Wall clock time and date at job start Wed Apr 1 2020 03:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.46990 * 2 1 4 4 C 1.53010 * 109.47145 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46510 * 305.92644 * 4 3 2 6 6 C 1.50695 * 109.47465 * 185.92699 * 4 3 2 7 7 O 1.21288 * 119.99935 * 247.05144 * 6 4 3 8 8 N 1.34770 * 120.00381 * 67.04310 * 6 4 3 9 9 C 1.46498 * 120.00255 * 185.49874 * 8 6 4 10 10 C 1.46500 * 119.99782 * 5.50061 * 8 6 4 11 11 C 1.53042 * 109.46184 * 234.38192 * 10 8 6 12 12 C 1.53196 * 109.31279 * 178.60334 * 11 10 8 13 13 N 1.46926 * 108.76784 * 54.65682 * 12 11 10 14 14 C 1.36929 * 120.63358 * 126.40788 * 13 12 11 15 15 H 1.08008 * 119.99515 * 328.43273 * 14 13 12 16 16 C 1.38807 * 120.00403 * 148.43928 * 14 13 12 17 17 N 1.31624 * 119.99879 * 349.09380 * 16 14 13 18 18 Si 1.86801 * 120.00288 * 169.10219 * 16 14 13 19 19 H 1.48500 * 109.47360 * 89.99370 * 18 16 14 20 20 H 1.48502 * 109.47139 * 209.99457 * 18 16 14 21 21 H 1.48504 * 109.46934 * 329.99375 * 18 16 14 22 22 C 1.46933 * 118.73630 * 306.38298 * 13 12 11 23 23 C 1.53039 * 109.46037 * 114.32797 * 10 8 6 24 24 C 1.50699 * 109.47045 * 65.91956 * 4 3 2 25 25 C 1.38227 * 119.61522 * 85.00392 * 24 4 3 26 26 C 1.38627 * 119.16288 * 180.02562 * 25 24 4 27 27 C 1.38679 * 118.41981 * 359.97438 * 26 25 24 28 28 C 1.38187 * 119.16207 * 0.27807 * 27 26 25 29 29 N 1.31848 * 119.62183 * 265.02284 * 24 4 3 30 30 H 1.08997 * 109.47568 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47288 * 300.00061 * 1 2 3 32 32 H 1.08991 * 109.47356 * 59.99783 * 1 2 3 33 33 H 1.09002 * 109.46548 * 239.99861 * 2 1 3 34 34 H 1.09000 * 109.47191 * 120.00361 * 2 1 3 35 35 H 1.09002 * 109.47588 * 60.00499 * 3 2 1 36 36 H 1.08998 * 109.47498 * 299.99659 * 3 2 1 37 37 H 1.09006 * 109.47199 * 85.26075 * 9 8 6 38 38 H 1.09006 * 109.47202 * 205.25789 * 9 8 6 39 39 H 1.08993 * 109.47313 * 325.25908 * 9 8 6 40 40 H 1.08996 * 109.46219 * 354.35603 * 10 8 6 41 41 H 1.08996 * 109.49548 * 298.56559 * 11 10 8 42 42 H 1.08994 * 109.49515 * 58.66563 * 11 10 8 43 43 H 1.08998 * 109.59560 * 294.86755 * 12 11 10 44 44 H 1.09000 * 109.69907 * 174.50566 * 12 11 10 45 45 H 0.97000 * 119.99928 * 180.02562 * 17 16 14 46 46 H 1.09000 * 109.58366 * 293.82335 * 22 13 12 47 47 H 1.08994 * 109.70176 * 173.46830 * 22 13 12 48 48 H 1.08998 * 109.50155 * 301.33583 * 23 10 8 49 49 H 1.09000 * 109.50022 * 61.40143 * 23 10 8 50 50 H 1.08004 * 120.42080 * 0.04105 * 25 24 4 51 51 H 1.07999 * 120.79123 * 180.02562 * 26 25 24 52 52 H 1.07994 * 120.42035 * 180.02562 * 27 26 25 53 53 H 1.07994 * 119.62162 * 179.70121 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9336 0.8393 0.8313 6 6 4.0725 2.8556 0.1461 7 8 4.6604 3.3885 -0.7713 8 7 3.8684 3.5274 1.2964 9 6 4.2486 4.9385 1.3980 10 6 3.2665 2.8464 2.4454 11 6 2.0425 3.6328 2.9204 12 6 1.3955 2.8994 4.0997 13 7 2.4130 2.6827 5.1372 14 6 2.1949 3.0937 6.4250 15 1 1.5919 3.9689 6.6176 16 6 2.7488 2.3859 7.4828 17 7 3.2988 1.2090 7.2709 18 14 2.7135 3.1035 9.2071 19 1 1.4699 2.6750 9.8963 20 1 3.8932 2.6200 9.9687 21 1 2.7495 4.5859 9.1272 22 6 3.6688 2.0158 4.7668 23 6 4.2901 2.7589 3.5798 24 6 4.0718 0.8629 -1.2981 25 6 4.2004 1.6791 -2.4063 26 6 4.6623 1.1360 -3.5952 27 6 4.9797 -0.2136 -3.6250 28 6 4.8205 -0.9683 -2.4784 29 7 4.3828 -0.4167 -1.3632 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8932 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.4389 5.5613 1.0175 38 1 4.4400 5.1891 2.4415 39 1 5.1496 5.1153 0.8107 40 1 2.9616 1.8416 2.1532 41 1 2.3506 4.6294 3.2364 42 1 1.3241 3.7149 2.1050 43 1 1.0061 1.9386 3.7633 44 1 0.5825 3.5015 4.5053 45 1 3.6855 0.7142 8.0101 46 1 3.4646 0.9829 4.4848 47 1 4.3578 2.0348 5.6110 48 1 5.1715 2.2190 3.2338 49 1 4.5772 3.7638 3.8892 50 1 3.9443 2.7266 -2.3467 51 1 4.7732 1.7496 -4.4770 52 1 5.3428 -0.6700 -4.5340 53 1 5.0609 -2.0210 -2.4946 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265195686.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:49 Heat of formation + Delta-G solvation = 6.022393 kcal Electronic energy + Delta-G solvation = -32102.286265 eV Core-core repulsion = 28166.845209 eV Total energy + Delta-G solvation = -3935.441056 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.06570 -40.62213 -39.11884 -36.86089 -36.52861 -34.07492 -33.39064 -33.01836 -31.81567 -31.23430 -30.56972 -28.02137 -26.94854 -25.75831 -24.44387 -23.95269 -23.81494 -23.19330 -21.90024 -20.92908 -20.09480 -18.79184 -18.29562 -17.70837 -17.19761 -16.96005 -16.72736 -16.42976 -16.29249 -15.89205 -15.50960 -15.32893 -15.21377 -14.80792 -14.63277 -14.46209 -14.31986 -14.13535 -14.05108 -13.80204 -13.73103 -13.34767 -13.20927 -13.08028 -13.00452 -12.88486 -12.61655 -12.43734 -12.40163 -12.08376 -12.06864 -12.01367 -11.89980 -11.77691 -11.52054 -11.47367 -11.34470 -10.83920 -10.54953 -10.47593 -10.30470 -9.82816 -9.63377 -8.60341 -7.84435 -5.34338 0.22063 0.44514 1.45754 1.48548 1.50246 1.58631 1.90871 2.52925 2.90470 3.18148 3.31563 3.34927 3.70022 3.79399 3.90595 3.95853 3.98618 4.04638 4.10283 4.20219 4.27526 4.29435 4.32401 4.42395 4.49360 4.51913 4.62717 4.65520 4.69722 4.70230 4.74104 4.77387 4.85416 4.94267 4.95458 4.97290 4.99760 5.05614 5.11860 5.16763 5.25127 5.27841 5.33415 5.34924 5.37482 5.44978 5.48091 5.59442 5.68412 5.77234 5.86209 6.32674 6.44877 7.02426 7.11274 7.19244 7.88749 8.40821 9.21648 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.015985 B = 0.002919 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.270411 B = 9590.123102 C =10026.468081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.101 4.101 4 C -0.055 4.055 5 H 0.102 0.898 6 C 0.522 3.478 7 O -0.562 6.562 8 N -0.598 5.598 9 C 0.085 3.915 10 C 0.146 3.854 11 C -0.126 4.126 12 C 0.144 3.856 13 N -0.608 5.608 14 C -0.259 4.259 15 H 0.067 0.933 16 C -0.047 4.047 17 N -0.934 5.934 18 Si 0.964 3.036 19 H -0.285 1.285 20 H -0.296 1.296 21 H -0.270 1.270 22 C 0.184 3.816 23 C -0.137 4.137 24 C 0.120 3.880 25 C -0.152 4.152 26 C -0.091 4.091 27 C -0.167 4.167 28 C 0.077 3.923 29 N -0.501 5.501 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.022 0.978 44 H 0.060 0.940 45 H 0.249 0.751 46 H 0.001 0.999 47 H 0.054 0.946 48 H 0.056 0.944 49 H 0.058 0.942 50 H 0.146 0.854 51 H 0.155 0.845 52 H 0.165 0.835 53 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.946 0.417 -21.491 21.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C -0.139 4.139 4 C -0.077 4.077 5 H 0.120 0.880 6 C 0.310 3.690 7 O -0.442 6.442 8 N -0.328 5.328 9 C -0.057 4.057 10 C 0.043 3.957 11 C -0.166 4.166 12 C 0.018 3.982 13 N -0.332 5.332 14 C -0.390 4.390 15 H 0.084 0.916 16 C -0.243 4.243 17 N -0.580 5.580 18 Si 0.792 3.208 19 H -0.212 1.212 20 H -0.222 1.222 21 H -0.195 1.195 22 C 0.058 3.942 23 C -0.177 4.177 24 C -0.017 4.017 25 C -0.171 4.171 26 C -0.117 4.117 27 C -0.187 4.187 28 C -0.080 4.080 29 N -0.210 5.210 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.114 0.886 41 H 0.083 0.917 42 H 0.102 0.898 43 H 0.040 0.960 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.019 0.981 47 H 0.073 0.927 48 H 0.074 0.926 49 H 0.077 0.923 50 H 0.163 0.837 51 H 0.173 0.827 52 H 0.182 0.818 53 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -0.668 0.117 -21.086 21.097 hybrid contribution 0.482 0.523 0.736 1.024 sum -0.185 0.640 -20.350 20.361 Atomic orbital electron populations 1.21742 0.94557 1.02143 1.02159 1.21409 0.96582 0.95162 1.01960 1.21678 0.89580 0.99021 1.03650 1.20093 0.98643 0.92639 0.96350 0.88005 1.20489 0.78501 0.88111 0.81853 1.90581 1.43126 1.70766 1.39757 1.48041 1.60708 1.12171 1.11930 1.21669 1.01010 0.80171 1.02872 1.21272 0.93175 0.96846 0.84364 1.22237 0.96443 0.99500 0.98391 1.21026 0.91301 0.97109 0.88721 1.44258 1.14077 1.69399 1.05467 1.19465 1.30075 1.06121 0.83319 0.91559 1.25857 1.01539 0.95523 1.01355 1.70123 1.43542 1.13015 1.31351 0.85336 0.76722 0.78271 0.80461 1.21213 1.22249 1.19498 1.20479 0.87903 0.91846 0.93992 1.22397 0.97781 1.01214 0.96270 1.20513 0.96994 0.89897 0.94335 1.22570 0.99448 1.01955 0.93166 1.21985 0.95677 0.95879 0.98164 1.22482 1.00690 0.94686 1.00811 1.23172 0.95393 1.01455 0.87976 1.67366 1.11542 1.12388 1.29702 0.92247 0.92402 0.92198 0.92500 0.92465 0.89715 0.90905 0.91338 0.90459 0.91500 0.88636 0.91683 0.89764 0.95996 0.92167 0.94191 0.98080 0.92718 0.92555 0.92322 0.83658 0.82735 0.81756 0.80572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.91 71.98 0.71 -2.15 16 2 C -0.11 -2.56 5.73 30.59 0.18 -2.38 16 3 C -0.10 -2.32 4.20 30.59 0.13 -2.19 16 4 C -0.06 -1.48 1.65 -12.28 -0.02 -1.50 16 5 H 0.10 2.97 7.26 -2.39 -0.02 2.95 16 6 C 0.52 15.04 6.84 87.66 0.60 15.63 16 7 O -0.56 -18.15 12.49 -3.05 -0.04 -18.19 16 8 N -0.60 -16.28 2.76 -822.45 -2.27 -18.55 16 9 C 0.08 2.05 9.35 127.77 1.19 3.25 16 10 C 0.15 4.31 1.49 45.02 0.07 4.38 16 11 C -0.13 -3.64 4.95 30.67 0.15 -3.49 16 12 C 0.14 5.33 6.52 86.36 0.56 5.90 16 13 N -0.61 -28.54 2.98 -699.08 -2.09 -30.63 16 14 C -0.26 -13.60 9.58 84.03 0.80 -12.80 16 15 H 0.07 3.38 7.85 -2.91 -0.02 3.35 16 16 C -0.05 -2.56 5.04 84.86 0.43 -2.13 16 17 N -0.93 -53.83 11.08 21.65 0.24 -53.59 16 18 Si 0.96 43.77 29.57 68.60 2.03 45.80 16 19 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 20 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 22 C 0.18 8.43 5.25 86.36 0.45 8.89 16 23 C -0.14 -4.86 5.41 30.67 0.17 -4.70 16 24 C 0.12 3.26 4.96 42.55 0.21 3.47 16 25 C -0.15 -3.84 8.34 22.36 0.19 -3.65 16 26 C -0.09 -1.77 10.18 22.47 0.23 -1.55 16 27 C -0.17 -2.82 10.11 22.36 0.23 -2.59 16 28 C 0.08 1.57 11.18 84.67 0.95 2.52 16 29 N -0.50 -13.36 9.62 -183.89 -1.77 -15.13 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 1.36 6.92 -2.39 -0.02 1.35 16 34 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.08 1.93 5.04 -2.39 -0.01 1.92 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.08 1.85 6.59 -2.38 -0.02 1.84 16 39 H 0.07 1.68 7.50 -2.39 -0.02 1.66 16 40 H 0.10 2.83 4.51 -2.39 -0.01 2.82 16 41 H 0.06 1.92 7.46 -2.39 -0.02 1.90 16 42 H 0.08 2.00 7.52 -2.39 -0.02 1.98 16 43 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.06 2.18 7.93 -2.39 -0.02 2.16 16 45 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 46 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 47 H 0.05 2.90 6.13 -2.39 -0.01 2.89 16 48 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.06 2.11 6.97 -2.39 -0.02 2.09 16 50 H 0.15 3.94 5.69 -2.91 -0.02 3.92 16 51 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 52 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 53 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -65.09 403.63 4.22 -60.87 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.89 Total: 24.49 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 7.22 Total: 4.92 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -5.89 Total: -117.90 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.04 Total: -18.19 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -65.09 4.22 -60.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265195686.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.896 kcal (2) G-P(sol) polarization free energy of solvation -65.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds