Wall clock time and date at job start Wed Apr 1 2020 03:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46655 * 2 1 4 4 C 1.52995 * 109.47213 * 120.00029 * 2 1 3 5 5 H 1.08998 * 109.47447 * 304.88510 * 4 2 1 6 6 C 1.50705 * 109.47100 * 64.88208 * 4 2 1 7 7 O 1.21279 * 120.00007 * 34.44138 * 6 4 2 8 8 N 1.34776 * 120.00124 * 214.43372 * 6 4 2 9 9 C 1.46930 * 120.62988 * 354.39882 * 8 6 4 10 10 C 1.53194 * 108.77753 * 126.40914 * 9 8 6 11 11 C 1.53036 * 109.31248 * 54.63148 * 10 9 8 12 12 C 1.53042 * 109.54098 * 298.63408 * 11 10 9 13 13 H 1.08995 * 109.52389 * 301.40213 * 12 11 10 14 14 C 1.52992 * 109.49959 * 181.31757 * 12 11 10 15 15 N 1.46497 * 109.47299 * 65.16610 * 14 12 11 16 16 C 1.36935 * 120.00501 * 180.02562 * 15 14 12 17 17 H 1.08008 * 119.99720 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00380 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00188 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99773 * 359.97438 * 18 16 15 21 21 H 1.48492 * 109.46907 * 90.00282 * 20 18 16 22 22 H 1.48500 * 109.46957 * 210.00334 * 20 18 16 23 23 H 1.48499 * 109.47161 * 329.99840 * 20 18 16 24 24 C 1.46922 * 120.63105 * 174.40762 * 8 6 4 25 25 C 1.50697 * 109.47169 * 184.88237 * 4 2 1 26 26 C 1.38685 * 120.41701 * 119.72035 * 25 4 2 27 27 C 1.38627 * 118.41393 * 179.78279 * 26 25 4 28 28 C 1.38220 * 119.16608 * 0.51588 * 27 26 25 29 29 N 1.31858 * 120.76527 * 359.72450 * 28 27 26 30 30 C 1.31883 * 121.72156 * 0.02562 * 29 28 27 31 31 H 1.08993 * 109.46832 * 294.98355 * 1 2 3 32 32 H 1.08996 * 109.46976 * 54.98974 * 1 2 3 33 33 H 1.09005 * 109.46815 * 174.98641 * 1 2 3 34 34 H 1.08999 * 109.46860 * 240.00392 * 2 1 3 35 35 H 1.08999 * 109.46337 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.47317 * 299.99658 * 3 2 1 37 37 H 1.08999 * 109.47166 * 60.00580 * 3 2 1 38 38 H 1.09008 * 109.58234 * 246.19326 * 9 8 6 39 39 H 1.08998 * 109.58498 * 6.61471 * 9 8 6 40 40 H 1.09000 * 109.49575 * 174.58250 * 10 9 8 41 41 H 1.08994 * 109.49598 * 294.64799 * 10 9 8 42 42 H 1.09000 * 109.45712 * 178.61694 * 11 10 9 43 43 H 1.09000 * 109.46029 * 58.65677 * 11 10 9 44 44 H 1.09001 * 109.47145 * 185.16186 * 14 12 11 45 45 H 1.08997 * 109.47317 * 305.16307 * 14 12 11 46 46 H 0.97003 * 119.99778 * 359.97438 * 15 14 12 47 47 H 0.96990 * 119.99984 * 179.97438 * 19 18 16 48 48 H 1.09009 * 109.58395 * 113.80589 * 24 8 6 49 49 H 1.09000 * 109.59025 * 353.38275 * 24 8 6 50 50 H 1.07995 * 120.78892 * 0.02602 * 26 25 4 51 51 H 1.08007 * 120.41218 * 180.22219 * 27 26 25 52 52 H 1.08000 * 119.61868 * 179.74459 * 28 27 26 53 53 H 1.08002 * 119.61393 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6071 -0.2605 2.1370 6 6 1.6389 -2.1727 1.1902 7 8 1.5968 -2.7473 0.1230 8 7 1.3271 -2.8323 2.3234 9 6 1.4907 -2.1880 3.6338 10 6 0.1652 -2.2780 4.3965 11 6 -0.2803 -3.7404 4.4663 12 6 -0.5007 -4.2766 3.0500 13 1 -1.2529 -3.6713 2.5443 14 6 -0.9775 -5.7285 3.1220 15 7 -2.2950 -5.7787 3.7607 16 6 -2.9255 -6.9816 3.9362 17 1 -2.4517 -7.8933 3.6033 18 6 -4.1736 -7.0292 4.5419 19 7 -4.7795 -8.1853 4.7110 20 14 -4.9928 -5.4524 5.1183 21 1 -5.8224 -4.8954 4.0198 22 1 -5.8554 -5.7430 6.2916 23 1 -3.9517 -4.4653 5.5018 24 6 0.8173 -4.2092 2.2720 25 6 3.5422 -0.6174 1.3111 26 6 4.1594 0.0016 2.3878 27 6 5.5439 0.0699 2.4045 28 6 6.2576 -0.4676 1.3500 29 7 5.6368 -1.0446 0.3399 30 6 4.3217 -1.1320 0.2929 31 1 -0.3633 0.4340 0.9315 32 1 -0.3633 0.5896 -0.8417 33 1 -0.3633 -1.0238 -0.0898 34 1 1.8934 -0.5138 -0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9564 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 2.2718 -2.6988 4.1970 39 1 1.7622 -1.1415 3.4950 40 1 0.2994 -1.8899 5.4062 41 1 -0.5930 -1.6906 3.8787 42 1 -1.2107 -3.8100 5.0298 43 1 0.4897 -4.3312 4.9626 44 1 -1.0464 -6.1388 2.1145 45 1 -0.2682 -6.3154 3.7056 46 1 -2.7204 -4.9600 4.0601 47 1 -5.6514 -8.2186 5.1345 48 1 1.5435 -4.8848 2.7242 49 1 0.6444 -4.4965 1.2348 50 1 3.5755 0.4169 3.1958 51 1 6.0581 0.5416 3.2290 52 1 7.3363 -0.4147 1.3535 53 1 3.8485 -1.6116 -0.5512 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266813719.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:44 Heat of formation + Delta-G solvation = -22.141988 kcal Electronic energy + Delta-G solvation = -31411.699808 eV Core-core repulsion = 27475.037452 eV Total energy + Delta-G solvation = -3936.662356 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.06680 -40.74022 -39.12607 -37.08418 -36.77215 -34.49192 -33.52976 -33.07062 -32.49158 -32.07711 -29.01503 -27.95395 -27.31729 -26.27925 -24.63204 -24.30300 -23.47936 -23.13309 -21.89726 -20.94815 -19.80710 -19.69350 -18.38870 -18.10171 -17.19800 -17.03241 -16.69672 -16.60347 -15.99798 -15.83732 -15.69000 -15.40136 -15.22312 -15.14377 -14.88553 -14.63617 -14.42689 -13.98342 -13.96162 -13.86823 -13.75712 -13.73539 -13.56374 -13.33084 -13.06926 -12.94938 -12.86003 -12.64291 -12.25400 -12.12974 -12.04165 -11.94997 -11.86682 -11.78105 -11.65629 -11.54957 -11.40907 -10.99945 -10.97665 -10.60691 -10.36947 -9.88159 -9.67915 -9.32382 -8.04729 -5.38975 0.11048 0.35393 1.34709 1.40210 1.47302 1.54603 1.91926 2.46693 2.82891 3.26188 3.42456 3.44594 3.54532 3.63362 3.71303 3.72452 3.86680 3.94227 3.99630 4.06283 4.08714 4.20255 4.20565 4.26891 4.33492 4.39689 4.47822 4.58202 4.63197 4.64142 4.68748 4.76187 4.78189 4.82120 4.84806 4.87458 4.93758 4.96188 4.99005 5.15106 5.18881 5.20024 5.21728 5.26192 5.31440 5.34602 5.41465 5.46080 5.49896 5.72722 5.77905 6.18915 6.38675 7.03460 7.05179 7.11427 7.80180 8.01142 9.16956 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.002518 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.027931 B =11116.427012 C =11454.439289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.136 4.136 4 C -0.050 4.050 5 H 0.132 0.868 6 C 0.519 3.481 7 O -0.578 6.578 8 N -0.606 5.606 9 C 0.101 3.899 10 C -0.128 4.128 11 C -0.113 4.113 12 C -0.095 4.095 13 H 0.064 0.936 14 C 0.161 3.839 15 N -0.753 5.753 16 C -0.238 4.238 17 H 0.053 0.947 18 C -0.066 4.066 19 N -0.985 5.985 20 Si 0.958 3.042 21 H -0.280 1.280 22 H -0.293 1.293 23 H -0.245 1.245 24 C 0.126 3.874 25 C -0.125 4.125 26 C -0.063 4.063 27 C -0.160 4.160 28 C 0.081 3.919 29 N -0.517 5.517 30 C 0.092 3.908 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.030 0.970 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.069 0.931 44 H 0.015 0.985 45 H 0.029 0.971 46 H 0.367 0.633 47 H 0.259 0.741 48 H 0.075 0.925 49 H 0.070 0.930 50 H 0.173 0.827 51 H 0.172 0.828 52 H 0.175 0.825 53 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.942 28.647 -1.042 36.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.096 4.096 3 C -0.193 4.193 4 C -0.071 4.071 5 H 0.150 0.850 6 C 0.308 3.692 7 O -0.457 6.457 8 N -0.338 5.338 9 C -0.020 4.020 10 C -0.166 4.166 11 C -0.151 4.151 12 C -0.115 4.115 13 H 0.082 0.918 14 C 0.034 3.966 15 N -0.399 5.399 16 C -0.369 4.369 17 H 0.071 0.929 18 C -0.257 4.257 19 N -0.635 5.635 20 Si 0.784 3.216 21 H -0.207 1.207 22 H -0.220 1.220 23 H -0.170 1.170 24 C 0.003 3.997 25 C -0.127 4.127 26 C -0.089 4.089 27 C -0.179 4.179 28 C -0.076 4.076 29 N -0.226 5.226 30 C -0.065 4.065 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.132 0.868 40 H 0.122 0.878 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.034 0.966 45 H 0.047 0.953 46 H 0.201 0.799 47 H 0.067 0.933 48 H 0.093 0.907 49 H 0.088 0.912 50 H 0.190 0.810 51 H 0.190 0.810 52 H 0.192 0.808 53 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 22.427 27.765 -2.306 35.766 hybrid contribution -1.579 -0.207 0.516 1.674 sum 20.847 27.559 -1.790 34.602 Atomic orbital electron populations 1.21848 0.94462 1.00954 1.03196 1.20986 0.96073 0.96867 0.95625 1.21773 1.00569 0.93810 1.03187 1.20426 0.92431 0.91244 1.03004 0.85045 1.20966 0.75825 0.89377 0.83015 1.90681 1.54470 1.69998 1.30550 1.48201 1.63812 1.14460 1.07276 1.22141 0.98182 0.99766 0.81917 1.21936 0.96999 0.95524 1.02172 1.21543 1.01686 0.97147 0.94739 1.21521 0.96684 0.95553 0.97714 0.91755 1.20690 0.85758 0.95084 0.95056 1.42629 1.19422 1.04656 1.73220 1.19030 0.99655 0.86552 1.31637 0.92922 1.25567 0.98078 1.00223 1.01816 1.69893 1.16854 1.25969 1.50780 0.85371 0.78697 0.79870 0.77631 1.20670 1.21982 1.16958 1.21360 0.94410 0.83102 1.00848 1.20353 0.94415 1.01169 0.96784 1.21921 0.95375 0.94828 0.96759 1.22517 0.94651 1.00332 1.00426 1.23328 1.01865 0.93009 0.89383 1.67692 1.10999 1.16253 1.27668 1.22542 0.89462 0.96419 0.98054 0.90834 0.91457 0.95090 0.92291 0.93240 0.91958 0.90517 0.89868 0.86803 0.87817 0.91459 0.92845 0.91236 0.96649 0.95285 0.79904 0.93257 0.90653 0.91180 0.80970 0.81050 0.80804 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 8.92 71.98 0.64 -1.83 16 2 C -0.08 -1.24 2.02 -10.79 -0.02 -1.27 16 3 C -0.14 -1.54 8.88 71.98 0.64 -0.90 16 4 C -0.05 -0.75 1.28 -12.29 -0.02 -0.76 16 5 H 0.13 1.14 5.75 -2.39 -0.01 1.12 16 6 C 0.52 12.14 5.49 87.66 0.48 12.62 16 7 O -0.58 -18.70 14.89 -3.03 -0.05 -18.75 16 8 N -0.61 -12.84 2.97 -818.88 -2.43 -15.27 16 9 C 0.10 1.30 6.30 86.36 0.54 1.85 16 10 C -0.13 -1.91 6.08 30.67 0.19 -1.72 16 11 C -0.11 -2.71 5.06 30.62 0.15 -2.55 16 12 C -0.10 -2.76 2.37 -10.72 -0.03 -2.78 16 13 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 14 C 0.16 6.23 5.65 86.38 0.49 6.72 16 15 N -0.75 -35.56 5.12 -343.47 -1.76 -37.32 16 16 C -0.24 -13.87 10.47 84.03 0.88 -12.99 16 17 H 0.05 3.39 8.06 -2.91 -0.02 3.37 16 18 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 19 N -0.98 -63.93 13.97 21.65 0.30 -63.63 16 20 Si 0.96 45.26 27.74 68.60 1.90 47.17 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 23 H -0.25 -10.17 6.52 99.48 0.65 -9.52 16 24 C 0.13 3.35 5.70 86.36 0.49 3.84 16 25 C -0.12 -1.86 3.29 -19.77 -0.07 -1.93 16 26 C -0.06 -0.53 9.71 22.47 0.22 -0.32 16 27 C -0.16 -1.30 10.11 22.36 0.23 -1.07 16 28 C 0.08 1.11 11.18 84.68 0.95 2.05 16 29 N -0.52 -11.10 10.36 -195.85 -2.03 -13.13 16 30 C 0.09 1.96 10.02 84.67 0.85 2.81 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.03 0.70 7.34 -2.38 -0.02 0.68 16 34 H 0.06 1.29 7.13 -2.39 -0.02 1.27 16 35 H 0.05 0.63 7.06 -2.39 -0.02 0.61 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 37 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.11 0.73 5.25 -2.39 -0.01 0.72 16 40 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.05 1.51 7.16 -2.39 -0.02 1.49 16 43 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.37 16.27 4.72 -92.71 -0.44 15.84 16 47 H 0.26 15.92 8.31 -92.72 -0.77 15.15 16 48 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 49 H 0.07 2.20 7.04 -2.39 -0.02 2.19 16 50 H 0.17 0.15 8.00 -2.91 -0.02 0.13 16 51 H 0.17 0.18 8.06 -2.91 -0.02 0.16 16 52 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 53 H 0.13 3.37 7.21 -2.91 -0.02 3.35 16 Total: -1.00 -80.33 410.67 3.42 -76.91 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.39 Total: 25.68 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 7.09 Total: -1.66 kcal Atomic # 7 Polarization: -123.43 SS G_CDS: -5.92 Total: -129.35 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.05 Total: -18.75 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.90 Total: 47.17 kcal Total: -80.33 3.42 -76.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266813719.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.768 kcal (2) G-P(sol) polarization free energy of solvation -80.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds