Wall clock time and date at job start Wed Apr 1 2020 04:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47191 * 2 1 4 4 N 1.46498 * 109.47059 * 120.00426 * 2 1 3 5 5 C 1.36934 * 120.00217 * 302.23533 * 4 2 1 6 6 H 1.07999 * 119.99791 * 321.91934 * 5 4 2 7 7 C 1.38811 * 119.99944 * 141.91332 * 5 4 2 8 8 N 1.31611 * 120.00224 * 338.46245 * 7 5 4 9 9 Si 1.86801 * 119.99794 * 158.45814 * 7 5 4 10 10 H 1.48502 * 109.46951 * 89.99895 * 9 7 5 11 11 H 1.48500 * 109.47173 * 210.00320 * 9 7 5 12 12 H 1.48501 * 109.47166 * 330.00295 * 9 7 5 13 13 C 1.46506 * 119.99850 * 122.24023 * 4 2 1 14 14 C 1.53002 * 109.47020 * 89.99566 * 13 4 2 15 15 C 1.53002 * 109.46862 * 179.97438 * 14 13 4 16 16 N 1.46497 * 109.47084 * 180.02562 * 15 14 13 17 17 C 1.34774 * 120.00023 * 180.02562 * 16 15 14 18 18 O 1.21280 * 120.00221 * 359.97438 * 17 16 15 19 19 C 1.50704 * 120.00223 * 180.02562 * 17 16 15 20 20 H 1.09001 * 109.22090 * 60.53420 * 19 17 16 21 21 C 1.52718 * 109.25773 * 179.97438 * 19 17 16 22 22 C 1.53324 * 108.43570 * 171.57269 * 21 19 17 23 23 C 1.52766 * 108.36110 * 290.14001 * 22 21 19 24 24 C 1.50499 * 110.55658 * 50.83460 * 23 22 21 25 25 C 1.39175 * 117.97343 * 162.70886 * 24 23 22 26 26 C 1.38411 * 118.86916 * 179.97438 * 25 24 23 27 27 C 1.38241 * 118.83945 * 359.36071 * 26 25 24 28 28 N 1.31510 * 120.61257 * 0.65077 * 27 26 25 29 29 C 1.32706 * 122.39672 * 359.78787 * 28 27 26 30 30 H 1.09008 * 109.47204 * 305.40147 * 1 2 3 31 31 H 1.09001 * 109.47290 * 65.39523 * 1 2 3 32 32 H 1.08999 * 109.47256 * 185.40246 * 1 2 3 33 33 H 1.08999 * 109.46586 * 240.00410 * 2 1 3 34 34 H 1.09003 * 109.47431 * 180.44062 * 3 2 1 35 35 H 1.08998 * 109.47341 * 300.44447 * 3 2 1 36 36 H 1.09003 * 109.47111 * 60.44210 * 3 2 1 37 37 H 0.96998 * 120.00326 * 180.02562 * 8 7 5 38 38 H 1.08997 * 109.46909 * 329.99393 * 13 4 2 39 39 H 1.08999 * 109.46586 * 209.99667 * 13 4 2 40 40 H 1.09005 * 109.47095 * 60.00274 * 14 13 4 41 41 H 1.08991 * 109.47473 * 299.99900 * 14 13 4 42 42 H 1.08997 * 109.46865 * 59.99951 * 15 14 13 43 43 H 1.09005 * 109.47189 * 300.00113 * 15 14 13 44 44 H 0.97004 * 120.00312 * 359.97438 * 16 15 14 45 45 H 1.08997 * 109.64349 * 51.88904 * 21 19 17 46 46 H 1.08997 * 109.64172 * 291.25554 * 21 19 17 47 47 H 1.08999 * 109.68692 * 170.42240 * 22 21 19 48 48 H 1.08999 * 109.68410 * 49.86219 * 22 21 19 49 49 H 1.08994 * 109.26050 * 290.55782 * 23 22 21 50 50 H 1.08995 * 109.26195 * 171.11060 * 23 22 21 51 51 H 1.08007 * 120.56793 * 359.72037 * 25 24 23 52 52 H 1.08001 * 120.58177 * 179.60250 * 26 25 24 53 53 H 1.08001 * 119.69584 * 180.35586 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6501 -0.2503 2.4393 6 1 1.5674 0.8087 2.6344 7 6 1.3832 -1.1650 3.4488 8 7 1.0661 -2.4058 3.1455 9 14 1.4744 -0.6348 5.2376 10 1 0.1446 -0.1392 5.6753 11 1 1.8721 -1.7930 6.0776 12 1 2.4787 0.4495 5.3820 13 6 2.9006 -1.8526 1.0621 14 6 4.3581 -1.3872 1.0480 15 6 5.2795 -2.6007 0.9087 16 7 6.6750 -2.1552 0.8958 17 6 7.6694 -3.0576 0.7803 18 8 7.4090 -4.2385 0.6875 19 6 9.1051 -2.5995 0.7676 20 1 9.3268 -2.0881 1.7043 21 6 10.0202 -3.8141 0.6283 22 6 11.4537 -3.3181 0.4049 23 6 11.5352 -2.6930 -0.9866 24 6 10.4319 -1.6879 -1.1799 25 6 10.5597 -0.7697 -2.2180 26 6 9.5556 0.1627 -2.4128 27 6 8.4542 0.1410 -1.5777 28 7 8.3673 -0.7417 -0.6067 29 6 9.3120 -1.6461 -0.3813 30 1 -0.3634 0.5954 0.8377 31 1 -0.3634 0.4279 -0.9344 32 1 -0.3634 -1.0231 0.0968 33 1 1.8932 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0079 35 1 1.6702 1.9586 -0.8859 36 1 1.6831 1.9540 0.8939 37 1 0.8792 -3.0449 3.8509 38 1 2.6764 -2.3735 0.1313 39 1 2.7427 -2.5275 1.9034 40 1 4.5822 -0.8662 1.9789 41 1 4.5159 -0.7123 0.2069 42 1 5.0555 -3.1220 -0.0219 43 1 5.1216 -3.2753 1.7502 44 1 6.8834 -1.2107 0.9697 45 1 9.7036 -4.4156 -0.2237 46 1 9.9770 -4.4117 1.5389 47 1 12.1470 -4.1565 0.4720 48 1 11.7055 -2.5717 1.1582 49 1 11.4434 -3.4766 -1.7387 50 1 12.4984 -2.1961 -1.1017 51 1 11.4296 -0.7819 -2.8581 52 1 9.6293 0.8921 -3.2059 53 1 7.6598 0.8585 -1.7209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267505624.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:49 Heat of formation + Delta-G solvation = -20.504026 kcal Electronic energy + Delta-G solvation = -30819.958689 eV Core-core repulsion = 26883.367361 eV Total energy + Delta-G solvation = -3936.591328 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.99479 -40.33841 -38.52721 -37.41755 -36.23121 -34.52793 -34.22469 -33.00764 -31.41614 -31.09598 -30.26304 -27.73510 -27.21598 -25.73799 -24.79893 -24.21481 -23.66657 -22.33209 -21.49344 -21.27579 -20.62154 -18.27733 -18.17885 -17.66888 -17.49942 -16.96483 -16.74566 -16.53454 -16.27185 -15.84714 -15.60910 -15.19399 -15.05027 -14.88134 -14.55767 -14.49249 -14.44861 -14.08131 -13.83687 -13.68094 -13.36749 -13.26873 -13.21380 -13.15268 -12.90331 -12.82918 -12.69656 -12.47456 -12.35128 -12.16913 -12.08707 -11.91476 -11.85913 -11.71030 -11.51121 -11.32405 -11.25889 -11.01218 -10.57302 -10.45610 -10.34332 -9.98245 -9.70055 -8.47498 -7.75977 -5.37427 0.12679 0.34373 1.44347 1.48249 1.56077 1.60691 2.26584 2.53993 2.82843 3.16546 3.30556 3.48564 3.62204 3.80280 3.85174 3.88292 4.10993 4.15923 4.16393 4.24127 4.32088 4.36110 4.38637 4.43077 4.53404 4.55485 4.63915 4.68073 4.72724 4.80249 4.84389 4.89888 4.96769 4.97406 4.99328 5.09344 5.12108 5.15819 5.19440 5.20931 5.23065 5.27974 5.38208 5.40150 5.47658 5.54656 5.62375 5.69194 5.75950 5.78741 5.88428 6.54575 6.65104 7.00006 7.24514 7.30488 7.95023 8.48448 9.19763 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013046 B = 0.002703 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.745423 B =10357.974380 C =11579.780653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.152 3.848 3 C -0.141 4.141 4 N -0.593 5.593 5 C -0.246 4.246 6 H 0.056 0.944 7 C -0.037 4.037 8 N -0.917 5.917 9 Si 0.946 3.054 10 H -0.286 1.286 11 H -0.296 1.296 12 H -0.271 1.271 13 C 0.154 3.846 14 C -0.116 4.116 15 C 0.133 3.867 16 N -0.699 5.699 17 C 0.515 3.485 18 O -0.591 6.591 19 C -0.050 4.050 20 H 0.124 0.876 21 C -0.098 4.098 22 C -0.114 4.114 23 C -0.077 4.077 24 C -0.123 4.123 25 C -0.079 4.079 26 C -0.165 4.165 27 C 0.087 3.913 28 N -0.513 5.513 29 C 0.110 3.890 30 H 0.036 0.964 31 H 0.065 0.935 32 H 0.022 0.978 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.067 0.933 36 H 0.037 0.963 37 H 0.247 0.753 38 H 0.023 0.977 39 H 0.059 0.941 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.050 0.950 43 H 0.043 0.957 44 H 0.416 0.584 45 H 0.058 0.942 46 H 0.076 0.924 47 H 0.095 0.905 48 H 0.075 0.925 49 H 0.085 0.915 50 H 0.104 0.896 51 H 0.166 0.834 52 H 0.165 0.835 53 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.781 5.188 -12.201 28.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.046 3.954 3 C -0.200 4.200 4 N -0.314 5.314 5 C -0.377 4.377 6 H 0.073 0.927 7 C -0.234 4.234 8 N -0.562 5.562 9 Si 0.775 3.225 10 H -0.213 1.213 11 H -0.223 1.223 12 H -0.196 1.196 13 C 0.027 3.973 14 C -0.156 4.156 15 C 0.008 3.992 16 N -0.351 5.351 17 C 0.301 3.699 18 O -0.472 6.472 19 C -0.071 4.071 20 H 0.142 0.858 21 C -0.137 4.137 22 C -0.151 4.151 23 C -0.115 4.115 24 C -0.125 4.125 25 C -0.105 4.105 26 C -0.185 4.185 27 C -0.072 4.072 28 N -0.222 5.222 29 C -0.025 4.025 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.041 0.959 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.255 0.745 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.113 0.887 48 H 0.094 0.906 49 H 0.103 0.897 50 H 0.122 0.878 51 H 0.184 0.816 52 H 0.182 0.818 53 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 23.776 4.264 -11.630 26.809 hybrid contribution -0.077 0.302 0.775 0.835 sum 23.699 4.566 -10.855 26.464 Atomic orbital electron populations 1.21967 0.97771 0.99678 1.00116 1.20655 0.92596 0.93167 0.88941 1.22018 1.00256 0.96985 1.00701 1.44056 1.52410 1.33434 1.01479 1.19021 1.39843 0.91025 0.87811 0.92692 1.25779 0.99292 0.96570 1.01755 1.70133 1.48887 1.05091 1.32072 0.85619 0.77886 0.77127 0.81877 1.21252 1.22302 1.19618 1.20648 0.87128 0.90265 0.99226 1.22070 0.96245 0.96116 1.01177 1.21101 0.80722 0.97223 1.00123 1.46149 1.05309 1.11496 1.72187 1.20890 0.88378 0.85416 0.75171 1.90654 1.85486 1.18730 1.52367 1.20219 0.91362 0.97011 0.98540 0.85844 1.21405 0.94641 0.94528 1.03095 1.21597 0.94874 1.01658 0.96954 1.20544 0.96208 0.96468 0.98245 1.20706 0.96752 0.98947 0.96055 1.22002 0.99833 0.92766 0.95853 1.22480 0.94425 1.00430 1.01141 1.23041 0.98184 0.95475 0.90469 1.67245 1.29329 1.04686 1.20981 1.20580 0.91251 0.94444 0.96243 0.94490 0.91612 0.95854 0.92645 0.93524 0.91455 0.94374 0.94332 0.95858 0.92321 0.93127 0.91822 0.93144 0.93881 0.74507 0.92322 0.90578 0.88666 0.90588 0.89717 0.87788 0.81621 0.81759 0.81347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.51 9.03 71.98 0.65 -4.86 16 2 C 0.15 6.22 3.36 44.99 0.15 6.37 16 3 C -0.14 -4.90 9.20 71.98 0.66 -4.23 16 4 N -0.59 -28.83 2.36 -678.04 -1.60 -30.43 16 5 C -0.25 -13.19 8.23 84.03 0.69 -12.50 16 6 H 0.06 2.95 6.95 -2.91 -0.02 2.93 16 7 C -0.04 -2.05 4.94 84.86 0.42 -1.63 16 8 N -0.92 -54.28 11.52 21.65 0.25 -54.03 16 9 Si 0.95 45.12 29.61 68.60 2.03 47.15 16 10 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 11 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 C 0.15 7.30 5.27 86.38 0.46 7.75 16 14 C -0.12 -4.57 5.65 30.60 0.17 -4.40 16 15 C 0.13 5.05 5.67 86.38 0.49 5.54 16 16 N -0.70 -23.08 4.96 -463.06 -2.30 -25.37 16 17 C 0.51 17.02 7.06 87.66 0.62 17.64 16 18 O -0.59 -23.96 15.83 -3.03 -0.05 -24.01 16 19 C -0.05 -1.18 2.71 -12.37 -0.03 -1.21 16 20 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 21 C -0.10 -1.96 4.64 30.61 0.14 -1.82 16 22 C -0.11 -1.34 5.98 30.63 0.18 -1.16 16 23 C -0.08 -0.83 5.68 29.71 0.17 -0.66 16 24 C -0.12 -2.01 5.74 -19.85 -0.11 -2.12 16 25 C -0.08 -0.98 9.75 22.54 0.22 -0.76 16 26 C -0.17 -2.17 10.12 22.31 0.23 -1.94 16 27 C 0.09 1.62 11.19 84.74 0.95 2.57 16 28 N -0.51 -12.23 7.54 -184.00 -1.39 -13.62 16 29 C 0.11 2.44 6.20 42.29 0.26 2.70 16 30 H 0.04 1.58 7.80 -2.38 -0.02 1.56 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 2.13 7.78 -2.39 -0.02 2.11 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.04 1.43 7.06 -2.39 -0.02 1.41 16 37 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 38 H 0.02 1.07 7.90 -2.39 -0.02 1.05 16 39 H 0.06 3.24 5.56 -2.39 -0.01 3.22 16 40 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 41 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 44 H 0.42 12.51 6.80 -92.71 -0.63 11.88 16 45 H 0.06 1.39 7.79 -2.39 -0.02 1.38 16 46 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.08 0.81 8.10 -2.39 -0.02 0.79 16 49 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.10 0.61 8.13 -2.39 -0.02 0.59 16 51 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 52 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 53 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -71.32 417.63 3.52 -67.81 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 0.25 Total: 27.24 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 6.32 Total: 5.27 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -5.03 Total: -123.46 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -71.32 3.52 -67.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267505624.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.301 kcal (2) G-P(sol) polarization free energy of solvation -71.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds