Wall clock time and date at job start Wed Apr 1 2020 04:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46809 * 2 1 4 4 N 1.46502 * 109.47156 * 179.97438 * 3 2 1 5 5 C 1.34778 * 119.99521 * 90.00020 * 4 3 2 6 6 O 1.21288 * 119.99587 * 179.97438 * 5 4 3 7 7 C 1.50698 * 120.00208 * 0.02562 * 5 4 3 8 8 C 1.50700 * 109.46921 * 179.97438 * 7 5 4 9 9 C 1.38227 * 120.42081 * 265.00239 * 8 7 5 10 10 N 1.31856 * 120.76527 * 179.97438 * 9 8 7 11 11 C 1.31889 * 121.72444 * 359.97438 * 10 9 8 12 12 C 1.38183 * 120.76630 * 359.97438 * 11 10 9 13 13 C 1.38625 * 120.41961 * 84.96081 * 8 7 5 14 14 C 1.50709 * 120.78873 * 0.02562 * 13 8 7 15 15 C 1.46498 * 120.00221 * 270.00210 * 4 3 2 16 16 C 1.53035 * 109.46002 * 240.02791 * 15 4 3 17 17 C 1.53197 * 109.30985 * 178.60224 * 16 15 4 18 18 N 1.46923 * 108.76767 * 54.65606 * 17 16 15 19 19 C 1.36939 * 120.63511 * 126.40378 * 18 17 16 20 20 H 1.08001 * 119.99617 * 331.82573 * 19 18 17 21 21 C 1.38809 * 120.00069 * 151.82773 * 19 18 17 22 22 N 1.31619 * 120.00026 * 343.06964 * 21 19 18 23 23 Si 1.86800 * 120.00040 * 163.07306 * 21 19 18 24 24 H 1.48500 * 109.47099 * 359.97438 * 23 21 19 25 25 H 1.48488 * 109.47442 * 119.99698 * 23 21 19 26 26 H 1.48501 * 109.46920 * 239.99934 * 23 21 19 27 27 C 1.46928 * 118.73885 * 306.38380 * 18 17 16 28 28 C 1.53044 * 109.46025 * 119.97057 * 15 4 3 29 29 H 1.09001 * 109.47380 * 299.99495 * 1 2 3 30 30 H 1.09004 * 109.47387 * 59.99888 * 1 2 3 31 31 H 1.09004 * 109.46630 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46872 * 240.00646 * 2 1 3 33 33 H 1.08998 * 109.47001 * 120.00197 * 2 1 3 34 34 H 1.09001 * 109.46737 * 60.00111 * 3 2 1 35 35 H 1.08998 * 109.47500 * 299.99892 * 3 2 1 36 36 H 1.09005 * 109.46976 * 59.99770 * 7 5 4 37 37 H 1.08995 * 109.47435 * 300.00098 * 7 5 4 38 38 H 1.07997 * 119.61743 * 359.95251 * 9 8 7 39 39 H 1.07997 * 119.61968 * 180.02562 * 11 10 9 40 40 H 1.07992 * 120.41870 * 179.74463 * 12 11 10 41 41 H 1.09002 * 109.47093 * 270.00358 * 14 13 8 42 42 H 1.08997 * 109.46630 * 29.99958 * 14 13 8 43 43 H 1.08990 * 109.46804 * 149.99961 * 14 13 8 44 44 H 1.08995 * 109.46019 * 0.02562 * 15 4 3 45 45 H 1.08999 * 109.49618 * 298.55962 * 16 15 4 46 46 H 1.08988 * 109.49911 * 58.66390 * 16 15 4 47 47 H 1.08999 * 109.60084 * 294.86525 * 17 16 15 48 48 H 1.08997 * 109.70097 * 174.50321 * 17 16 15 49 49 H 0.97000 * 119.99485 * 180.02562 * 22 21 19 50 50 H 1.09004 * 109.58134 * 293.82216 * 27 18 17 51 51 H 1.08999 * 109.70643 * 173.46530 * 27 18 17 52 52 H 1.09003 * 109.49964 * 301.34199 * 28 15 4 53 53 H 1.09001 * 109.49356 * 61.39855 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1793 1.4425 -1.1664 6 8 5.3921 1.4430 -1.1659 7 6 3.4263 1.4428 -2.4717 8 6 4.4060 1.4432 -3.6168 9 6 4.7821 2.6309 -4.2157 10 7 5.6392 2.6392 -5.2177 11 6 6.1693 1.5261 -5.6861 12 6 5.8414 0.3012 -5.1368 13 6 4.9422 0.2526 -4.0822 14 6 4.5581 -1.0633 -3.4560 15 6 4.2370 1.4428 1.2696 16 6 5.1161 2.6928 1.3509 17 6 5.8532 2.7073 2.6938 18 7 6.5868 1.4432 2.8440 19 6 7.9283 1.4434 3.1190 20 1 8.5458 2.2680 2.7950 21 6 8.4943 0.3836 3.8143 22 7 7.7272 -0.4429 4.4930 23 14 10.3449 0.1306 3.7867 24 1 10.9768 1.1880 2.9573 25 1 10.8753 0.2044 5.1717 26 1 10.6538 -1.2019 3.2086 27 6 5.8536 0.1788 2.6939 28 6 5.1162 0.1928 1.3512 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 2.7999 2.3331 -2.5296 37 1 2.7993 0.5531 -2.5298 38 1 4.3688 3.5628 -3.8591 39 1 6.8683 1.5724 -6.5080 40 1 6.2757 -0.6071 -5.5274 41 1 5.2430 -1.2906 -2.6391 42 1 3.5409 -0.9987 -3.0699 43 1 4.6126 -1.8522 -4.2061 44 1 3.5282 1.4424 2.0976 45 1 5.8416 2.6808 0.5376 46 1 4.4918 3.5825 1.2692 47 1 5.1328 2.8103 3.5053 48 1 6.5540 3.5417 2.7193 49 1 8.1229 -1.1832 4.9791 50 1 5.1332 0.0757 3.5054 51 1 6.5532 -0.6568 2.7179 52 1 4.4920 -0.6971 1.2696 53 1 5.8413 0.2044 0.5374 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266386418.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:30 Heat of formation + Delta-G solvation = -7.170911 kcal Electronic energy + Delta-G solvation = -31978.870886 eV Core-core repulsion = 28042.857725 eV Total energy + Delta-G solvation = -3936.013161 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.75326 -40.81197 -38.68188 -37.11434 -35.48961 -34.82698 -33.43642 -33.35710 -31.83261 -31.29994 -29.44355 -28.39828 -27.29220 -26.40162 -24.36962 -23.87981 -23.52795 -22.70246 -22.39736 -21.12624 -19.80871 -18.85387 -17.76386 -17.55171 -17.53181 -17.20207 -16.79940 -16.08191 -15.87463 -15.59084 -15.42137 -15.34525 -15.28924 -14.83400 -14.55833 -14.50456 -14.26440 -14.11828 -13.95127 -13.84347 -13.63779 -13.52649 -13.26485 -13.09494 -12.98487 -12.82399 -12.71500 -12.61713 -12.58244 -12.25215 -12.18875 -12.12598 -11.99261 -11.79735 -11.56881 -11.37405 -11.21570 -10.66588 -10.51157 -10.39725 -10.31032 -9.85619 -9.49748 -8.69771 -7.90927 -5.34878 0.17122 0.33937 1.40450 1.42646 1.53574 1.75843 2.08232 2.47694 2.86215 3.24056 3.50605 3.63631 3.67481 3.72524 3.82393 3.94993 3.96859 4.05795 4.07334 4.10279 4.25791 4.36578 4.43699 4.45470 4.51834 4.53338 4.57033 4.64336 4.67605 4.68113 4.72602 4.79595 4.83437 4.88314 4.89772 4.96869 5.03070 5.04108 5.10008 5.16940 5.18845 5.28823 5.33726 5.43042 5.43911 5.49715 5.53260 5.61591 5.68642 5.82047 5.82569 6.36787 6.60009 7.04687 7.12587 7.37187 7.83945 8.34591 9.15528 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009209 B = 0.003699 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.784554 B = 7567.071017 C = 9332.561645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.101 3.899 4 N -0.606 5.606 5 C 0.509 3.491 6 O -0.567 6.567 7 C -0.090 4.090 8 C -0.126 4.126 9 C 0.097 3.903 10 N -0.518 5.518 11 C 0.084 3.916 12 C -0.180 4.180 13 C -0.040 4.040 14 C -0.116 4.116 15 C 0.172 3.828 16 C -0.132 4.132 17 C 0.147 3.853 18 N -0.609 5.609 19 C -0.263 4.263 20 H 0.056 0.944 21 C -0.046 4.046 22 N -0.931 5.931 23 Si 0.962 3.038 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.289 1.289 27 C 0.185 3.815 28 C -0.134 4.134 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.164 0.836 39 H 0.175 0.825 40 H 0.155 0.845 41 H 0.058 0.942 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.051 0.949 46 H 0.075 0.925 47 H 0.025 0.975 48 H 0.047 0.953 49 H 0.251 0.749 50 H 0.004 0.996 51 H 0.048 0.952 52 H 0.058 0.942 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.031 0.757 -17.951 26.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C -0.021 4.021 4 N -0.338 5.338 5 C 0.298 3.702 6 O -0.445 6.445 7 C -0.129 4.129 8 C -0.128 4.128 9 C -0.060 4.060 10 N -0.227 5.227 11 C -0.072 4.072 12 C -0.199 4.199 13 C -0.048 4.048 14 C -0.172 4.172 15 C 0.068 3.932 16 C -0.171 4.171 17 C 0.021 3.979 18 N -0.333 5.333 19 C -0.393 4.393 20 H 0.074 0.926 21 C -0.242 4.242 22 N -0.577 5.577 23 Si 0.790 3.210 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.216 1.216 27 C 0.059 3.941 28 C -0.174 4.174 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.181 0.819 39 H 0.192 0.808 40 H 0.173 0.827 41 H 0.076 0.924 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.043 0.957 48 H 0.066 0.934 49 H 0.060 0.940 50 H 0.022 0.978 51 H 0.066 0.934 52 H 0.077 0.923 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.120 1.453 -18.234 25.747 hybrid contribution 1.311 -1.148 0.940 1.980 sum -16.809 0.305 -17.294 24.119 Atomic orbital electron populations 1.21674 0.93453 1.02312 1.02827 1.21958 0.97362 0.96633 1.02104 1.22026 0.77072 0.97758 1.05199 1.48274 1.07740 1.72944 1.04827 1.21007 0.87698 0.75574 0.85936 1.90754 1.16163 1.49965 1.87641 1.20733 0.96981 1.07688 0.87536 1.20389 1.00465 0.94005 0.97979 1.22871 0.93391 0.97966 0.91759 1.67657 1.09885 1.32242 1.12941 1.23134 0.97349 0.87751 0.98989 1.22307 0.99289 1.00512 0.97839 1.20489 0.93993 0.96205 0.94108 1.20883 1.02393 0.93019 1.00955 1.20737 0.92882 0.94285 0.85268 1.22214 0.98952 0.97432 0.98549 1.20983 0.94169 0.88305 0.94473 1.44257 1.05618 1.01156 1.82243 1.19465 0.84901 1.06587 1.28384 0.92593 1.25698 1.01720 0.99813 0.96933 1.70165 1.35309 1.18640 1.33574 0.85295 0.80962 0.77492 0.77270 1.19793 1.21131 1.21596 1.20488 0.93053 0.88930 0.91674 1.22304 0.98700 0.97167 0.99187 0.92315 0.90933 0.92536 0.91691 0.93334 0.89284 0.87431 0.84903 0.85420 0.81881 0.80792 0.82695 0.92375 0.89630 0.89056 0.89140 0.93042 0.90605 0.95707 0.93447 0.94032 0.97769 0.93378 0.92304 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.91 71.98 0.71 -0.62 16 2 C -0.14 -1.92 6.26 30.60 0.19 -1.73 16 3 C 0.10 1.43 5.18 86.38 0.45 1.88 16 4 N -0.61 -14.71 2.42 -797.68 -1.93 -16.64 16 5 C 0.51 13.75 7.09 87.66 0.62 14.37 16 6 O -0.57 -22.01 12.28 -3.05 -0.04 -22.05 16 7 C -0.09 -1.55 3.94 29.10 0.11 -1.44 16 8 C -0.13 -2.85 4.39 -19.77 -0.09 -2.94 16 9 C 0.10 2.37 10.84 84.69 0.92 3.29 16 10 N -0.52 -13.93 10.36 -195.84 -2.03 -15.96 16 11 C 0.08 1.90 11.18 84.67 0.95 2.85 16 12 C -0.18 -3.81 9.82 22.36 0.22 -3.59 16 13 C -0.04 -0.90 5.92 -19.66 -0.12 -1.01 16 14 C -0.12 -2.13 9.68 71.24 0.69 -1.44 16 15 C 0.17 5.62 2.51 45.02 0.11 5.73 16 16 C -0.13 -4.87 5.27 30.67 0.16 -4.71 16 17 C 0.15 6.47 6.52 86.36 0.56 7.04 16 18 N -0.61 -32.73 2.99 -699.10 -2.09 -34.82 16 19 C -0.26 -15.59 9.58 84.03 0.81 -14.78 16 20 H 0.06 3.32 7.89 -2.91 -0.02 3.30 16 21 C -0.05 -2.72 4.92 84.86 0.42 -2.30 16 22 N -0.93 -56.76 11.19 21.65 0.24 -56.52 16 23 Si 0.96 47.50 29.59 68.60 2.03 49.53 16 24 H -0.27 -13.16 7.11 99.48 0.71 -12.46 16 25 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 27 C 0.18 9.38 5.30 86.36 0.46 9.84 16 28 C -0.13 -5.47 5.27 30.67 0.16 -5.31 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.06 0.84 7.22 -2.39 -0.02 0.82 16 33 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 1.15 7.92 -2.39 -0.02 1.14 16 35 H 0.11 0.87 6.44 -2.39 -0.02 0.86 16 36 H 0.13 1.43 7.32 -2.38 -0.02 1.42 16 37 H 0.13 1.55 5.34 -2.39 -0.01 1.54 16 38 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 39 H 0.18 2.90 8.06 -2.91 -0.02 2.88 16 40 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 41 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.09 1.23 6.17 -2.39 -0.01 1.22 16 43 H 0.09 1.25 8.10 -2.39 -0.02 1.23 16 44 H 0.09 2.73 7.79 -2.39 -0.02 2.71 16 45 H 0.05 2.27 6.21 -2.39 -0.01 2.25 16 46 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 49 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 50 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 51 H 0.05 2.80 6.07 -2.39 -0.01 2.78 16 52 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 53 H 0.05 2.30 6.21 -2.39 -0.01 2.28 16 Total: -1.00 -79.24 410.09 4.40 -74.83 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.88 Total: 16.50 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 7.34 Total: 5.13 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -5.81 Total: -123.94 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.04 Total: -22.05 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -79.24 4.40 -74.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266386418.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.663 kcal (2) G-P(sol) polarization free energy of solvation -79.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds