Wall clock time and date at job start Wed Apr 1 2020 03:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47185 * 2 1 4 4 C 1.53002 * 109.46997 * 119.99895 * 2 1 3 5 5 H 1.09003 * 109.46852 * 305.76824 * 4 2 1 6 6 C 1.50691 * 109.47348 * 65.77103 * 4 2 1 7 7 O 1.21284 * 120.00474 * 108.92384 * 6 4 2 8 8 N 1.34780 * 120.00158 * 288.92616 * 6 4 2 9 9 C 1.46507 * 120.00041 * 175.67620 * 8 6 4 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 8 6 11 11 H 1.08997 * 110.02220 * 305.70547 * 10 9 8 12 12 C 1.53875 * 110.03085 * 67.09518 * 10 9 8 13 13 C 1.54273 * 106.59945 * 119.28088 * 12 10 9 14 14 C 1.54889 * 104.19296 * 23.61301 * 13 12 10 15 15 H 1.08995 * 110.75671 * 80.37094 * 14 13 12 16 16 N 1.46504 * 110.75657 * 203.55741 * 14 13 12 17 17 C 1.36934 * 119.99754 * 273.54900 * 16 14 13 18 18 H 1.07997 * 120.00387 * 359.97438 * 17 16 14 19 19 C 1.38817 * 119.99750 * 179.97438 * 17 16 14 20 20 N 1.31623 * 119.99705 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99863 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47115 * 90.00048 * 21 19 17 23 23 H 1.48506 * 109.46974 * 209.99954 * 21 19 17 24 24 H 1.48498 * 109.47009 * 329.99608 * 21 19 17 25 25 C 1.54260 * 110.03142 * 184.31150 * 10 9 8 26 26 C 1.50700 * 109.47316 * 185.77325 * 4 2 1 27 27 C 1.38671 * 120.41809 * 119.99418 * 26 4 2 28 28 C 1.38631 * 118.41842 * 179.97438 * 27 26 4 29 29 C 1.38230 * 119.15949 * 0.02562 * 28 27 26 30 30 N 1.31850 * 120.76386 * 359.97438 * 29 28 27 31 31 C 1.31882 * 121.72798 * 0.02562 * 30 29 28 32 32 H 1.08992 * 109.47167 * 306.42201 * 1 2 3 33 33 H 1.09000 * 109.46943 * 66.42232 * 1 2 3 34 34 H 1.08997 * 109.46883 * 186.42062 * 1 2 3 35 35 H 1.09003 * 109.47153 * 239.99762 * 2 1 3 36 36 H 1.09001 * 109.47239 * 179.97438 * 3 2 1 37 37 H 1.08998 * 109.47092 * 299.99554 * 3 2 1 38 38 H 1.08993 * 109.47246 * 59.99734 * 3 2 1 39 39 H 0.96997 * 119.99892 * 355.68111 * 8 6 4 40 40 H 1.08991 * 109.47357 * 300.00077 * 9 8 6 41 41 H 1.09002 * 109.46683 * 60.00566 * 9 8 6 42 42 H 1.09003 * 110.03594 * 238.56819 * 12 10 9 43 43 H 1.09005 * 110.03490 * 359.95170 * 12 10 9 44 44 H 1.09001 * 110.48609 * 142.28597 * 13 12 10 45 45 H 1.08993 * 110.48690 * 264.79806 * 13 12 10 46 46 H 0.96999 * 119.99936 * 93.54493 * 16 14 13 47 47 H 0.97006 * 119.99535 * 180.02562 * 20 19 17 48 48 H 1.08995 * 110.48873 * 335.78325 * 25 10 9 49 49 H 1.08998 * 110.48647 * 98.43067 * 25 10 9 50 50 H 1.07996 * 120.79431 * 0.02562 * 27 26 4 51 51 H 1.07999 * 120.42152 * 180.02562 * 28 27 26 52 52 H 1.08000 * 119.61343 * 179.72479 * 29 28 27 53 53 H 1.08001 * 119.61658 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5948 -0.2704 2.1362 6 6 1.6578 -2.1772 1.1800 7 8 2.5091 -3.0193 0.9873 8 7 0.3697 -2.5438 1.3322 9 6 -0.0162 -3.9479 1.1709 10 6 -1.5229 -4.0916 1.3951 11 1 -1.7984 -3.6686 2.3612 12 6 -2.2935 -3.3801 0.2692 13 6 -3.1388 -4.4603 -0.4371 14 6 -3.3070 -5.5694 0.6309 15 1 -4.0974 -5.3107 1.3354 16 7 -3.5808 -6.8621 -0.0017 17 6 -4.8670 -7.2121 -0.3153 18 1 -5.6795 -6.5354 -0.0960 19 6 -5.1264 -8.4368 -0.9152 20 7 -4.1359 -9.2613 -1.1830 21 14 -6.8810 -8.9145 -1.3424 22 1 -7.1984 -8.4540 -2.7180 23 1 -7.0237 -10.3909 -1.2694 24 1 -7.8155 -8.2786 -0.3794 25 6 -1.9265 -5.5792 1.3351 26 6 3.5402 -0.5987 1.3229 27 6 4.1419 0.0173 2.4099 28 6 5.5250 0.1069 2.4352 29 6 6.2533 -0.4167 1.3834 30 7 5.6471 -0.9958 0.3657 31 6 4.3336 -1.0988 0.3081 32 1 -0.3633 0.6101 0.8269 33 1 -0.3633 0.4111 -0.9419 34 1 -0.3633 -1.0212 0.1149 35 1 1.8934 -0.5139 -0.8900 36 1 3.1301 1.4425 0.0005 37 1 1.6768 1.9563 -0.8900 38 1 1.6767 1.9563 0.8899 39 1 -0.3017 -1.8780 1.5484 40 1 0.2349 -4.2803 0.1637 41 1 0.5188 -4.5576 1.8989 42 1 -2.9437 -2.6125 0.6889 43 1 -1.5942 -2.9318 -0.4366 44 1 -4.1099 -4.0572 -0.7245 45 1 -2.6130 -4.8455 -1.3106 46 1 -2.8510 -7.4701 -0.1984 47 1 -4.3172 -10.1169 -1.6026 48 1 -1.2038 -6.1473 0.7494 49 1 -2.0131 -5.9918 2.3403 50 1 3.5471 0.4171 3.2178 51 1 6.0273 0.5797 3.2662 52 1 7.3310 -0.3469 1.3934 53 1 3.8727 -1.5796 -0.5421 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263923998.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:07 Heat of formation + Delta-G solvation = -31.376803 kcal Electronic energy + Delta-G solvation = -30300.978147 eV Core-core repulsion = 26363.915340 eV Total energy + Delta-G solvation = -3937.062807 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.88148 -40.52137 -39.40889 -37.23883 -36.37892 -34.99774 -33.44616 -32.58262 -32.29700 -30.49624 -29.14085 -28.20563 -27.88866 -25.75133 -24.75820 -24.58445 -23.48335 -21.95729 -21.35256 -20.89641 -20.44826 -19.14157 -18.38076 -18.05820 -17.38444 -16.97240 -16.75966 -16.69894 -16.17921 -16.02305 -15.67904 -15.30640 -15.24967 -15.02486 -14.48415 -14.39228 -14.29559 -14.03495 -13.91406 -13.70111 -13.58357 -13.38214 -13.35064 -12.96140 -12.94487 -12.82659 -12.69352 -12.35297 -12.15935 -12.05896 -11.91249 -11.81434 -11.76757 -11.66717 -11.62725 -11.50441 -11.22469 -10.93535 -10.88787 -10.57447 -10.35418 -10.03006 -9.85813 -8.97611 -7.93774 -5.21869 0.18712 0.40091 1.46549 1.48396 1.56717 1.59648 2.17566 2.56743 2.92579 3.38544 3.40510 3.60008 3.68919 3.71834 3.78334 3.81440 3.88834 4.04597 4.11053 4.11951 4.23311 4.30902 4.35986 4.41276 4.49591 4.51015 4.63090 4.66064 4.67458 4.72797 4.79787 4.80871 4.85370 4.88695 4.92773 5.03250 5.03907 5.10351 5.14921 5.21311 5.21980 5.24812 5.31109 5.37538 5.43228 5.44339 5.47939 5.50825 5.58161 5.65704 5.81889 6.29042 6.55388 7.08164 7.25260 7.33986 8.13227 8.34311 9.30012 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.023244 B = 0.001888 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.304212 B =14827.746311 C =15374.136811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.079 4.079 3 C -0.138 4.138 4 C -0.050 4.050 5 H 0.138 0.862 6 C 0.513 3.487 7 O -0.581 6.581 8 N -0.709 5.709 9 C 0.132 3.868 10 C -0.083 4.083 11 H 0.105 0.895 12 C -0.107 4.107 13 C -0.139 4.139 14 C 0.164 3.836 15 H 0.054 0.946 16 N -0.737 5.737 17 C -0.236 4.236 18 H 0.077 0.923 19 C -0.082 4.082 20 N -0.973 5.973 21 Si 0.972 3.028 22 H -0.289 1.289 23 H -0.298 1.298 24 H -0.267 1.267 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.071 4.071 28 C -0.170 4.170 29 C 0.077 3.923 30 N -0.524 5.524 31 C 0.112 3.888 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.041 0.959 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.418 0.582 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.050 0.950 45 H 0.036 0.964 46 H 0.370 0.630 47 H 0.249 0.751 48 H 0.051 0.949 49 H 0.069 0.931 50 H 0.167 0.833 51 H 0.168 0.832 52 H 0.173 0.827 53 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.525 29.598 10.793 34.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.098 4.098 3 C -0.195 4.195 4 C -0.072 4.072 5 H 0.156 0.844 6 C 0.300 3.700 7 O -0.460 6.460 8 N -0.364 5.364 9 C 0.008 3.992 10 C -0.102 4.102 11 H 0.123 0.877 12 C -0.145 4.145 13 C -0.179 4.179 14 C 0.055 3.945 15 H 0.072 0.928 16 N -0.376 5.376 17 C -0.368 4.368 18 H 0.095 0.905 19 C -0.274 4.274 20 N -0.624 5.624 21 Si 0.802 3.198 22 H -0.216 1.216 23 H -0.224 1.224 24 H -0.192 1.192 25 C -0.156 4.156 26 C -0.123 4.123 27 C -0.096 4.096 28 C -0.189 4.189 29 C -0.079 4.079 30 N -0.233 5.233 31 C -0.045 4.045 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.258 0.742 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.108 0.892 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.055 0.945 46 H 0.202 0.798 47 H 0.058 0.942 48 H 0.070 0.930 49 H 0.088 0.912 50 H 0.185 0.815 51 H 0.185 0.815 52 H 0.190 0.810 53 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.408 28.664 9.968 34.036 hybrid contribution -1.175 -0.974 -0.256 1.548 sum 14.233 27.690 9.712 32.614 Atomic orbital electron populations 1.22216 0.92979 1.03163 1.04008 1.21030 0.97291 0.96775 0.94708 1.21781 1.00281 0.94189 1.03284 1.20404 0.92000 0.91396 1.03379 0.84396 1.20963 0.82170 0.91487 0.75358 1.90743 1.50583 1.54447 1.50232 1.46187 1.08883 1.10102 1.71183 1.21328 0.94880 0.82359 1.00648 1.21824 0.92403 0.95174 1.00798 0.87706 1.22166 0.98303 0.97260 0.96776 1.22890 0.99057 0.97194 0.98785 1.21488 0.95135 0.85028 0.92808 0.92824 1.42628 1.05355 1.17439 1.72195 1.19649 0.86409 0.99811 1.30889 0.90470 1.25594 1.01214 0.97544 1.03028 1.69834 1.31868 1.10524 1.50138 0.85145 0.80059 0.76588 0.78034 1.21608 1.22445 1.19156 1.22488 0.96422 0.96211 1.00462 1.20392 0.95530 1.00174 0.96180 1.21887 0.95500 0.95408 0.96850 1.22465 0.94733 1.01139 1.00589 1.23254 1.01752 0.93397 0.89521 1.67646 1.11911 1.16087 1.27688 1.22401 0.89112 0.94834 0.98104 0.89602 0.91664 0.91888 0.92684 0.94006 0.91828 0.90386 0.74174 0.93373 0.92506 0.89209 0.91272 0.93072 0.94525 0.79826 0.94192 0.93025 0.91214 0.81544 0.81483 0.81003 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 8.65 71.98 0.62 -0.75 16 2 C -0.08 -0.91 2.24 -10.79 -0.02 -0.94 16 3 C -0.14 -1.27 8.86 71.98 0.64 -0.63 16 4 C -0.05 -0.66 2.02 -12.29 -0.02 -0.68 16 5 H 0.14 0.85 7.93 -2.39 -0.02 0.83 16 6 C 0.51 10.60 6.84 87.65 0.60 11.20 16 7 O -0.58 -18.14 14.78 -3.04 -0.04 -18.19 16 8 N -0.71 -11.75 4.07 -463.06 -1.88 -13.64 16 9 C 0.13 2.95 4.70 86.38 0.41 3.35 16 10 C -0.08 -1.75 2.97 -10.07 -0.03 -1.78 16 11 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 12 C -0.11 -2.29 6.15 31.32 0.19 -2.09 16 13 C -0.14 -4.56 6.51 31.67 0.21 -4.35 16 14 C 0.16 6.19 3.53 46.31 0.16 6.35 16 15 H 0.05 2.02 8.12 -2.39 -0.02 2.00 16 16 N -0.74 -37.36 5.26 -316.71 -1.66 -39.03 16 17 C -0.24 -13.10 9.98 84.04 0.84 -12.26 16 18 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 19 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 20 N -0.97 -60.66 13.06 21.65 0.28 -60.38 16 21 Si 0.97 46.48 29.55 68.60 2.03 48.51 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 25 C -0.12 -3.56 5.98 31.70 0.19 -3.37 16 26 C -0.12 -2.07 3.00 -19.77 -0.06 -2.13 16 27 C -0.07 -0.87 9.81 22.47 0.22 -0.65 16 28 C -0.17 -2.05 10.11 22.36 0.23 -1.83 16 29 C 0.08 1.33 11.18 84.69 0.95 2.28 16 30 N -0.52 -12.95 10.36 -195.85 -2.03 -14.98 16 31 C 0.11 2.67 9.03 84.67 0.76 3.44 16 32 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.62 4.62 -2.39 -0.01 0.61 16 35 H 0.05 0.90 7.62 -2.39 -0.02 0.88 16 36 H 0.04 0.52 7.00 -2.39 -0.02 0.50 16 37 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.42 4.13 6.29 -92.71 -0.58 3.54 16 40 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.07 1.38 7.36 -2.38 -0.02 1.36 16 44 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.37 20.47 7.73 -92.71 -0.72 19.75 16 47 H 0.25 15.12 8.31 -92.70 -0.77 14.35 16 48 H 0.05 1.76 7.74 -2.39 -0.02 1.74 16 49 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 50 H 0.17 0.82 8.00 -2.91 -0.02 0.80 16 51 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 52 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 53 H 0.13 3.44 7.34 -2.91 -0.02 3.42 16 Total: -1.00 -78.03 417.04 2.63 -75.39 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: -0.40 Total: 31.44 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: 6.34 Total: -9.13 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -5.30 Total: -128.02 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.04 Total: -18.19 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -78.03 2.63 -75.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263923998.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.017 kcal (2) G-P(sol) polarization free energy of solvation -78.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds