.28 16 15 C 0.07 1.88 6.00 86.81 0.52 2.40 16 16 N -0.55 -14.81 4.69 -866.18 -4.06 -18.87 16 17 C 0.04 0.71 6.67 87.09 0.58 1.29 16 18 C 0.09 1.78 3.53 32.70 0.12 1.90 16 19 H 0.09 1.38 7.85 -2.38 -0.02 1.36 16 20 O -0.39 -8.09 9.98 -148.98 -1.49 -9.57 16 21 C 0.10 1.47 5.95 71.24 0.42 1.89 16 22 C -0.15 -2.48 5.53 -19.77 -0.11 -2.59 16 23 C -0.06 -0.89 9.86 22.47 0.22 -0.67 16 24 C -0.17 -2.16 10.11 22.36 0.23 -1.93 16 25 C 0.09 1.34 11.18 84.69 0.95 2.29 16 26 N -0.52 -10.69 10.36 -195.84 -2.03 -12.72 16 27 C 0.10 1.90 10.86 84.67 0.92 2.82 16 28 C -0.11 -2.70 6.50 32.34 0.21 -2.49 16 29 C 0.08 2.34 2.70 44.59 0.12 2.46 16 30 H 0.06 1.82 8.08 -2.39 -0.02 1.80 16 31 C 0.09 3.46 5.01 85.94 0.43 3.89 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.03 1.37 7.46 -2.39 -0.02 1.35 16 34 H 0.06 2.28 6.90 -2.39 -0.02 2.26 16 35 H 0.06 2.08 6.44 -2.39 -0.02 2.07 16 36 H 0.04 1.82 4.76 -2.39 -0.01 1.81 16 37 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.09 2.63 5.75 -2.39 -0.01 2.61 16 40 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 41 H 0.04 1.07 8.08 -2.39 -0.02 1.05 16 42 H 0.09 1.66 7.99 -2.39 -0.02 1.64 16 43 H 0.06 0.98 8.05 -2.39 -0.02 0.96 16 44 H 0.08 0.81 8.09 -2.39 -0.02 0.79 16 45 H 0.08 0.85 8.05 -2.39 -0.02 0.83 16 46 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 47 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 48 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 49 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 50 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 51 H 0.07 2.01 8.09 -2.39 -0.02 1.99 16 52 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 53 H 0.06 2.72 6.59 -2.39 -0.02 2.70 16 Total: -1.00 -70.39 401.80 -1.44 -71.83 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.71 Total: 17.10 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 6.52 Total: -11.18 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -8.95 Total: -113.95 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -1.49 Total: -9.57 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.77 Total: 45.78 kcal Total: -70.39 -1.44 -71.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169591.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.123 kcal (2) G-P(sol) polarization free energy of solvation -70.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds