Wall clock time and date at job start Wed Apr 1 2020 04:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47199 * 2 1 4 4 H 1.08996 * 109.47189 * 305.00143 * 3 2 1 5 5 C 1.50700 * 109.46999 * 184.99734 * 3 2 1 6 6 H 1.07995 * 120.00664 * 239.99864 * 5 3 2 7 7 C 1.37885 * 119.99841 * 60.00690 * 5 3 2 8 8 N 1.31518 * 119.99703 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00044 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47120 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46886 * 119.99752 * 9 7 5 12 12 H 1.48497 * 109.47076 * 239.99818 * 9 7 5 13 13 N 1.46501 * 109.46798 * 65.00463 * 3 2 1 14 14 C 1.38999 * 120.00438 * 59.99733 * 13 3 2 15 15 C 1.39137 * 119.70897 * 190.38245 * 14 13 3 16 16 C 1.38290 * 119.09942 * 179.97438 * 15 14 13 17 17 C 1.38890 * 118.50526 * 0.02562 * 16 15 14 18 18 C 1.38016 * 119.32758 * 359.97438 * 17 16 15 19 19 N 1.31969 * 120.85663 * 359.72465 * 18 17 16 20 20 C 1.46504 * 119.99661 * 239.99376 * 13 3 2 21 21 H 1.09002 * 109.52789 * 173.84421 * 20 13 3 22 22 C 1.53039 * 109.49780 * 53.76182 * 20 13 3 23 23 N 1.46852 * 109.50059 * 180.84805 * 22 20 13 24 24 C 1.46835 * 111.19731 * 61.78767 * 23 22 20 25 25 C 1.53009 * 109.56009 * 298.27778 * 24 23 22 26 26 H 1.08999 * 109.54704 * 298.98886 * 25 24 23 27 27 C 1.53152 * 109.32499 * 178.63027 * 25 24 23 28 28 C 1.53176 * 109.05951 * 297.17617 * 27 25 24 29 29 C 1.53103 * 109.18408 * 303.08218 * 28 27 25 30 30 O 1.42885 * 109.40662 * 57.63972 * 29 28 27 31 31 C 1.42873 * 114.16028 * 298.84656 * 30 29 28 32 32 H 1.08999 * 109.52994 * 300.89670 * 31 30 29 33 33 H 1.08996 * 109.47655 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47044 * 300.00029 * 1 2 3 35 35 H 1.09003 * 109.47048 * 59.99437 * 1 2 3 36 36 H 1.09001 * 109.47044 * 239.99970 * 2 1 3 37 37 H 1.09003 * 109.47048 * 120.00563 * 2 1 3 38 38 H 0.97001 * 119.99656 * 179.97438 * 8 7 5 39 39 H 1.08007 * 120.44688 * 0.02982 * 15 14 13 40 40 H 1.08007 * 120.75036 * 180.02562 * 16 15 14 41 41 H 1.08005 * 120.33188 * 179.97438 * 17 16 15 42 42 H 1.08003 * 119.56932 * 179.97438 * 18 17 16 43 43 H 1.08995 * 109.46909 * 60.83204 * 22 20 13 44 44 H 1.09000 * 109.45961 * 300.84846 * 22 20 13 45 45 H 1.00899 * 110.99536 * 185.88573 * 23 22 20 46 46 H 1.08999 * 109.45913 * 178.24749 * 24 23 22 47 47 H 1.08999 * 109.44473 * 58.29499 * 24 23 22 48 48 H 1.08999 * 109.48719 * 177.33260 * 27 25 24 49 49 H 1.09007 * 109.59770 * 57.08467 * 27 25 24 50 50 H 1.08998 * 109.52766 * 183.15059 * 28 27 25 51 51 H 1.08994 * 109.52825 * 63.01489 * 28 27 25 52 52 H 1.09000 * 109.47657 * 177.61949 * 29 28 27 53 53 H 1.09001 * 109.48020 * 297.65160 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4061 0.3367 -2.1729 9 14 6.0049 0.8811 -1.3818 10 1 6.5988 1.5460 -0.1942 11 1 6.4969 -0.5177 -1.4631 12 1 6.3990 1.6166 -2.6102 13 7 1.6525 2.0974 1.2519 14 6 2.0903 1.5864 2.4681 15 6 1.5508 2.0729 3.6548 16 6 1.9952 1.5551 4.8577 17 6 2.9685 0.5646 4.8338 18 6 3.4597 0.1286 3.6199 19 7 3.0127 0.6368 2.4869 20 6 0.8035 3.2910 1.2218 21 1 0.5324 3.5710 2.2398 22 6 -0.4650 2.9955 0.4183 23 7 -1.3065 4.1980 0.3710 24 6 -0.6149 5.3039 -0.3032 25 6 0.6501 5.6684 0.4766 26 1 0.3787 5.9904 1.4820 27 6 1.3850 6.7989 -0.2495 28 6 1.8247 6.3036 -1.6307 29 6 2.6964 5.0561 -1.4638 30 8 1.9623 4.0552 -0.7560 31 6 1.5646 4.4430 0.5603 32 1 2.4477 4.6870 1.1508 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 -0.3633 0.5139 -0.8900 36 1 1.8933 -0.5138 -0.8900 37 1 1.8933 -0.5139 0.8900 38 1 3.8292 -0.0611 -2.9500 39 1 0.7946 2.8439 3.6367 40 1 1.5945 1.9130 5.7946 41 1 3.3371 0.1397 5.7558 42 1 4.2169 -0.6412 3.5968 43 1 -1.0162 2.1848 0.8947 44 1 -0.1926 2.7027 -0.5957 45 1 -2.1922 4.0023 -0.0710 46 1 -1.2748 6.1702 -0.3501 47 1 -0.3432 4.9995 -1.3140 48 1 2.2613 7.0930 0.3283 49 1 0.7186 7.6540 -0.3639 50 1 2.3973 7.0838 -2.1322 51 1 0.9457 6.0570 -2.2261 52 1 2.9772 4.6749 -2.4456 53 1 3.5950 5.3129 -0.9028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255169916.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:01 Heat of formation + Delta-G solvation = 3.284350 kcal Electronic energy + Delta-G solvation = -34205.497240 eV Core-core repulsion = 30269.937453 eV Total energy + Delta-G solvation = -3935.559787 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.67633 -40.60270 -38.18773 -36.97842 -35.11067 -34.29022 -33.26412 -32.86343 -31.95797 -30.85240 -29.87176 -27.84769 -26.31603 -25.03391 -24.70450 -24.27904 -23.87394 -22.98880 -22.14167 -20.67263 -19.62040 -18.73571 -17.70265 -17.39658 -17.07541 -16.95541 -16.70503 -16.40173 -16.33692 -15.88497 -15.76253 -15.57951 -15.11389 -14.73472 -14.53947 -14.35122 -14.16193 -14.05802 -13.79990 -13.70829 -13.63204 -13.35357 -13.09197 -13.03961 -12.90076 -12.70181 -12.50210 -12.35952 -12.16842 -12.04179 -11.80498 -11.73046 -11.68876 -11.44349 -11.31742 -11.24928 -10.77433 -10.50137 -10.35322 -10.25078 -10.07575 -9.65697 -9.32030 -8.14198 -7.80462 -5.88608 0.64790 0.88741 1.34577 1.38421 1.47652 2.33071 2.56351 3.00167 3.31311 3.37138 3.39858 3.78421 3.83212 3.87916 3.92369 4.02409 4.12681 4.18730 4.24597 4.28806 4.36076 4.53570 4.53796 4.58568 4.59942 4.63151 4.65806 4.71662 4.72393 4.81251 4.83199 4.91236 4.97255 4.99072 5.00138 5.10832 5.14276 5.19624 5.26083 5.33181 5.35200 5.38274 5.44237 5.59766 5.62021 5.79028 5.91490 6.00483 6.04434 6.17708 6.47374 6.51229 6.57434 6.67932 6.94229 7.18917 7.70136 7.79430 9.15137 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008431 B = 0.006439 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3320.247557 B = 4347.224682 C = 5886.244601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.131 4.131 3 C 0.314 3.686 4 H 0.041 0.959 5 C -0.445 4.445 6 H 0.028 0.972 7 C 0.012 3.988 8 N -0.924 5.924 9 Si 0.932 3.068 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.286 1.286 13 N -0.588 5.588 14 C 0.392 3.608 15 C -0.267 4.267 16 C -0.036 4.036 17 C -0.248 4.248 18 C 0.116 3.884 19 N -0.542 5.542 20 C 0.166 3.834 21 H 0.110 0.890 22 C 0.062 3.938 23 N -0.680 5.680 24 C 0.068 3.932 25 C -0.107 4.107 26 H 0.095 0.905 27 C -0.107 4.107 28 C -0.146 4.146 29 C 0.057 3.943 30 O -0.365 6.365 31 C 0.084 3.916 32 H 0.029 0.971 33 H 0.039 0.961 34 H 0.049 0.951 35 H 0.038 0.962 36 H 0.062 0.938 37 H 0.035 0.965 38 H 0.251 0.749 39 H 0.140 0.860 40 H 0.160 0.840 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.077 0.923 44 H 0.022 0.978 45 H 0.355 0.645 46 H 0.098 0.902 47 H 0.024 0.976 48 H 0.063 0.937 49 H 0.094 0.906 50 H 0.086 0.914 51 H 0.070 0.930 52 H 0.072 0.928 53 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.301 11.789 8.627 17.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.170 4.170 3 C 0.212 3.788 4 H 0.058 0.942 5 C -0.485 4.485 6 H 0.047 0.953 7 C -0.183 4.183 8 N -0.567 5.567 9 Si 0.761 3.239 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.297 5.297 14 C 0.158 3.842 15 C -0.292 4.292 16 C -0.062 4.062 17 C -0.271 4.271 18 C -0.043 4.043 19 N -0.259 5.259 20 C 0.060 3.940 21 H 0.128 0.872 22 C -0.068 4.068 23 N -0.312 5.312 24 C -0.061 4.061 25 C -0.127 4.127 26 H 0.114 0.886 27 C -0.145 4.145 28 C -0.183 4.183 29 C -0.020 4.020 30 O -0.283 6.283 31 C 0.025 3.975 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.158 0.842 40 H 0.178 0.822 41 H 0.168 0.832 42 H 0.167 0.833 43 H 0.095 0.905 44 H 0.040 0.960 45 H 0.174 0.826 46 H 0.117 0.883 47 H 0.042 0.958 48 H 0.082 0.918 49 H 0.113 0.887 50 H 0.104 0.896 51 H 0.089 0.911 52 H 0.090 0.910 53 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.886 11.503 8.004 16.593 hybrid contribution 1.502 -0.416 -0.706 1.711 sum -7.385 11.086 7.298 15.189 Atomic orbital electron populations 1.21778 0.97230 0.99692 0.99918 1.21817 0.93513 1.00822 1.00831 1.18243 0.92471 0.87841 0.80243 0.94170 1.21269 0.92783 1.32555 1.01859 0.95333 1.25250 0.99765 0.96937 0.96398 1.69981 1.34714 1.41870 1.10161 0.85919 0.84132 0.76999 0.76853 1.20979 1.21531 1.21257 1.47029 1.50927 1.28025 1.03758 1.18789 0.88955 0.89760 0.86738 1.21646 1.07357 1.07993 0.92192 1.21549 0.93591 0.93190 0.97845 1.21956 1.03126 1.03001 0.99061 1.22816 0.96844 0.96777 0.87851 1.67596 1.13361 1.13678 1.31222 1.21081 0.89198 0.83688 0.99996 0.87206 1.22195 0.93365 0.92742 0.98508 1.60276 1.06569 1.06141 1.58184 1.21946 0.94819 0.94532 0.94819 1.21736 0.94975 0.94644 1.01324 0.88638 1.21549 1.00441 0.97497 0.95038 1.22165 1.00475 0.97205 0.98493 1.22507 0.93749 0.89589 0.96197 1.88212 1.73673 1.39585 1.26845 1.22505 0.95522 0.94615 0.84861 0.95248 0.94186 0.93183 0.94329 0.91978 0.94650 0.93970 0.84220 0.82247 0.83188 0.83314 0.90522 0.95991 0.82623 0.88348 0.95754 0.91825 0.88722 0.89568 0.91114 0.91000 0.94969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.32 8.53 71.98 0.61 -4.70 16 2 C -0.13 -6.58 5.13 30.59 0.16 -6.42 16 3 C 0.31 15.61 0.74 44.24 0.03 15.65 16 4 H 0.04 2.22 4.79 -2.39 -0.01 2.21 16 5 C -0.44 -25.11 7.18 25.60 0.18 -24.92 16 6 H 0.03 1.73 7.21 -2.91 -0.02 1.70 16 7 C 0.01 0.69 5.29 84.66 0.45 1.14 16 8 N -0.92 -54.79 11.29 21.45 0.24 -54.55 16 9 Si 0.93 47.39 29.54 68.60 2.03 49.42 16 10 H -0.28 -14.58 7.11 99.48 0.71 -13.88 16 11 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 12 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 13 N -0.59 -24.61 1.86 -660.00 -1.23 -25.84 16 14 C 0.39 16.21 6.60 133.07 0.88 17.09 16 15 C -0.27 -8.67 9.32 22.50 0.21 -8.46 16 16 C -0.04 -0.98 10.17 22.44 0.23 -0.75 16 17 C -0.25 -7.12 10.10 22.37 0.23 -6.89 16 18 C 0.12 4.25 11.17 84.62 0.95 5.19 16 19 N -0.54 -24.36 6.49 -193.27 -1.25 -25.61 16 20 C 0.17 5.62 2.52 45.04 0.11 5.74 16 21 H 0.11 3.33 5.33 -2.39 -0.01 3.32 16 22 C 0.06 1.95 4.29 86.33 0.37 2.32 16 23 N -0.68 -16.15 6.85 -514.08 -3.52 -19.67 16 24 C 0.07 1.54 5.43 86.32 0.47 2.00 16 25 C -0.11 -2.57 2.67 -10.70 -0.03 -2.60 16 26 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 27 C -0.11 -2.19 5.52 30.70 0.17 -2.02 16 28 C -0.15 -3.46 5.77 30.69 0.18 -3.28 16 29 C 0.06 1.92 6.84 72.02 0.49 2.42 16 30 O -0.36 -14.51 6.21 -148.98 -0.92 -15.43 16 31 C 0.08 2.83 2.54 30.67 0.08 2.91 16 32 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.05 1.91 5.60 -2.39 -0.01 1.90 16 35 H 0.04 1.57 7.52 -2.39 -0.02 1.55 16 36 H 0.06 3.57 5.95 -2.39 -0.01 3.56 16 37 H 0.03 1.86 6.26 -2.39 -0.01 1.84 16 38 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 39 H 0.14 3.89 5.80 -2.91 -0.02 3.88 16 40 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 41 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 42 H 0.15 4.89 8.06 -2.91 -0.02 4.86 16 43 H 0.08 2.39 6.15 -2.39 -0.01 2.37 16 44 H 0.02 0.84 5.64 -2.39 -0.01 0.83 16 45 H 0.35 7.05 8.90 -89.69 -0.80 6.25 16 46 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.02 0.66 6.07 -2.39 -0.01 0.64 16 48 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 50 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 51 H 0.07 1.68 6.58 -2.39 -0.02 1.67 16 52 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 53 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -69.03 380.93 1.23 -67.79 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.13 Total: 29.51 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 5.76 Total: -5.62 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -5.76 Total: -125.67 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.92 Total: -15.43 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -69.03 1.23 -67.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169916.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.078 kcal (2) G-P(sol) polarization free energy of solvation -69.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds