Wall clock time and date at job start Wed Apr 1 2020 03:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47263 * 2 1 4 4 C 1.53002 * 109.47205 * 174.89759 * 3 2 1 5 5 H 1.09001 * 109.46778 * 305.66769 * 4 3 2 6 6 C 1.50690 * 109.47114 * 65.67184 * 4 3 2 7 7 O 1.21287 * 120.00160 * 30.64594 * 6 4 3 8 8 N 1.34778 * 120.00334 * 210.64324 * 6 4 3 9 9 C 1.46924 * 120.62602 * 354.32601 * 8 6 4 10 10 C 1.53192 * 108.77161 * 233.58296 * 9 8 6 11 11 C 1.53034 * 109.31580 * 305.36506 * 10 9 8 12 12 C 1.53046 * 109.53940 * 61.36509 * 11 10 9 13 13 C 1.46929 * 120.63381 * 174.04139 * 8 6 4 14 14 H 1.08997 * 109.58357 * 246.20276 * 13 8 6 15 15 C 1.52998 * 109.58506 * 6.62877 * 13 8 6 16 16 N 1.46502 * 109.47337 * 292.68674 * 15 13 8 17 17 C 1.36935 * 120.00189 * 186.36344 * 16 15 13 18 18 H 1.08000 * 119.99976 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00004 * 179.97438 * 17 16 15 20 20 N 1.31620 * 120.00039 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99933 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46961 * 0.02562 * 21 19 17 23 23 H 1.48491 * 109.46948 * 120.00662 * 21 19 17 24 24 H 1.48501 * 109.46679 * 240.00516 * 21 19 17 25 25 C 1.50699 * 109.46916 * 185.67117 * 4 3 2 26 26 C 1.38229 * 119.62090 * 274.73063 * 25 4 3 27 27 C 1.38621 * 119.15975 * 179.75653 * 26 25 4 28 28 C 1.38676 * 118.42552 * 0.50439 * 27 26 25 29 29 C 1.38185 * 119.15715 * 359.73448 * 28 27 26 30 30 N 1.31858 * 119.61741 * 95.00094 * 25 4 3 31 31 H 1.09007 * 109.47449 * 59.99269 * 1 2 3 32 32 H 1.08995 * 109.47090 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47302 * 299.99982 * 1 2 3 34 34 H 1.08998 * 109.47434 * 120.00110 * 2 1 3 35 35 H 1.08997 * 109.47242 * 240.00721 * 2 1 3 36 36 H 1.08996 * 109.47468 * 294.89900 * 3 2 1 37 37 H 1.09003 * 109.46457 * 54.89962 * 3 2 1 38 38 H 1.08998 * 109.58910 * 353.36618 * 9 8 6 39 39 H 1.08998 * 109.59093 * 113.65840 * 9 8 6 40 40 H 1.09003 * 109.50058 * 65.32157 * 10 9 8 41 41 H 1.09006 * 109.49979 * 185.41175 * 10 9 8 42 42 H 1.09004 * 109.46258 * 181.38777 * 11 10 9 43 43 H 1.09007 * 109.46183 * 301.35797 * 11 10 9 44 44 H 1.08997 * 109.49640 * 58.58444 * 12 11 10 45 45 H 1.08993 * 109.49987 * 178.65393 * 12 11 10 46 46 H 1.09005 * 109.47102 * 52.68521 * 15 13 8 47 47 H 1.09000 * 109.47322 * 172.68577 * 15 13 8 48 48 H 0.97002 * 119.99633 * 6.37378 * 16 15 13 49 49 H 0.96995 * 119.99808 * 179.97438 * 20 19 17 50 50 H 1.08001 * 120.41306 * 359.97438 * 26 25 4 51 51 H 1.08004 * 120.78905 * 180.25922 * 27 26 25 52 52 H 1.07998 * 120.41998 * 179.74979 * 28 27 26 53 53 H 1.08000 * 119.61348 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5646 1.4444 0.1283 5 1 3.8559 0.8707 1.0081 6 6 4.1730 0.8217 -1.1017 7 8 3.6108 0.9189 -2.1720 8 7 5.3419 0.1566 -1.0125 9 6 6.0966 0.1352 0.2479 10 6 7.5286 0.6047 -0.0270 11 6 8.1377 -0.2524 -1.1389 12 6 7.3196 -0.0839 -2.4214 13 6 5.8825 -0.5660 -2.1720 14 1 5.8835 -1.6366 -1.9673 15 6 5.0216 -0.2770 -3.4034 16 7 3.6951 -0.8720 -3.2224 17 6 2.7914 -0.8560 -4.2511 18 1 3.0566 -0.4051 -5.1960 19 6 1.5348 -1.4203 -4.0798 20 7 1.2117 -1.9703 -2.9285 21 14 0.3022 -1.3991 -5.4834 22 1 0.9060 -0.7277 -6.6623 23 1 -0.0639 -2.7929 -5.8417 24 1 -0.9151 -0.6602 -5.0619 25 6 4.0552 2.8625 0.2683 26 6 4.2843 3.6211 -0.8642 27 6 4.7305 4.9261 -0.7242 28 6 4.9408 5.4181 0.5552 29 6 4.6949 4.5988 1.6405 30 7 4.2660 3.3634 1.4697 31 1 -0.3634 0.5140 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.8933 -0.5137 -0.8900 36 1 1.7533 1.9294 -0.9321 37 1 1.6039 1.9820 0.8408 38 1 5.6247 0.8039 0.9678 39 1 6.1127 -0.8789 0.6471 40 1 7.5156 1.6492 -0.3386 41 1 8.1254 0.5025 0.8794 42 1 9.1652 0.0636 -1.3195 43 1 8.1276 -1.2997 -0.8370 44 1 7.3085 0.9670 -2.7104 45 1 7.7678 -0.6760 -3.2193 46 1 4.9218 0.8008 -3.5321 47 1 5.4949 -0.7061 -4.2865 48 1 3.4570 -1.2772 -2.3739 49 1 0.3335 -2.3642 -2.8088 50 1 4.1143 3.2036 -1.8456 51 1 4.9140 5.5437 -1.5910 52 1 5.2920 6.4288 0.7015 53 1 4.8565 4.9743 2.6401 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266876343.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:13 Heat of formation + Delta-G solvation = 22.320684 kcal Electronic energy + Delta-G solvation = -33388.072747 eV Core-core repulsion = 29453.338437 eV Total energy + Delta-G solvation = -3934.734309 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.99727 -40.74261 -38.39729 -36.77692 -35.84338 -33.98258 -33.55373 -33.38819 -32.89978 -31.43627 -29.97840 -27.64109 -26.17052 -25.55974 -24.48415 -24.26058 -23.68349 -22.48720 -22.10128 -21.32053 -19.76323 -19.05045 -17.97886 -17.74650 -16.95492 -16.80088 -16.57762 -16.26578 -16.06607 -15.77799 -15.45137 -15.24621 -15.10783 -15.00410 -14.74472 -14.45213 -14.25918 -14.21460 -13.98906 -13.79530 -13.59195 -13.42912 -13.13221 -13.06059 -12.83010 -12.76755 -12.65816 -12.45250 -12.12168 -12.10021 -11.99173 -11.83055 -11.73792 -11.69388 -11.46896 -11.35545 -11.30559 -10.81039 -10.77416 -10.40050 -9.99396 -9.66699 -9.39425 -8.47659 -7.72415 -4.89654 0.14725 0.34950 1.45078 1.46810 1.54496 1.97011 2.15536 2.66099 2.82271 3.30946 3.57306 3.62651 3.84103 3.84320 3.92901 3.94653 4.02080 4.08069 4.12526 4.16239 4.23341 4.29322 4.35285 4.37556 4.44894 4.49773 4.56039 4.60771 4.66085 4.73057 4.78991 4.85613 4.87856 4.90886 4.97526 4.99427 5.02205 5.07630 5.10593 5.14357 5.23246 5.23352 5.30396 5.33905 5.35834 5.48151 5.51875 5.61137 5.78841 5.80293 5.89651 6.46899 6.70469 7.02210 7.53851 7.63804 8.31709 8.57552 9.49174 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009723 B = 0.004938 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.147456 B = 5669.041579 C = 7093.641035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.126 4.126 3 C -0.078 4.078 4 C -0.047 4.047 5 H 0.106 0.894 6 C 0.487 3.513 7 O -0.485 6.485 8 N -0.613 5.613 9 C 0.103 3.897 10 C -0.123 4.123 11 C -0.111 4.111 12 C -0.118 4.118 13 C 0.146 3.854 14 H 0.061 0.939 15 C 0.166 3.834 16 N -0.697 5.697 17 C -0.212 4.212 18 H 0.053 0.947 19 C -0.066 4.066 20 N -0.946 5.946 21 Si 0.949 3.051 22 H -0.279 1.279 23 H -0.296 1.296 24 H -0.303 1.303 25 C 0.137 3.863 26 C -0.180 4.180 27 C -0.076 4.076 28 C -0.166 4.166 29 C 0.094 3.906 30 N -0.496 5.496 31 H 0.026 0.974 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.081 0.919 46 H 0.019 0.981 47 H 0.011 0.989 48 H 0.371 0.629 49 H 0.242 0.758 50 H 0.111 0.889 51 H 0.151 0.849 52 H 0.171 0.829 53 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.018 12.357 13.131 23.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.164 4.164 3 C -0.116 4.116 4 C -0.069 4.069 5 H 0.124 0.876 6 C 0.272 3.728 7 O -0.356 6.356 8 N -0.350 5.350 9 C -0.020 4.020 10 C -0.161 4.161 11 C -0.148 4.148 12 C -0.157 4.157 13 C 0.043 3.957 14 H 0.079 0.921 15 C 0.040 3.960 16 N -0.338 5.338 17 C -0.345 4.345 18 H 0.072 0.928 19 C -0.258 4.258 20 N -0.598 5.598 21 Si 0.782 3.218 22 H -0.204 1.204 23 H -0.224 1.224 24 H -0.231 1.231 25 C 0.000 4.000 26 C -0.200 4.200 27 C -0.102 4.102 28 C -0.185 4.185 29 C -0.063 4.063 30 N -0.205 5.205 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.115 0.885 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.100 0.900 46 H 0.037 0.963 47 H 0.029 0.971 48 H 0.203 0.797 49 H 0.051 0.949 50 H 0.129 0.871 51 H 0.169 0.831 52 H 0.189 0.811 53 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 14.495 11.939 13.060 22.874 hybrid contribution -1.288 0.096 -1.673 2.114 sum 13.207 12.035 11.386 21.188 Atomic orbital electron populations 1.21455 0.95860 1.00752 1.00186 1.21523 0.96436 0.95996 1.02419 1.21255 0.91665 0.97706 1.00979 1.20188 0.96562 0.92292 0.97879 0.87595 1.20415 0.80849 0.80935 0.90553 1.91119 1.60948 1.54979 1.28571 1.47964 1.21863 1.52610 1.12549 1.21886 0.92787 1.02229 0.85050 1.21830 0.94739 0.99331 1.00179 1.21482 0.99164 1.00626 0.93554 1.21911 0.92884 1.01431 0.99452 1.21456 0.93857 0.95075 0.85331 0.92091 1.20846 0.85073 0.96136 0.93986 1.42291 1.11020 1.67184 1.13336 1.19329 0.94412 1.28041 0.92717 0.92850 1.25086 0.98754 1.03315 0.98679 1.69732 1.20478 1.45736 1.23842 0.85400 0.79920 0.76422 0.80046 1.20449 1.22386 1.23075 1.20455 0.95761 0.94763 0.89016 1.22069 1.01702 0.96558 0.99697 1.21876 0.94713 0.94063 0.99562 1.22506 1.00866 1.02807 0.92328 1.23358 0.93500 0.88341 1.01102 1.67440 1.12782 1.15686 1.24591 0.95434 0.93769 0.91620 0.92302 0.91298 0.93930 0.90867 0.89873 0.90879 0.92888 0.88509 0.89802 0.91115 0.92438 0.90034 0.96295 0.97139 0.79661 0.94903 0.87138 0.83079 0.81120 0.79375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 9.91 71.98 0.71 -4.11 16 2 C -0.13 -5.08 5.66 30.60 0.17 -4.91 16 3 C -0.08 -2.85 4.39 30.60 0.13 -2.72 16 4 C -0.05 -1.56 1.68 -12.29 -0.02 -1.58 16 5 H 0.11 3.24 6.44 -2.39 -0.02 3.22 16 6 C 0.49 18.47 4.19 87.65 0.37 18.84 16 7 O -0.49 -23.03 8.42 -3.05 -0.03 -23.06 16 8 N -0.61 -19.78 2.97 -794.24 -2.36 -22.14 16 9 C 0.10 2.45 6.14 86.36 0.53 2.98 16 10 C -0.12 -2.28 6.08 30.67 0.19 -2.10 16 11 C -0.11 -2.03 5.88 30.62 0.18 -1.85 16 12 C -0.12 -2.93 5.40 30.82 0.17 -2.76 16 13 C 0.15 4.93 2.97 45.12 0.13 5.06 16 14 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 15 C 0.17 7.30 4.87 86.38 0.42 7.72 16 16 N -0.70 -37.22 3.16 -343.44 -1.09 -38.31 16 17 C -0.21 -12.60 9.72 84.03 0.82 -11.78 16 18 H 0.05 3.19 7.83 -2.91 -0.02 3.17 16 19 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 20 N -0.95 -57.93 12.41 21.65 0.27 -57.66 16 21 Si 0.95 49.40 29.55 68.60 2.03 51.42 16 22 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 23 H -0.30 -15.24 7.11 99.48 0.71 -14.54 16 24 H -0.30 -15.94 7.11 99.48 0.71 -15.24 16 25 C 0.14 4.06 5.43 42.55 0.23 4.29 16 26 C -0.18 -5.36 9.18 22.36 0.21 -5.16 16 27 C -0.08 -1.65 10.18 22.47 0.23 -1.42 16 28 C -0.17 -2.71 10.11 22.36 0.23 -2.49 16 29 C 0.09 1.74 11.18 84.67 0.95 2.69 16 30 N -0.50 -12.74 10.27 -183.88 -1.89 -14.63 16 31 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.07 3.47 6.19 -2.39 -0.01 3.46 16 36 H 0.04 1.82 7.65 -2.39 -0.02 1.80 16 37 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.08 1.99 5.44 -2.39 -0.01 1.97 16 39 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 44 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.02 0.92 6.47 -2.38 -0.02 0.91 16 47 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.37 20.94 6.39 -92.71 -0.59 20.34 16 49 H 0.24 14.60 8.31 -92.71 -0.77 13.83 16 50 H 0.11 4.00 6.51 -2.91 -0.02 3.98 16 51 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 52 H 0.17 1.45 8.06 -2.91 -0.02 1.42 16 53 H 0.19 2.05 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -73.23 405.96 3.34 -69.89 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: 0.30 Total: 37.22 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 6.11 Total: -2.75 kcal Atomic # 7 Polarization: -127.67 SS G_CDS: -5.06 Total: -132.73 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.03 Total: -23.06 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.03 Total: 51.42 kcal Total: -73.23 3.34 -69.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266876343.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.208 kcal (2) G-P(sol) polarization free energy of solvation -73.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds