Wall clock time and date at job start Wed Apr 1 2020 03:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46856 * 2 1 4 4 C 1.52996 * 109.47533 * 120.00157 * 2 1 3 5 5 H 1.09004 * 109.46666 * 294.45621 * 4 2 1 6 6 C 1.50699 * 109.47454 * 174.45556 * 4 2 1 7 7 O 1.21284 * 119.99541 * 264.79713 * 6 4 2 8 8 N 1.34769 * 120.00144 * 84.79425 * 6 4 2 9 9 C 1.46492 * 120.00216 * 174.42410 * 8 6 4 10 10 C 1.53001 * 109.47595 * 180.02562 * 9 8 6 11 11 H 1.09006 * 110.01325 * 305.70250 * 10 9 8 12 12 C 1.53865 * 110.03439 * 67.08948 * 10 9 8 13 13 C 1.54266 * 106.60276 * 119.28520 * 12 10 9 14 14 C 1.54898 * 104.19064 * 23.61476 * 13 12 10 15 15 H 1.08993 * 110.75532 * 80.37006 * 14 13 12 16 16 N 1.46495 * 110.75519 * 203.56124 * 14 13 12 17 17 C 1.36943 * 119.99779 * 273.54453 * 16 14 13 18 18 H 1.07998 * 119.99785 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99960 * 180.02562 * 17 16 14 20 20 N 1.31612 * 119.99901 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99701 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47171 * 60.00009 * 21 19 17 23 23 H 1.48496 * 109.46876 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47208 * 300.00055 * 21 19 17 25 25 C 1.54263 * 110.03672 * 184.31173 * 10 9 8 26 26 C 1.50704 * 109.47078 * 54.45175 * 4 2 1 27 27 C 1.38677 * 120.42013 * 240.00313 * 26 4 2 28 28 C 1.38620 * 118.41912 * 179.97438 * 27 26 4 29 29 C 1.38227 * 119.16354 * 359.97438 * 28 27 26 30 30 N 1.31854 * 120.76504 * 0.02562 * 29 28 27 31 31 C 1.31886 * 121.72266 * 359.97438 * 30 29 28 32 32 H 1.09004 * 109.47360 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47301 * 299.99679 * 1 2 3 34 34 H 1.08998 * 109.47580 * 59.99756 * 1 2 3 35 35 H 1.08997 * 109.46884 * 240.00637 * 2 1 3 36 36 H 1.09004 * 109.47137 * 173.57074 * 3 2 1 37 37 H 1.08999 * 109.47143 * 293.57325 * 3 2 1 38 38 H 1.09000 * 109.47398 * 53.57322 * 3 2 1 39 39 H 0.97004 * 120.00351 * 354.42373 * 8 6 4 40 40 H 1.08999 * 109.47161 * 299.99988 * 9 8 6 41 41 H 1.09003 * 109.47387 * 59.99968 * 9 8 6 42 42 H 1.09001 * 110.03591 * 238.57685 * 12 10 9 43 43 H 1.09002 * 110.03244 * 359.95348 * 12 10 9 44 44 H 1.08999 * 110.48582 * 142.28608 * 13 12 10 45 45 H 1.08990 * 110.48895 * 264.80577 * 13 12 10 46 46 H 0.97001 * 120.00364 * 93.54234 * 16 14 13 47 47 H 0.97002 * 119.99713 * 179.97438 * 20 19 17 48 48 H 1.09005 * 110.48678 * 335.78171 * 25 10 9 49 49 H 1.09004 * 110.48732 * 98.42095 * 25 10 9 50 50 H 1.08002 * 120.78603 * 359.97438 * 27 26 4 51 51 H 1.08004 * 120.42136 * 179.97438 * 28 27 26 52 52 H 1.08001 * 119.62029 * 179.72426 * 29 28 27 53 53 H 1.08001 * 119.61734 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.7600 -0.1533 2.1364 6 6 3.5408 -0.8412 1.1824 7 8 4.0494 -1.8530 0.7481 8 7 4.3176 0.1757 1.6052 9 6 5.7727 0.0141 1.6553 10 6 6.4121 1.3063 2.1674 11 1 6.0846 2.1506 1.5607 12 6 6.0298 1.5359 3.6400 13 6 7.3483 1.5494 4.4408 14 6 8.4236 1.9364 3.3953 15 1 8.4309 3.0136 3.2293 16 7 9.7472 1.4686 3.8143 17 6 10.5188 2.2449 4.6373 18 1 10.1517 3.2020 4.9771 19 6 11.7731 1.8019 5.0340 20 7 12.2206 0.6357 4.6194 21 14 12.8259 2.8612 6.1561 22 1 12.1070 3.0944 7.4344 23 1 14.1099 2.1674 6.4303 24 1 13.0974 4.1634 5.4962 25 6 7.9496 1.1888 2.1233 26 6 1.4287 -2.0969 1.3198 27 6 0.6466 -2.4629 2.4049 28 6 0.1043 -3.7384 2.4269 29 6 0.3589 -4.5969 1.3739 30 7 1.1075 -4.2147 0.3580 31 6 1.6396 -3.0092 0.3035 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8901 34 1 -0.3634 0.5138 -0.8899 35 1 1.8932 -0.5137 -0.8900 36 1 3.1238 1.4447 0.1151 37 1 1.7735 1.9221 -0.9419 38 1 1.5857 1.9885 0.8269 39 1 3.9132 1.0147 1.8765 40 1 6.0243 -0.8064 2.3272 41 1 6.1484 -0.2063 0.6561 42 1 5.5175 2.4920 3.7482 43 1 5.3880 0.7272 3.9897 44 1 7.3041 2.2936 5.2360 45 1 7.5535 0.5621 4.8545 46 1 10.0770 0.6091 3.5088 47 1 13.0973 0.3264 4.8963 48 1 8.2535 0.1426 2.1604 49 1 8.3435 1.6699 1.2280 50 1 0.4644 -1.7705 3.2135 51 1 -0.5093 -4.0575 3.2564 52 1 -0.0562 -5.5939 1.3856 53 1 2.2471 -2.7317 -0.5452 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263923997.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:02 Heat of formation + Delta-G solvation = -36.254365 kcal Electronic energy + Delta-G solvation = -30171.710238 eV Core-core repulsion = 26234.435924 eV Total energy + Delta-G solvation = -3937.274314 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.86018 -40.50458 -39.42522 -37.20949 -36.35144 -34.98667 -33.47081 -32.58695 -32.32095 -30.49247 -29.14257 -28.20734 -27.87790 -25.75578 -24.76304 -24.57758 -23.45100 -22.03174 -21.32191 -20.85987 -20.44655 -19.14461 -18.35157 -18.04416 -17.34368 -16.97151 -16.84076 -16.70353 -16.20881 -16.00534 -15.69819 -15.35745 -15.16152 -14.95484 -14.55875 -14.36053 -14.26647 -14.01748 -13.91999 -13.73829 -13.58682 -13.45113 -13.29000 -12.97465 -12.93245 -12.83614 -12.66991 -12.38037 -12.15489 -12.08690 -11.96708 -11.81293 -11.75645 -11.68228 -11.63368 -11.51403 -11.23661 -10.95343 -10.88089 -10.56343 -10.35849 -10.06993 -9.85491 -8.97861 -7.93659 -5.21929 0.17156 0.38963 1.46498 1.49680 1.55764 1.59984 2.17028 2.56854 2.91628 3.38453 3.41181 3.60712 3.70086 3.72040 3.78330 3.80618 3.88603 4.04328 4.11413 4.12183 4.22989 4.30574 4.36278 4.40704 4.49174 4.50872 4.63054 4.65782 4.67156 4.71956 4.79659 4.80644 4.85225 4.89322 4.92440 5.03060 5.03623 5.09730 5.14595 5.20904 5.21461 5.24062 5.30833 5.37700 5.42662 5.43544 5.47442 5.50453 5.57161 5.65128 5.81316 6.28981 6.56467 7.07472 7.25628 7.33923 8.13107 8.34260 9.29945 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.019129 B = 0.001910 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.358047 B =14655.524810 C =15302.058543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 C -0.158 4.158 4 C -0.050 4.050 5 H 0.134 0.866 6 C 0.515 3.485 7 O -0.580 6.580 8 N -0.709 5.709 9 C 0.133 3.867 10 C -0.082 4.082 11 H 0.105 0.895 12 C -0.107 4.107 13 C -0.139 4.139 14 C 0.164 3.836 15 H 0.054 0.946 16 N -0.738 5.738 17 C -0.237 4.237 18 H 0.077 0.923 19 C -0.081 4.081 20 N -0.973 5.973 21 Si 0.973 3.027 22 H -0.278 1.278 23 H -0.298 1.298 24 H -0.276 1.276 25 C -0.117 4.117 26 C -0.126 4.126 27 C -0.071 4.071 28 C -0.172 4.172 29 C 0.078 3.922 30 N -0.524 5.524 31 C 0.114 3.886 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.417 0.583 40 H 0.046 0.954 41 H 0.057 0.943 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.050 0.950 45 H 0.036 0.964 46 H 0.370 0.630 47 H 0.250 0.750 48 H 0.051 0.949 49 H 0.069 0.931 50 H 0.166 0.834 51 H 0.166 0.834 52 H 0.173 0.827 53 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.874 1.000 -6.911 33.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.097 4.097 3 C -0.216 4.216 4 C -0.072 4.072 5 H 0.152 0.848 6 C 0.302 3.698 7 O -0.460 6.460 8 N -0.362 5.362 9 C 0.009 3.991 10 C -0.102 4.102 11 H 0.123 0.877 12 C -0.144 4.144 13 C -0.180 4.180 14 C 0.055 3.945 15 H 0.072 0.928 16 N -0.376 5.376 17 C -0.369 4.369 18 H 0.095 0.905 19 C -0.273 4.273 20 N -0.624 5.624 21 Si 0.802 3.198 22 H -0.204 1.204 23 H -0.225 1.225 24 H -0.202 1.202 25 C -0.156 4.156 26 C -0.128 4.128 27 C -0.097 4.097 28 C -0.191 4.191 29 C -0.078 4.078 30 N -0.233 5.233 31 C -0.043 4.043 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.256 0.744 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.108 0.892 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.055 0.945 46 H 0.202 0.798 47 H 0.058 0.942 48 H 0.070 0.930 49 H 0.088 0.912 50 H 0.183 0.817 51 H 0.184 0.816 52 H 0.190 0.810 53 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -32.280 -0.142 -7.785 33.206 hybrid contribution 1.302 0.419 1.170 1.800 sum -30.977 0.277 -6.615 31.677 Atomic orbital electron populations 1.21786 0.93029 1.01475 1.03283 1.21034 0.97335 0.96676 0.94673 1.22054 1.01392 0.94194 1.03930 1.20391 0.89222 0.94163 1.03402 0.84833 1.20931 0.90052 0.82514 0.76275 1.90730 1.76439 1.31867 1.46915 1.46006 1.06681 1.16896 1.66607 1.21312 0.79747 0.97510 1.00519 1.21820 0.93787 0.97088 0.97455 0.87675 1.22141 0.96246 1.02827 0.93235 1.22895 0.96370 0.99851 0.98855 1.21484 0.83909 0.96518 0.92543 0.92825 1.42623 1.15767 1.21639 1.57612 1.19612 0.96913 1.00106 1.20292 0.90503 1.25595 0.99524 0.98703 1.03500 1.69822 1.19690 1.21706 1.51139 0.85214 0.77687 0.77929 0.78973 1.20385 1.22461 1.20229 1.22491 0.95066 1.00084 0.97951 1.20433 0.99752 0.96341 0.96278 1.21895 0.93800 0.97065 0.96914 1.22461 1.01669 0.94395 1.00584 1.23260 0.94033 1.01032 0.89493 1.67677 1.09940 1.18026 1.27666 1.22516 0.94775 0.88765 0.98234 0.94038 0.90544 0.91645 0.92445 0.92534 0.91494 0.89820 0.74434 0.93537 0.92418 0.89228 0.91367 0.93083 0.94538 0.79828 0.94166 0.93043 0.91203 0.81683 0.81603 0.80997 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.86 71.98 0.64 -0.58 16 2 C -0.08 -0.86 2.24 -10.80 -0.02 -0.89 16 3 C -0.16 -1.18 8.80 71.98 0.63 -0.55 16 4 C -0.05 -0.66 1.98 -12.29 -0.02 -0.69 16 5 H 0.13 0.89 7.93 -2.39 -0.02 0.87 16 6 C 0.52 10.60 6.41 87.66 0.56 11.16 16 7 O -0.58 -17.97 14.60 -3.04 -0.04 -18.01 16 8 N -0.71 -11.68 4.35 -463.08 -2.01 -13.69 16 9 C 0.13 2.97 4.70 86.38 0.41 3.38 16 10 C -0.08 -1.74 2.97 -10.07 -0.03 -1.77 16 11 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 12 C -0.11 -2.28 6.15 31.32 0.19 -2.09 16 13 C -0.14 -4.59 6.51 31.67 0.21 -4.38 16 14 C 0.16 6.20 3.53 46.31 0.16 6.37 16 15 H 0.05 2.02 8.12 -2.39 -0.02 2.00 16 16 N -0.74 -37.42 5.26 -316.72 -1.66 -39.08 16 17 C -0.24 -13.20 9.98 84.03 0.84 -12.36 16 18 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 19 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 20 N -0.97 -60.61 13.06 21.65 0.28 -60.32 16 21 Si 0.97 46.39 29.55 68.60 2.03 48.41 16 22 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 23 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 C -0.12 -3.57 5.98 31.69 0.19 -3.38 16 26 C -0.13 -2.19 3.14 -19.77 -0.06 -2.25 16 27 C -0.07 -0.92 9.81 22.47 0.22 -0.70 16 28 C -0.17 -2.19 10.11 22.36 0.23 -1.97 16 29 C 0.08 1.38 11.18 84.69 0.95 2.33 16 30 N -0.52 -12.93 10.36 -195.84 -2.03 -14.96 16 31 C 0.11 2.69 9.08 84.67 0.77 3.46 16 32 H 0.04 0.50 7.02 -2.38 -0.02 0.49 16 33 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 34 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.06 0.89 7.61 -2.39 -0.02 0.87 16 36 H 0.06 0.51 5.67 -2.38 -0.01 0.50 16 37 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.42 4.01 7.17 -92.71 -0.66 3.35 16 40 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.07 1.37 7.59 -2.39 -0.02 1.35 16 44 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.37 20.48 7.73 -92.71 -0.72 19.76 16 47 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 48 H 0.05 1.76 7.74 -2.38 -0.02 1.74 16 49 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 50 H 0.17 0.99 8.00 -2.91 -0.02 0.97 16 51 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 52 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 53 H 0.14 3.55 6.98 -2.91 -0.02 3.53 16 Total: -1.00 -77.51 418.83 2.40 -75.12 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: -0.48 Total: 31.68 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 6.32 Total: -9.14 kcal Atomic # 7 Polarization: -122.63 SS G_CDS: -5.42 Total: -128.06 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.04 Total: -18.01 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -77.51 2.40 -75.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263923997.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.864 kcal (2) G-P(sol) polarization free energy of solvation -77.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds