Wall clock time and date at job start Wed Apr 1 2020 04:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46760 * 2 1 4 4 H 1.08999 * 109.47030 * 55.00754 * 3 2 1 5 5 C 1.50700 * 109.46629 * 175.00278 * 3 2 1 6 6 H 1.07997 * 120.00628 * 0.02562 * 5 3 2 7 7 C 1.37883 * 119.99898 * 180.02562 * 5 3 2 8 8 N 1.31513 * 119.99781 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99875 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47594 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47121 * 120.00382 * 9 7 5 12 12 H 1.48506 * 109.46884 * 239.99774 * 9 7 5 13 13 N 1.46500 * 109.47553 * 295.00301 * 3 2 1 14 14 C 1.39002 * 119.99838 * 113.67676 * 13 3 2 15 15 C 1.39135 * 119.70701 * 9.18775 * 14 13 3 16 16 C 1.38292 * 119.09589 * 180.22984 * 15 14 13 17 17 C 1.38886 * 118.50634 * 359.50690 * 16 15 14 18 18 C 1.38022 * 119.32982 * 0.25416 * 17 16 15 19 19 N 1.31977 * 120.85447 * 359.97438 * 18 17 16 20 20 C 1.46495 * 119.99800 * 293.67140 * 13 3 2 21 21 H 1.09000 * 110.43461 * 358.92843 * 20 13 3 22 22 C 1.54152 * 110.47851 * 121.45462 * 20 13 3 23 23 O 1.43866 * 107.34286 * 116.78476 * 22 20 13 24 24 C 1.43661 * 106.96882 * 25.66667 * 23 22 20 25 25 C 1.54371 * 104.34142 * 320.88311 * 24 23 22 26 26 C 1.52396 * 110.61489 * 202.42180 * 24 23 22 27 27 C 1.53161 * 109.35217 * 292.98939 * 26 24 23 28 28 N 1.46853 * 109.43623 * 301.92781 * 27 26 24 29 29 C 1.46857 * 111.32143 * 62.25376 * 28 27 26 30 30 C 1.52403 * 110.61342 * 79.33057 * 24 23 22 31 31 H 1.08998 * 109.47664 * 59.99968 * 1 2 3 32 32 H 1.09003 * 109.46986 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47049 * 299.99328 * 1 2 3 34 34 H 1.09008 * 109.46541 * 240.00462 * 2 1 3 35 35 H 1.08993 * 109.47422 * 120.00730 * 2 1 3 36 36 H 0.96997 * 120.00052 * 179.97438 * 8 7 5 37 37 H 1.08006 * 120.45326 * 0.02562 * 15 14 13 38 38 H 1.08001 * 120.75118 * 179.78060 * 16 15 14 39 39 H 1.07999 * 120.33641 * 180.26735 * 17 16 15 40 40 H 1.07993 * 119.57502 * 180.02562 * 18 17 16 41 41 H 1.09001 * 109.86660 * 236.22695 * 22 20 13 42 42 H 1.08997 * 109.87172 * 357.34604 * 22 20 13 43 43 H 1.09003 * 110.91991 * 278.03315 * 25 24 23 44 44 H 1.08994 * 110.91683 * 154.39716 * 25 24 23 45 45 H 1.09005 * 109.49195 * 52.95664 * 26 24 23 46 46 H 1.08997 * 109.49259 * 173.02758 * 26 24 23 47 47 H 1.08997 * 109.48282 * 181.93332 * 27 26 24 48 48 H 1.09007 * 109.48059 * 61.91771 * 27 26 24 49 49 H 1.00906 * 110.99897 * 298.06415 * 28 27 26 50 50 H 1.08997 * 109.47565 * 177.75662 * 29 28 27 51 51 H 1.09003 * 109.48361 * 57.73926 * 29 28 27 52 52 H 1.08998 * 109.49065 * 186.96955 * 30 24 23 53 53 H 1.08999 * 109.48856 * 307.02492 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5418 1.4443 0.1238 6 1 4.0790 0.5101 0.1949 7 6 4.2303 2.6387 0.1463 8 7 3.5762 3.7764 0.0602 9 14 6.0919 2.6409 0.3004 10 1 6.5837 1.2421 0.3809 11 1 6.6861 3.3064 -0.8867 12 1 6.4860 3.3763 1.5290 13 7 1.6523 2.0976 -1.2517 14 6 0.7425 3.1483 -1.2335 15 6 0.3501 3.6996 -0.0178 16 6 -0.5594 4.7414 -0.0141 17 6 -1.0402 5.2059 -1.2315 18 6 -0.6039 4.6155 -2.4003 19 7 0.2615 3.6194 -2.3735 20 6 2.2236 1.6453 -2.5226 21 1 2.9284 0.8309 -2.3546 22 6 1.1071 1.2016 -3.4884 23 8 1.1479 2.0828 -4.6249 24 6 2.4916 2.5821 -4.7202 25 6 2.9153 2.8220 -3.2553 26 6 2.5233 3.8923 -5.4979 27 6 2.1452 3.6252 -6.9579 28 7 3.0766 2.6461 -7.5327 29 6 2.9963 1.3577 -6.8325 30 6 3.4037 1.5473 -5.3682 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8898 36 1 4.0604 4.6167 0.0764 37 1 0.7478 3.3169 0.9106 38 1 -0.8851 5.1868 0.9143 39 1 -1.7480 6.0209 -1.2633 40 1 -0.9748 4.9738 -3.3491 41 1 1.2813 0.1746 -3.8093 42 1 0.1383 1.2782 -2.9948 43 1 2.5408 3.7797 -2.8937 44 1 3.9985 2.7639 -3.1490 45 1 1.8117 4.5924 -5.0601 46 1 3.5260 4.3172 -5.4539 47 1 2.2004 4.5552 -7.5237 48 1 1.1297 3.2314 -7.0042 49 1 4.0213 3.0009 -7.5300 50 1 3.6690 0.6435 -7.3074 51 1 1.9744 0.9814 -6.8797 52 1 4.4367 1.8918 -5.3198 53 1 3.3114 0.5989 -4.8390 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255170610.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:51 Heat of formation + Delta-G solvation = -5.453855 kcal Electronic energy + Delta-G solvation = -34005.467793 eV Core-core repulsion = 30069.529089 eV Total energy + Delta-G solvation = -3935.938704 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.70835 -40.45934 -38.36942 -37.31281 -34.41660 -33.85653 -32.71227 -32.63794 -31.97250 -31.29767 -29.76674 -28.07278 -27.08111 -25.10291 -24.23660 -23.87476 -23.57978 -22.94825 -21.99412 -20.91180 -20.38112 -18.52917 -18.11914 -17.28805 -17.05317 -16.64482 -16.37743 -16.19871 -16.06521 -15.80547 -15.41739 -15.37389 -15.16169 -15.03646 -14.55978 -14.46969 -14.23612 -13.87642 -13.67443 -13.50206 -13.47319 -13.44802 -13.16152 -12.95817 -12.76658 -12.60684 -12.51067 -12.41698 -12.25390 -12.18868 -12.10514 -11.88665 -11.78657 -11.67293 -11.33108 -11.28073 -11.16517 -10.60480 -10.51645 -10.22688 -10.13230 -9.76192 -9.27990 -8.14061 -7.75028 -6.25218 0.81274 0.97915 1.32144 1.39906 1.45822 2.38499 2.54413 3.05949 3.30916 3.41121 3.44905 3.76575 3.86431 3.92093 4.04313 4.19783 4.20626 4.26960 4.30925 4.36674 4.40494 4.43164 4.44814 4.50746 4.59231 4.69132 4.70257 4.74324 4.75259 4.79990 4.90787 4.93922 4.97916 5.04019 5.06586 5.09773 5.13800 5.17994 5.21418 5.26791 5.31993 5.32899 5.41365 5.47858 5.51883 5.56741 5.71613 5.81938 6.08362 6.10034 6.21637 6.25691 6.53766 6.66253 6.89150 7.20885 7.46213 7.77423 8.90847 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008906 B = 0.005754 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.194941 B = 4865.022088 C = 6046.087604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.121 4.121 3 C 0.268 3.732 4 H 0.033 0.967 5 C -0.546 4.546 6 H 0.054 0.946 7 C 0.050 3.950 8 N -0.867 5.867 9 Si 0.929 3.071 10 H -0.269 1.269 11 H -0.290 1.290 12 H -0.287 1.287 13 N -0.551 5.551 14 C 0.417 3.583 15 C -0.229 4.229 16 C -0.056 4.056 17 C -0.259 4.259 18 C 0.124 3.876 19 N -0.549 5.549 20 C 0.154 3.846 21 H 0.077 0.923 22 C 0.065 3.935 23 O -0.352 6.352 24 C 0.118 3.882 25 C -0.118 4.118 26 C -0.132 4.132 27 C 0.071 3.929 28 N -0.685 5.685 29 C 0.071 3.929 30 C -0.167 4.167 31 H 0.035 0.965 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.253 0.747 37 H 0.107 0.893 38 H 0.135 0.865 39 H 0.143 0.857 40 H 0.159 0.841 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.040 0.960 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.087 0.913 48 H 0.066 0.934 49 H 0.345 0.655 50 H 0.088 0.912 51 H 0.066 0.934 52 H 0.069 0.931 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 -1.348 -8.603 9.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.160 4.160 3 C 0.167 3.833 4 H 0.051 0.949 5 C -0.585 4.585 6 H 0.072 0.928 7 C -0.155 4.155 8 N -0.502 5.502 9 Si 0.756 3.244 10 H -0.194 1.194 11 H -0.217 1.217 12 H -0.213 1.213 13 N -0.259 5.259 14 C 0.181 3.819 15 C -0.254 4.254 16 C -0.082 4.082 17 C -0.282 4.282 18 C -0.035 4.035 19 N -0.267 5.267 20 C 0.048 3.952 21 H 0.095 0.905 22 C -0.013 4.013 23 O -0.271 6.271 24 C 0.078 3.922 25 C -0.157 4.157 26 C -0.171 4.171 27 C -0.059 4.059 28 N -0.313 5.313 29 C -0.059 4.059 30 C -0.207 4.207 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.125 0.875 38 H 0.153 0.847 39 H 0.160 0.840 40 H 0.176 0.824 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.105 0.895 48 H 0.084 0.916 49 H 0.162 0.838 50 H 0.107 0.893 51 H 0.085 0.915 52 H 0.088 0.912 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.609 -1.874 -9.997 11.167 hybrid contribution 1.761 0.948 2.635 3.308 sum -2.848 -0.926 -7.362 7.948 Atomic orbital electron populations 1.21628 0.95929 1.01040 1.00504 1.21847 0.95360 0.97857 1.00954 1.18792 0.93208 0.88666 0.82655 0.94948 1.21565 0.92755 0.92240 1.51953 0.92791 1.25420 1.00322 0.95646 0.94087 1.70129 1.35606 0.97048 1.47454 0.85981 0.83325 0.77998 0.77058 1.19352 1.21699 1.21298 1.47176 1.40714 1.31775 1.06196 1.18511 0.87069 0.87372 0.88910 1.21374 1.03909 1.02216 0.97947 1.21409 0.93911 0.93907 0.98957 1.21771 1.07595 1.05891 0.92947 1.22640 0.91638 0.90679 0.98520 1.67530 1.15311 1.15996 1.27891 1.21702 0.93465 0.95611 0.84394 0.90527 1.23265 0.99263 0.92160 0.86616 1.88725 1.27901 1.63503 1.46927 1.21712 0.83325 0.93693 0.93462 1.23001 0.98072 0.99662 0.94995 1.22011 1.01706 0.95488 0.97936 1.21909 0.96896 0.96074 0.90977 1.60667 1.11486 1.04132 1.55063 1.21901 1.02091 0.92051 0.89842 1.22583 0.99154 0.99647 0.99275 0.94601 0.91826 0.93727 0.93152 0.91844 0.93818 0.87525 0.84703 0.83956 0.82413 0.92796 0.91546 0.92402 0.94087 0.92052 0.91372 0.89453 0.91557 0.83755 0.89327 0.91536 0.91246 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 9.80 71.98 0.71 -3.69 16 2 C -0.12 -4.51 5.37 30.59 0.16 -4.35 16 3 C 0.27 11.85 1.79 44.24 0.08 11.93 16 4 H 0.03 1.60 5.30 -2.39 -0.01 1.58 16 5 C -0.55 -26.63 7.66 25.60 0.20 -26.43 16 6 H 0.05 2.64 7.74 -2.91 -0.02 2.62 16 7 C 0.05 2.51 5.39 84.66 0.46 2.97 16 8 N -0.87 -45.27 12.39 21.45 0.27 -45.01 16 9 Si 0.93 41.09 29.54 68.60 2.03 43.12 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 12 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 13 N -0.55 -23.34 1.24 -654.52 -0.81 -24.16 16 14 C 0.42 17.84 5.80 133.06 0.77 18.61 16 15 C -0.23 -9.69 9.22 22.50 0.21 -9.49 16 16 C -0.06 -2.00 10.17 22.44 0.23 -1.77 16 17 C -0.26 -8.34 10.10 22.37 0.23 -8.11 16 18 C 0.12 4.29 11.17 84.62 0.95 5.24 16 19 N -0.55 -21.95 6.15 -193.27 -1.19 -23.14 16 20 C 0.15 6.12 2.25 46.04 0.10 6.22 16 21 H 0.08 3.18 6.99 -2.39 -0.02 3.17 16 22 C 0.07 2.33 5.82 72.37 0.42 2.75 16 23 O -0.35 -12.33 9.79 -148.98 -1.46 -13.79 16 24 C 0.12 3.80 0.69 -10.73 -0.01 3.79 16 25 C -0.12 -4.71 5.20 31.71 0.16 -4.55 16 26 C -0.13 -3.83 5.10 30.45 0.16 -3.67 16 27 C 0.07 1.73 6.48 86.37 0.56 2.29 16 28 N -0.69 -15.47 6.85 -513.51 -3.52 -18.99 16 29 C 0.07 1.67 6.48 86.37 0.56 2.23 16 30 C -0.17 -4.58 4.86 30.45 0.15 -4.43 16 31 H 0.03 1.26 7.26 -2.39 -0.02 1.25 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.05 1.84 7.36 -2.38 -0.02 1.82 16 35 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.25 13.21 8.31 -92.71 -0.77 12.44 16 37 H 0.11 4.91 5.78 -2.91 -0.02 4.89 16 38 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 39 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 40 H 0.16 4.56 8.06 -2.91 -0.02 4.54 16 41 H 0.05 1.74 7.98 -2.39 -0.02 1.72 16 42 H 0.07 2.59 6.58 -2.39 -0.02 2.57 16 43 H 0.06 2.69 6.28 -2.39 -0.01 2.67 16 44 H 0.04 1.74 8.01 -2.39 -0.02 1.72 16 45 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 46 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.07 1.81 7.97 -2.38 -0.02 1.79 16 49 H 0.34 6.84 8.85 -89.69 -0.79 6.05 16 50 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 51 H 0.07 1.73 7.97 -2.39 -0.02 1.72 16 52 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 53 H 0.07 1.87 7.24 -2.39 -0.02 1.86 16 Total: -1.00 -54.63 399.55 1.50 -53.13 By element: Atomic # 1 Polarization: 39.21 SS G_CDS: 0.10 Total: 39.31 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 6.08 Total: -10.47 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -5.26 Total: -111.30 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -1.46 Total: -13.79 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -54.63 1.50 -53.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255170610.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.678 kcal (2) G-P(sol) polarization free energy of solvation -54.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds