Wall clock time and date at job start Wed Apr 1 2020 04:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47389 * 2 1 4 4 H 1.09000 * 109.47171 * 53.75097 * 3 2 1 5 5 C 1.50695 * 109.47393 * 173.75365 * 3 2 1 6 6 H 1.08001 * 119.99891 * 119.99844 * 5 3 2 7 7 C 1.37874 * 120.00361 * 300.00238 * 5 3 2 8 8 N 1.31513 * 120.00416 * 179.97438 * 7 5 3 9 9 Si 1.86804 * 119.99621 * 0.02562 * 7 5 3 10 10 H 1.48488 * 109.47554 * 89.99698 * 9 7 5 11 11 H 1.48499 * 109.46978 * 209.99989 * 9 7 5 12 12 H 1.48507 * 109.47112 * 329.99591 * 9 7 5 13 13 N 1.46501 * 109.47122 * 293.75663 * 3 2 1 14 14 C 1.39007 * 120.00063 * 306.42918 * 13 3 2 15 15 C 1.39135 * 119.70604 * 169.20027 * 14 13 3 16 16 C 1.38294 * 119.09947 * 179.97438 * 15 14 13 17 17 C 1.38888 * 118.50222 * 0.02562 * 16 15 14 18 18 C 1.38026 * 119.33113 * 359.97438 * 17 16 15 19 19 N 1.31971 * 120.85118 * 359.72742 * 18 17 16 20 20 C 1.46506 * 120.00043 * 126.43077 * 13 3 2 21 21 H 1.09005 * 109.52740 * 173.06722 * 20 13 3 22 22 C 1.53032 * 109.49920 * 52.97460 * 20 13 3 23 23 N 1.46855 * 109.50050 * 180.84646 * 22 20 13 24 24 C 1.46844 * 111.19136 * 61.79416 * 23 22 20 25 25 C 1.53010 * 109.55751 * 298.27543 * 24 23 22 26 26 H 1.09007 * 109.54950 * 298.98966 * 25 24 23 27 27 C 1.53153 * 109.32451 * 178.63615 * 25 24 23 28 28 C 1.53178 * 109.05512 * 297.17782 * 27 25 24 29 29 C 1.53107 * 109.18209 * 303.08116 * 28 27 25 30 30 O 1.42883 * 109.40819 * 57.63872 * 29 28 27 31 31 C 1.42872 * 114.16311 * 298.85181 * 30 29 28 32 32 H 1.08999 * 109.52943 * 300.89478 * 31 30 29 33 33 H 1.08995 * 109.46767 * 286.62124 * 1 2 3 34 34 H 1.08997 * 109.46834 * 46.61874 * 1 2 3 35 35 H 1.08996 * 109.46822 * 166.62200 * 1 2 3 36 36 H 1.09005 * 109.46505 * 240.00159 * 2 1 3 37 37 H 1.09002 * 109.47236 * 120.00386 * 2 1 3 38 38 H 0.97002 * 120.00033 * 179.97438 * 8 7 5 39 39 H 1.08004 * 120.45169 * 0.02562 * 15 14 13 40 40 H 1.07997 * 120.75461 * 180.02562 * 16 15 14 41 41 H 1.08000 * 120.33351 * 179.97438 * 17 16 15 42 42 H 1.07999 * 119.57271 * 179.97438 * 18 17 16 43 43 H 1.08999 * 109.46952 * 60.84107 * 22 20 13 44 44 H 1.08996 * 109.46134 * 300.85502 * 22 20 13 45 45 H 1.00900 * 111.00017 * 185.88556 * 23 22 20 46 46 H 1.09003 * 109.45385 * 178.24824 * 24 23 22 47 47 H 1.08994 * 109.44602 * 58.29326 * 24 23 22 48 48 H 1.08995 * 109.48741 * 177.33608 * 27 25 24 49 49 H 1.09002 * 109.59845 * 57.07678 * 27 25 24 50 50 H 1.09002 * 109.52759 * 183.15710 * 28 27 25 51 51 H 1.08990 * 109.53239 * 63.00698 * 28 27 25 52 52 H 1.09000 * 109.47610 * 177.62214 * 29 28 27 53 53 H 1.09004 * 109.48143 * 297.63943 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5883 1.9876 0.8288 5 6 3.5391 1.4452 0.1546 6 1 4.1602 1.8842 -0.6122 7 6 4.1177 0.8874 1.2748 8 7 5.4259 0.8894 1.4095 9 14 3.0434 0.1274 2.6007 10 1 2.8288 -1.3108 2.2999 11 1 3.7138 0.2628 3.9188 12 1 1.7336 0.8263 2.6374 13 7 1.6783 2.0883 -1.2642 14 6 2.0273 1.4958 -2.4723 15 6 1.4934 1.9856 -3.6601 16 6 1.8495 1.3870 -4.8548 17 6 2.7307 0.3140 -4.8217 18 6 3.2220 -0.1202 -3.6071 19 7 2.8692 0.4741 -2.4828 20 6 0.9487 3.3588 -1.2552 21 1 0.8772 3.7451 -2.2720 22 6 1.6910 4.3679 -0.3763 23 7 0.9491 5.6350 -0.3509 24 6 -0.3876 5.4560 0.2300 25 6 -1.1925 4.4783 -0.6288 26 1 -1.3028 4.8823 -1.6352 27 6 -2.5732 4.2693 0.0003 28 6 -2.4015 3.6316 1.3824 29 6 -1.6232 2.3210 1.2386 30 8 -0.3618 2.5832 0.6209 31 6 -0.4578 3.1364 -0.6929 32 1 -1.0072 2.4506 -1.3378 33 1 -0.3633 0.2939 0.9847 34 1 -0.3633 0.7058 -0.7469 35 1 -0.3633 -0.9998 -0.2378 36 1 1.8933 -0.5139 -0.8901 37 1 1.8934 -0.5139 0.8900 38 1 5.8330 0.4972 2.1978 39 1 0.8108 2.8225 -3.6493 40 1 1.4515 1.7458 -5.7925 41 1 3.0284 -0.1758 -5.7370 42 1 3.9071 -0.9545 -3.5767 43 1 2.6881 4.5389 -0.7821 44 1 1.7738 3.9751 0.6371 45 1 1.4659 6.3468 0.1435 46 1 -0.9005 6.4172 0.2636 47 1 -0.2938 5.0590 1.2407 48 1 -3.1658 3.6104 -0.6341 49 1 -3.0777 5.2301 0.1024 50 1 -3.3816 3.4278 1.8139 51 1 -1.8517 4.3124 2.0321 52 1 -1.4616 1.8843 2.2242 53 1 -2.1928 1.6257 0.6219 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255169915.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:56 Heat of formation + Delta-G solvation = 7.569494 kcal Electronic energy + Delta-G solvation = -34393.692878 eV Core-core repulsion = 30458.318909 eV Total energy + Delta-G solvation = -3935.373969 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.82282 -40.65455 -38.16212 -37.28658 -35.12586 -34.34729 -33.66985 -32.95223 -31.98798 -30.99931 -29.91718 -28.32664 -26.32190 -24.80739 -24.72546 -24.36461 -23.74083 -23.35120 -22.17278 -20.84867 -19.63873 -19.01122 -17.92240 -17.59668 -17.19882 -17.00819 -16.78752 -16.54783 -16.35681 -15.96693 -15.75043 -15.48168 -15.24277 -14.96716 -14.65031 -14.34546 -14.28398 -14.11678 -13.89355 -13.83279 -13.68433 -13.49477 -13.32231 -13.28187 -12.88055 -12.73959 -12.45841 -12.41823 -12.18704 -12.05181 -11.86042 -11.70243 -11.64004 -11.43037 -11.26064 -11.14851 -11.07040 -10.59881 -10.53140 -10.35553 -10.14496 -9.73080 -9.36105 -8.18607 -8.12696 -6.12524 0.60300 0.84047 1.29017 1.32099 1.43245 2.24625 2.36240 2.89760 3.19016 3.27173 3.34522 3.72323 3.81611 3.87905 3.89888 4.00251 4.12832 4.18452 4.23376 4.27698 4.32604 4.41511 4.44898 4.52689 4.57798 4.58347 4.60826 4.64754 4.67868 4.72879 4.77808 4.92077 4.94541 4.95768 5.03605 5.05893 5.14329 5.15676 5.19292 5.22519 5.29988 5.30472 5.35201 5.40526 5.43141 5.57115 5.72484 5.77842 5.95989 6.02294 6.23296 6.44367 6.45711 6.66697 6.81392 6.92398 7.47020 7.71433 9.00537 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008899 B = 0.006501 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3145.512391 B = 4306.121074 C = 5815.841700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.141 4.141 3 C 0.281 3.719 4 H 0.059 0.941 5 C -0.470 4.470 6 H 0.024 0.976 7 C 0.007 3.993 8 N -0.957 5.957 9 Si 0.939 3.061 10 H -0.281 1.281 11 H -0.305 1.305 12 H -0.242 1.242 13 N -0.584 5.584 14 C 0.391 3.609 15 C -0.259 4.259 16 C -0.036 4.036 17 C -0.243 4.243 18 C 0.115 3.885 19 N -0.546 5.546 20 C 0.170 3.830 21 H 0.111 0.889 22 C 0.066 3.934 23 N -0.681 5.681 24 C 0.065 3.935 25 C -0.107 4.107 26 H 0.097 0.903 27 C -0.106 4.106 28 C -0.151 4.151 29 C 0.048 3.952 30 O -0.379 6.379 31 C 0.088 3.912 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.038 0.962 36 H 0.063 0.937 37 H 0.026 0.974 38 H 0.257 0.743 39 H 0.144 0.856 40 H 0.163 0.837 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.050 0.950 44 H 0.021 0.979 45 H 0.351 0.649 46 H 0.095 0.905 47 H 0.027 0.973 48 H 0.073 0.927 49 H 0.088 0.912 50 H 0.088 0.912 51 H 0.064 0.936 52 H 0.082 0.918 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.317 7.462 -7.509 22.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.179 4.179 3 C 0.178 3.822 4 H 0.076 0.924 5 C -0.510 4.510 6 H 0.042 0.958 7 C -0.188 4.188 8 N -0.600 5.600 9 Si 0.768 3.232 10 H -0.208 1.208 11 H -0.234 1.234 12 H -0.166 1.166 13 N -0.293 5.293 14 C 0.157 3.843 15 C -0.284 4.284 16 C -0.062 4.062 17 C -0.266 4.266 18 C -0.043 4.043 19 N -0.263 5.263 20 C 0.065 3.935 21 H 0.129 0.871 22 C -0.065 4.065 23 N -0.313 5.313 24 C -0.064 4.064 25 C -0.127 4.127 26 H 0.115 0.885 27 C -0.144 4.144 28 C -0.188 4.188 29 C -0.028 4.028 30 O -0.299 6.299 31 C 0.029 3.971 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.045 0.955 38 H 0.066 0.934 39 H 0.161 0.839 40 H 0.181 0.819 41 H 0.170 0.830 42 H 0.165 0.835 43 H 0.068 0.932 44 H 0.039 0.961 45 H 0.169 0.831 46 H 0.113 0.887 47 H 0.045 0.955 48 H 0.092 0.908 49 H 0.106 0.894 50 H 0.107 0.893 51 H 0.083 0.917 52 H 0.100 0.900 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.950 7.130 -6.973 22.304 hybrid contribution 0.644 -0.674 1.142 1.474 sum -19.307 6.456 -5.831 21.176 Atomic orbital electron populations 1.21822 0.95083 0.99846 1.01699 1.22159 0.96013 0.99646 1.00121 1.18712 0.91554 0.89358 0.82620 0.92388 1.21482 0.92179 1.34473 1.02819 0.95806 1.25604 0.95663 0.97155 1.00360 1.70063 1.11232 1.48991 1.29744 0.86004 0.80165 0.79172 0.77819 1.20786 1.23368 1.16619 1.46635 1.58160 1.21689 1.02858 1.18772 0.89019 0.89799 0.86755 1.21647 1.08320 1.06379 0.92089 1.21586 0.93592 0.92960 0.98011 1.21986 1.03877 1.01737 0.98973 1.22786 0.96284 0.97277 0.87980 1.67519 1.14787 1.12136 1.31834 1.21070 0.89527 0.82704 1.00233 0.87115 1.21917 0.96150 0.90079 0.98342 1.60306 1.04422 1.07480 1.59076 1.22009 0.89150 0.99680 0.95585 1.21738 0.95417 0.94193 1.01341 0.88526 1.21535 0.94952 1.02244 0.95637 1.22184 1.01175 0.97121 0.98352 1.22701 0.85338 0.96911 0.97858 1.88171 1.28985 1.82928 1.29779 1.22519 0.95201 0.94415 0.84988 0.92200 0.92779 0.92087 0.94294 0.91862 0.95541 0.93367 0.83880 0.81926 0.83020 0.83515 0.93178 0.96086 0.83059 0.88679 0.95525 0.90821 0.89386 0.89313 0.91730 0.89988 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 8.09 71.98 0.58 -4.07 16 2 C -0.14 -6.52 4.70 30.59 0.14 -6.38 16 3 C 0.28 13.39 0.53 44.24 0.02 13.41 16 4 H 0.06 2.86 3.76 -2.39 -0.01 2.86 16 5 C -0.47 -27.89 8.16 25.60 0.21 -27.68 16 6 H 0.02 1.62 7.95 -2.91 -0.02 1.60 16 7 C 0.01 0.43 5.45 84.65 0.46 0.89 16 8 N -0.96 -63.34 13.96 21.45 0.30 -63.04 16 9 Si 0.94 48.42 24.42 68.60 1.67 50.10 16 10 H -0.28 -14.28 6.82 99.48 0.68 -13.61 16 11 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 12 H -0.24 -11.54 6.53 99.48 0.65 -10.89 16 13 N -0.58 -23.69 1.79 -660.01 -1.18 -24.87 16 14 C 0.39 15.85 6.67 133.06 0.89 16.74 16 15 C -0.26 -8.13 9.23 22.50 0.21 -7.92 16 16 C -0.04 -0.94 10.17 22.44 0.23 -0.72 16 17 C -0.24 -6.91 10.10 22.38 0.23 -6.68 16 18 C 0.12 4.27 11.17 84.62 0.95 5.21 16 19 N -0.55 -24.70 6.60 -193.26 -1.28 -25.98 16 20 C 0.17 5.49 2.41 45.03 0.11 5.60 16 21 H 0.11 3.23 5.55 -2.38 -0.01 3.22 16 22 C 0.07 2.28 5.59 86.32 0.48 2.76 16 23 N -0.68 -17.36 6.85 -514.06 -3.52 -20.88 16 24 C 0.06 1.37 5.43 86.32 0.47 1.84 16 25 C -0.11 -2.10 2.67 -10.70 -0.03 -2.13 16 26 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 27 C -0.11 -1.56 5.52 30.71 0.17 -1.39 16 28 C -0.15 -2.56 5.77 30.69 0.18 -2.38 16 29 C 0.05 1.12 5.04 72.02 0.36 1.48 16 30 O -0.38 -11.57 4.13 -148.98 -0.61 -12.19 16 31 C 0.09 2.33 1.66 30.67 0.05 2.38 16 32 H 0.06 1.57 7.11 -2.39 -0.02 1.55 16 33 H 0.05 1.88 6.01 -2.39 -0.01 1.86 16 34 H 0.06 2.10 4.83 -2.39 -0.01 2.09 16 35 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 3.13 5.74 -2.38 -0.01 3.11 16 37 H 0.03 1.32 3.21 -2.39 -0.01 1.31 16 38 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 39 H 0.14 3.71 6.00 -2.91 -0.02 3.69 16 40 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 41 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 42 H 0.15 4.99 8.06 -2.91 -0.02 4.97 16 43 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.02 0.87 6.44 -2.39 -0.02 0.85 16 45 H 0.35 8.12 8.90 -89.69 -0.80 7.32 16 46 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.03 0.66 6.07 -2.39 -0.01 0.65 16 48 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.06 1.21 6.58 -2.39 -0.02 1.19 16 52 H 0.08 1.97 8.12 -2.39 -0.02 1.95 16 53 H 0.05 1.16 7.92 -2.38 -0.02 1.15 16 Total: -1.00 -76.20 370.23 1.14 -75.06 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.05 Total: 30.82 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 5.71 Total: -9.02 kcal Atomic # 7 Polarization: -129.09 SS G_CDS: -5.68 Total: -134.76 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -0.61 Total: -12.19 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 1.67 Total: 50.10 kcal Total: -76.20 1.14 -75.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169915.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.625 kcal (2) G-P(sol) polarization free energy of solvation -76.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds