Wall clock time and date at job start Wed Apr 1 2020 04:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47276 * 2 1 4 4 H 1.08999 * 109.46532 * 55.00258 * 3 2 1 5 5 C 1.50699 * 109.46855 * 174.99994 * 3 2 1 6 6 H 1.08007 * 119.99702 * 120.00337 * 5 3 2 7 7 C 1.37877 * 120.00408 * 299.99892 * 5 3 2 8 8 N 1.31516 * 119.99720 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00046 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46927 * 60.00499 * 9 7 5 11 11 H 1.48499 * 109.47004 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47250 * 300.00058 * 9 7 5 13 13 N 1.46896 * 109.47354 * 295.00142 * 3 2 1 14 14 C 1.46955 * 110.99858 * 298.80130 * 13 3 2 15 15 C 1.53052 * 109.36225 * 176.81221 * 14 13 3 16 16 N 1.46952 * 109.36742 * 58.39688 * 15 14 13 17 17 C 1.46906 * 111.00188 * 176.81127 * 16 15 14 18 18 C 1.50693 * 109.47040 * 190.67480 * 17 16 15 19 19 O 1.21288 * 120.00267 * 6.54826 * 18 17 16 20 20 N 1.34783 * 119.99986 * 186.55127 * 18 17 16 21 21 C 1.46504 * 119.99733 * 5.48481 * 20 18 17 22 22 C 1.39924 * 120.00177 * 185.48344 * 20 18 17 23 23 C 1.38868 * 120.07233 * 237.80928 * 22 20 18 24 24 C 1.38112 * 119.92736 * 179.79107 * 23 22 20 25 25 C 1.38279 * 120.07540 * 0.48691 * 24 23 22 26 26 C 1.38287 * 120.13488 * 359.74547 * 25 24 23 27 27 C 1.38108 * 120.07545 * 0.02562 * 26 25 24 28 28 C 1.46955 * 110.88355 * 300.68058 * 16 15 14 29 29 C 1.46952 * 111.00184 * 174.99739 * 13 3 2 30 30 H 1.08995 * 109.47526 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47037 * 299.99689 * 1 2 3 32 32 H 1.09002 * 109.47134 * 59.99521 * 1 2 3 33 33 H 1.09006 * 109.46569 * 240.00083 * 2 1 3 34 34 H 1.09002 * 109.47134 * 120.00479 * 2 1 3 35 35 H 0.96999 * 120.00015 * 180.02562 * 8 7 5 36 36 H 1.08992 * 109.48820 * 296.77400 * 14 13 3 37 37 H 1.09000 * 109.49308 * 56.84316 * 14 13 3 38 38 H 1.09001 * 109.49019 * 298.43071 * 15 14 13 39 39 H 1.09004 * 109.49026 * 178.36761 * 15 14 13 40 40 H 1.09000 * 109.46896 * 310.67342 * 17 16 15 41 41 H 1.08997 * 109.46672 * 70.66963 * 17 16 15 42 42 H 1.09005 * 109.46876 * 89.99968 * 21 20 18 43 43 H 1.08998 * 109.46603 * 209.99927 * 21 20 18 44 44 H 1.08999 * 109.47246 * 330.00122 * 21 20 18 45 45 H 1.08005 * 120.03446 * 0.02814 * 23 22 20 46 46 H 1.08011 * 119.96173 * 180.23067 * 24 23 22 47 47 H 1.07997 * 119.93541 * 179.72033 * 25 24 23 48 48 H 1.07998 * 119.95985 * 179.97438 * 26 25 24 49 49 H 1.07997 * 120.03849 * 179.97438 * 27 26 25 50 50 H 1.09001 * 109.48796 * 299.35669 * 28 16 15 51 51 H 1.08993 * 109.48922 * 179.28484 * 28 16 15 52 52 H 1.09004 * 109.48968 * 303.16007 * 29 13 3 53 53 H 1.09007 * 109.48639 * 63.20042 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3365 2.1729 9 14 6.0051 0.8798 1.3810 10 1 6.5006 2.2797 1.3807 11 1 6.3979 0.2154 2.6496 12 1 6.5966 0.1449 0.2342 13 7 1.6514 2.0993 -1.2552 14 6 2.2438 1.4151 -2.4129 15 6 1.7523 2.0794 -3.7012 16 7 2.1218 3.5016 -3.6877 17 6 1.7332 4.1585 -4.9429 18 6 2.3524 5.5310 -5.0043 19 8 3.1426 5.8784 -4.1523 20 7 2.0282 6.3724 -6.0060 21 6 0.9860 6.0009 -6.9663 22 6 2.6868 7.6008 -6.1288 23 6 1.9606 8.7844 -6.1136 24 6 2.6143 9.9954 -6.2307 25 6 3.9893 10.0298 -6.3729 26 6 4.7148 8.8527 -6.3932 27 6 4.0677 7.6386 -6.2719 28 6 1.5294 4.1859 -2.5299 29 6 2.0210 3.5215 -1.2417 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 1.8932 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 3.8293 -0.0613 2.9498 36 1 3.3302 1.4846 -2.3597 37 1 1.9455 0.3667 -2.4077 38 1 0.6683 1.9860 -3.7678 39 1 2.2131 1.5920 -4.5604 40 1 2.0825 3.5642 -5.7872 41 1 0.6477 4.2473 -4.9855 42 1 0.0183 6.3490 -6.6050 43 1 1.2005 6.4605 -7.9311 44 1 0.9639 4.9168 -7.0772 45 1 0.8862 8.7580 -6.0066 46 1 2.0503 10.9164 -6.2152 47 1 4.4976 10.9778 -6.4688 48 1 5.7886 8.8829 -6.5048 49 1 4.6349 6.7197 -6.2882 50 1 0.4429 4.1163 -2.5832 51 1 1.8277 5.2342 -2.5352 52 1 1.5602 4.0089 -0.3824 53 1 3.1049 3.6150 -1.1747 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174661.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:08 Heat of formation + Delta-G solvation = 2.507125 kcal Electronic energy + Delta-G solvation = -31058.059070 eV Core-core repulsion = 27122.465580 eV Total energy + Delta-G solvation = -3935.593490 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.67373 -40.30840 -39.32654 -37.27078 -36.52065 -34.50375 -33.14139 -31.90373 -31.73869 -31.40246 -29.71750 -28.09599 -27.53939 -25.84825 -24.68873 -24.10277 -23.55725 -23.14756 -21.41700 -20.58215 -20.41861 -18.58645 -18.24658 -17.79769 -17.39308 -17.01038 -16.97686 -16.39434 -15.99737 -15.83259 -15.58331 -15.29610 -15.19087 -15.06176 -14.90644 -14.54488 -14.34222 -14.06960 -14.01314 -13.74705 -13.57812 -13.40851 -13.25611 -13.19068 -12.97633 -12.84947 -12.67660 -12.51321 -12.46430 -12.23812 -12.15776 -12.07507 -11.98969 -11.58661 -11.50728 -11.18711 -10.99803 -10.82636 -10.45338 -10.42009 -9.90679 -9.28814 -9.22433 -8.93252 -8.04039 -6.25574 0.28610 0.43049 1.34492 1.35527 1.43363 1.56485 1.81450 2.38774 2.80107 2.95202 3.13602 3.41789 3.58305 3.98431 4.03475 4.04123 4.15041 4.23817 4.24847 4.28792 4.30304 4.44216 4.50733 4.52757 4.54706 4.60323 4.65395 4.66879 4.70760 4.75696 4.76858 4.87740 4.91581 4.92248 5.06316 5.09939 5.15432 5.24976 5.31213 5.39203 5.43115 5.44026 5.50352 5.56868 5.63599 5.63979 5.79923 5.91914 6.07109 6.08763 6.13159 6.21238 6.30603 6.40058 6.65441 6.95051 7.16052 7.44450 8.90474 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014528 B = 0.002557 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.883284 B =10947.088350 C =12170.289258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C 0.220 3.780 4 H 0.000 1.000 5 C -0.549 4.549 6 H 0.041 0.959 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.941 3.059 10 H -0.283 1.283 11 H -0.278 1.278 12 H -0.273 1.273 13 N -0.525 5.525 14 C 0.062 3.938 15 C 0.072 3.928 16 N -0.546 5.546 17 C 0.047 3.953 18 C 0.509 3.491 19 O -0.553 6.553 20 N -0.577 5.577 21 C 0.070 3.930 22 C 0.127 3.873 23 C -0.134 4.134 24 C -0.109 4.109 25 C -0.129 4.129 26 C -0.117 4.117 27 C -0.135 4.135 28 C 0.079 3.921 29 C 0.071 3.929 30 H 0.048 0.952 31 H 0.030 0.970 32 H 0.058 0.942 33 H 0.036 0.964 34 H 0.062 0.938 35 H 0.262 0.738 36 H 0.012 0.988 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.098 0.902 40 H 0.133 0.867 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.139 0.861 46 H 0.153 0.847 47 H 0.149 0.851 48 H 0.137 0.863 49 H 0.103 0.897 50 H 0.047 0.953 51 H 0.067 0.933 52 H 0.056 0.944 53 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.869 14.158 -24.050 28.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 C 0.113 3.887 4 H 0.018 0.982 5 C -0.588 4.588 6 H 0.059 0.941 7 C -0.176 4.176 8 N -0.548 5.548 9 Si 0.767 3.233 10 H -0.208 1.208 11 H -0.203 1.203 12 H -0.199 1.199 13 N -0.249 5.249 14 C -0.067 4.067 15 C -0.055 4.055 16 N -0.272 5.272 17 C -0.083 4.083 18 C 0.298 3.702 19 O -0.429 6.429 20 N -0.307 5.307 21 C -0.070 4.070 22 C 0.036 3.964 23 C -0.154 4.154 24 C -0.128 4.128 25 C -0.147 4.147 26 C -0.135 4.135 27 C -0.155 4.155 28 C -0.049 4.049 29 C -0.058 4.058 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.030 0.970 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.116 0.884 40 H 0.151 0.849 41 H 0.110 0.890 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.117 0.883 45 H 0.157 0.843 46 H 0.171 0.829 47 H 0.167 0.833 48 H 0.155 0.845 49 H 0.122 0.878 50 H 0.065 0.935 51 H 0.085 0.915 52 H 0.074 0.926 53 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -7.482 14.176 -23.411 28.372 hybrid contribution 1.578 -0.123 0.882 1.813 sum -5.903 14.053 -22.528 27.200 Atomic orbital electron populations 1.21559 0.96028 0.99916 1.00668 1.21446 0.94669 0.97681 1.00567 1.19034 0.91509 0.91802 0.86385 0.98207 1.21917 0.94334 1.37441 1.05152 0.94080 1.25533 1.01464 0.95007 0.95551 1.69977 1.36107 1.38986 1.09729 0.85884 0.81961 0.77893 0.77514 1.20848 1.20335 1.19880 1.62639 1.57173 1.01398 1.03674 1.22015 0.96427 0.98094 0.90115 1.22183 0.99391 0.86331 0.97576 1.61677 1.60767 1.03082 1.01635 1.22053 1.00224 0.91483 0.94576 1.21309 0.81480 0.87233 0.80131 1.90745 1.35864 1.77005 1.39250 1.45633 1.39450 1.16001 1.29618 1.22221 0.89563 1.03303 0.91949 1.17864 0.91581 0.85872 1.01123 1.21358 1.00956 0.91277 1.01792 1.21400 0.94869 0.98026 0.98457 1.21526 0.94573 0.98810 0.99791 1.21301 1.00930 0.91935 0.99375 1.21242 0.94043 0.98799 1.01375 1.21987 0.96323 0.97325 0.89278 1.21800 0.97234 0.90120 0.96667 0.93302 0.95096 0.92265 0.94508 0.91996 0.92876 0.96966 0.90405 0.92664 0.88395 0.84926 0.89036 0.90536 0.89521 0.88281 0.84308 0.82912 0.83316 0.84470 0.87841 0.93539 0.91483 0.92600 0.97412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.91 9.80 71.98 0.71 -4.21 16 2 C -0.11 -5.03 5.07 30.59 0.15 -4.88 16 3 C 0.22 11.36 1.75 44.17 0.08 11.43 16 4 H 0.00 0.00 8.11 -2.39 -0.02 -0.02 16 5 C -0.55 -31.33 7.13 25.60 0.18 -31.15 16 6 H 0.04 2.44 5.80 -2.91 -0.02 2.43 16 7 C 0.02 1.39 5.29 84.65 0.45 1.84 16 8 N -0.91 -53.23 11.29 21.45 0.24 -52.99 16 9 Si 0.94 45.99 29.54 68.60 2.03 48.01 16 10 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 13 N -0.52 -22.86 4.15 -874.89 -3.63 -26.49 16 14 C 0.06 2.43 4.96 86.31 0.43 2.86 16 15 C 0.07 2.07 5.61 86.31 0.48 2.56 16 16 N -0.55 -16.90 4.39 -900.30 -3.95 -20.85 16 17 C 0.05 0.99 3.88 85.55 0.33 1.32 16 18 C 0.51 13.53 7.02 87.65 0.62 14.14 16 19 O -0.55 -20.92 14.17 -3.05 -0.04 -20.96 16 20 N -0.58 -11.50 2.97 -654.55 -1.95 -13.45 16 21 C 0.07 0.66 9.89 127.77 1.26 1.92 16 22 C 0.13 2.81 5.06 38.15 0.19 3.01 16 23 C -0.13 -2.38 9.66 22.39 0.22 -2.16 16 24 C -0.11 -1.63 10.04 22.25 0.22 -1.40 16 25 C -0.13 -2.01 10.04 22.29 0.22 -1.78 16 26 C -0.12 -2.27 10.04 22.25 0.22 -2.05 16 27 C -0.13 -3.24 9.03 22.39 0.20 -3.04 16 28 C 0.08 2.75 5.27 86.31 0.45 3.20 16 29 C 0.07 3.09 5.32 86.31 0.46 3.55 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.06 2.17 7.75 -2.39 -0.02 2.16 16 33 H 0.04 1.70 6.12 -2.38 -0.01 1.68 16 34 H 0.06 3.37 5.95 -2.39 -0.01 3.35 16 35 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 36 H 0.01 0.56 6.51 -2.39 -0.02 0.54 16 37 H 0.08 2.96 6.07 -2.39 -0.01 2.95 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.10 2.26 8.06 -2.38 -0.02 2.24 16 40 H 0.13 2.03 7.77 -2.39 -0.02 2.01 16 41 H 0.09 1.41 7.71 -2.39 -0.02 1.39 16 42 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 43 H 0.09 0.63 8.05 -2.39 -0.02 0.61 16 44 H 0.10 0.54 6.56 -2.39 -0.02 0.52 16 45 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 46 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 47 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 48 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 49 H 0.10 2.76 8.06 -2.91 -0.02 2.74 16 50 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.07 2.50 6.14 -2.39 -0.01 2.49 16 52 H 0.06 2.47 8.12 -2.38 -0.02 2.45 16 53 H 0.01 0.39 6.88 -2.38 -0.02 0.37 16 Total: -1.00 -75.26 407.62 0.46 -74.80 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.88 Total: 16.76 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 6.89 Total: -4.84 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -9.29 Total: -113.78 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.04 Total: -20.96 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -75.26 0.46 -74.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174661.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.307 kcal (2) G-P(sol) polarization free energy of solvation -75.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds