Wall clock time and date at job start Wed Apr 1 2020 04:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47000 * 2 1 4 4 N 1.46496 * 109.47150 * 119.99786 * 2 1 3 5 5 C 1.36936 * 120.00121 * 296.38388 * 4 2 1 6 6 H 1.07998 * 120.00392 * 38.70410 * 5 4 2 7 7 C 1.38809 * 119.99851 * 218.70182 * 5 4 2 8 8 N 1.31620 * 120.00083 * 17.10749 * 7 5 4 9 9 Si 1.86809 * 120.00080 * 197.10386 * 7 5 4 10 10 H 1.48501 * 109.46762 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46994 * 120.00003 * 9 7 5 12 12 H 1.48497 * 109.47283 * 240.00226 * 9 7 5 13 13 C 1.46500 * 119.99711 * 116.38135 * 4 2 1 14 14 C 1.52997 * 109.47153 * 270.00012 * 13 4 2 15 15 C 1.53000 * 109.47284 * 180.02562 * 14 13 4 16 16 N 1.46497 * 109.47487 * 179.97438 * 15 14 13 17 17 C 1.34773 * 120.00247 * 179.97438 * 16 15 14 18 18 O 1.21284 * 120.00142 * 0.02562 * 17 16 15 19 19 C 1.50704 * 120.00099 * 179.97438 * 17 16 15 20 20 N 1.46903 * 109.47182 * 179.21776 * 19 17 16 21 21 C 1.47902 * 110.99835 * 75.45574 * 20 19 17 22 22 C 1.54598 * 102.62889 * 94.66039 * 21 20 19 23 23 C 1.51578 * 102.81666 * 25.60698 * 22 21 20 24 24 C 1.37918 * 131.57333 * 163.77206 * 23 22 21 25 25 C 1.38301 * 120.08430 * 180.32728 * 24 23 22 26 26 C 1.38308 * 119.87864 * 359.97438 * 25 24 23 27 27 C 1.37904 * 120.26622 * 359.87533 * 26 25 24 28 28 C 1.38960 * 107.94456 * 343.80847 * 23 22 21 29 29 H 1.08995 * 109.47425 * 305.29491 * 1 2 3 30 30 H 1.09005 * 109.47401 * 65.29208 * 1 2 3 31 31 H 1.09004 * 109.47057 * 185.28648 * 1 2 3 32 32 H 1.09000 * 109.47400 * 240.00368 * 2 1 3 33 33 H 1.08994 * 109.47570 * 184.02141 * 3 2 1 34 34 H 1.09003 * 109.46873 * 304.02939 * 3 2 1 35 35 H 1.09006 * 109.46739 * 64.01901 * 3 2 1 36 36 H 0.97006 * 119.99719 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.47027 * 150.00001 * 13 4 2 38 38 H 1.08994 * 109.47018 * 30.00379 * 13 4 2 39 39 H 1.09003 * 109.47163 * 60.00072 * 14 13 4 40 40 H 1.09003 * 109.47231 * 300.00088 * 14 13 4 41 41 H 1.09003 * 109.47118 * 59.99853 * 15 14 13 42 42 H 1.09003 * 109.46902 * 300.00097 * 15 14 13 43 43 H 0.97005 * 119.99828 * 359.97438 * 16 15 14 44 44 H 1.09005 * 109.46858 * 59.22183 * 19 17 16 45 45 H 1.08999 * 109.47577 * 299.22186 * 19 17 16 46 46 H 1.09000 * 110.77801 * 212.94691 * 21 20 19 47 47 H 1.09002 * 110.77517 * 336.18770 * 21 20 19 48 48 H 1.08994 * 110.74703 * 143.93995 * 22 21 20 49 49 H 1.09006 * 110.74639 * 267.27915 * 22 21 20 50 50 H 1.08003 * 119.95727 * 0.28980 * 24 23 22 51 51 H 1.08000 * 120.05843 * 179.97438 * 25 24 23 52 52 H 1.08003 * 119.86085 * 179.89946 * 26 25 24 53 53 H 1.08008 * 119.89991 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7497 -0.1811 2.4385 6 1 0.7862 0.2615 2.6440 7 6 2.7158 -0.2335 3.4339 8 7 3.9749 -0.4513 3.1181 9 14 2.2289 0.0050 5.2216 10 1 0.7640 0.2319 5.3095 11 1 2.5890 -1.2081 5.9987 12 1 2.9466 1.1802 5.7775 13 6 2.7940 -1.9262 1.0632 14 6 1.8457 -3.1268 1.0695 15 6 2.6558 -4.4174 0.9312 16 7 1.7479 -5.5671 0.9379 17 6 2.2414 -6.8162 0.8267 18 8 3.4373 -6.9886 0.7216 19 6 1.3074 -7.9989 0.8341 20 7 2.0836 -9.2368 0.6818 21 6 2.7776 -9.5855 1.9405 22 6 1.7891 -10.5672 2.6107 23 6 1.0292 -11.1378 1.4298 24 6 0.2283 -12.2542 1.3098 25 6 -0.3543 -12.5620 0.0938 26 6 -0.1329 -11.7477 -1.0020 27 6 0.6645 -10.6286 -0.8866 28 6 1.2535 -10.3103 0.3362 29 1 -0.3634 0.5937 0.8387 30 1 -0.3634 0.4296 -0.9336 31 1 -0.3633 -1.0233 0.0947 32 1 1.8934 -0.5138 -0.8900 33 1 3.1275 1.4435 -0.0721 34 1 1.6188 1.9768 -0.8517 35 1 1.7366 1.9351 0.9239 36 1 4.6499 -0.4883 3.8138 37 1 3.4909 -2.0093 1.8972 38 1 3.3498 -1.9071 0.1258 39 1 1.1488 -3.0438 0.2354 40 1 1.2898 -3.1459 2.0069 41 1 3.3524 -4.5002 1.7655 42 1 3.2120 -4.3986 -0.0060 43 1 0.7914 -5.4292 1.0223 44 1 0.6010 -7.9092 0.0088 45 1 0.7623 -8.0256 1.7776 46 1 3.7293 -10.0753 1.7345 47 1 2.9261 -8.6998 2.5583 48 1 2.3259 -11.3539 3.1408 49 1 1.1151 -10.0372 3.2838 50 1 0.0565 -12.8892 2.1663 51 1 -0.9811 -13.4365 0.0002 52 1 -0.5868 -11.9892 -1.9519 53 1 0.8331 -9.9966 -1.7461 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267514289.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:59 Heat of formation + Delta-G solvation = 2.418084 kcal Electronic energy + Delta-G solvation = -29785.996465 eV Core-core repulsion = 25850.399114 eV Total energy + Delta-G solvation = -3935.597351 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.96201 -40.40815 -38.50702 -37.61949 -36.26451 -34.27943 -33.56958 -33.05758 -31.22840 -30.39314 -29.84897 -28.08470 -27.71914 -26.66922 -24.67621 -24.01081 -22.38206 -22.30059 -22.12528 -21.32412 -21.09187 -18.25492 -18.07610 -17.82785 -17.27260 -16.97611 -16.70945 -16.50636 -16.19149 -16.08865 -15.71221 -15.68050 -15.09861 -14.79581 -14.61309 -14.50292 -14.37243 -14.05848 -13.89947 -13.58457 -13.39658 -13.26096 -13.23700 -13.12109 -12.96176 -12.85082 -12.69791 -12.48929 -12.45019 -12.31091 -12.19922 -12.10257 -11.89201 -11.79428 -11.69748 -11.30626 -11.23799 -11.07921 -10.48454 -10.36789 -10.08398 -9.73515 -8.88778 -8.45083 -7.72940 -5.39821 0.34118 0.45334 1.44337 1.48627 1.56739 1.61427 2.01565 2.53256 2.70965 2.81536 3.32810 3.58185 3.63993 3.72821 3.79362 3.95438 4.09964 4.13864 4.21200 4.23051 4.28663 4.34297 4.37055 4.52024 4.53042 4.54995 4.65027 4.67813 4.72472 4.75408 4.82637 4.89637 4.96424 4.98119 5.00573 5.12788 5.14923 5.17153 5.21572 5.24204 5.39422 5.46174 5.50053 5.51943 5.60977 5.64453 5.69256 5.76337 5.78498 5.84456 5.95110 6.27962 6.56771 6.58692 7.25520 7.27010 7.96071 8.48382 9.20998 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.015331 B = 0.002001 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.880460 B =13988.852441 C =14883.737556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.151 3.849 3 C -0.138 4.138 4 N -0.593 5.593 5 C -0.240 4.240 6 H 0.056 0.944 7 C -0.040 4.040 8 N -0.921 5.921 9 Si 0.949 3.051 10 H -0.266 1.266 11 H -0.293 1.293 12 H -0.296 1.296 13 C 0.147 3.853 14 C -0.120 4.120 15 C 0.137 3.863 16 N -0.716 5.716 17 C 0.507 3.493 18 O -0.569 6.569 19 C 0.049 3.951 20 N -0.495 5.495 21 C 0.056 3.944 22 C -0.105 4.105 23 C -0.150 4.150 24 C -0.096 4.096 25 C -0.131 4.131 26 C -0.106 4.106 27 C -0.124 4.124 28 C 0.067 3.933 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.023 0.977 34 H 0.065 0.935 35 H 0.036 0.964 36 H 0.247 0.753 37 H 0.065 0.935 38 H 0.022 0.978 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.041 0.959 42 H 0.056 0.944 43 H 0.414 0.586 44 H 0.123 0.877 45 H 0.092 0.908 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.101 0.899 49 H 0.090 0.910 50 H 0.139 0.861 51 H 0.151 0.849 52 H 0.150 0.850 53 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.265 -22.650 -6.229 26.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.046 3.954 3 C -0.197 4.197 4 N -0.314 5.314 5 C -0.371 4.371 6 H 0.074 0.926 7 C -0.237 4.237 8 N -0.566 5.566 9 Si 0.778 3.222 10 H -0.191 1.191 11 H -0.220 1.220 12 H -0.224 1.224 13 C 0.020 3.980 14 C -0.160 4.160 15 C 0.012 3.988 16 N -0.369 5.369 17 C 0.294 3.706 18 O -0.448 6.448 19 C -0.080 4.080 20 N -0.213 5.213 21 C -0.070 4.070 22 C -0.143 4.143 23 C -0.152 4.152 24 C -0.114 4.114 25 C -0.150 4.150 26 C -0.124 4.124 27 C -0.144 4.144 28 C -0.028 4.028 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.041 0.959 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.251 0.749 44 H 0.141 0.859 45 H 0.110 0.890 46 H 0.099 0.901 47 H 0.094 0.906 48 H 0.119 0.881 49 H 0.108 0.892 50 H 0.157 0.843 51 H 0.168 0.832 52 H 0.168 0.832 53 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.871 -22.572 -6.609 25.911 hybrid contribution -0.284 0.531 1.749 1.850 sum -11.155 -22.042 -4.860 25.177 Atomic orbital electron populations 1.22039 0.96487 1.00873 1.00623 1.20667 0.93695 0.92046 0.89038 1.21971 0.99185 0.98218 1.00353 1.44070 1.62961 1.22973 1.01425 1.19088 0.95497 1.34182 0.88305 0.92622 1.25845 0.94691 1.01230 1.01925 1.70065 1.00327 1.54050 1.32131 0.85493 0.78121 0.76639 0.81928 1.19079 1.22020 1.22373 1.20756 0.93365 0.84347 0.99545 1.22112 0.99199 0.93216 1.01467 1.21081 0.92499 0.84717 1.00502 1.45959 1.11598 1.05188 1.74162 1.21001 0.89309 0.84715 0.75620 1.90699 1.17904 1.86073 1.50087 1.22056 0.94147 0.86699 1.05100 1.59621 1.26504 1.01677 1.33458 1.23078 0.97514 0.98729 0.87711 1.21707 0.97396 0.99201 0.95986 1.21222 1.00252 0.98461 0.95303 1.20716 0.96159 0.95563 0.98992 1.21439 1.00514 1.00699 0.92310 1.21255 0.97359 0.93607 1.00162 1.20744 0.99205 0.99172 0.95296 1.19722 0.94921 0.93179 0.94989 0.94441 0.91554 0.93363 0.92519 0.95768 0.91626 0.94484 0.94363 0.91728 0.95915 0.91435 0.92817 0.94015 0.92612 0.74950 0.85876 0.89019 0.90068 0.90613 0.88110 0.89156 0.84305 0.83163 0.83244 0.85674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 9.13 71.98 0.66 -4.02 16 2 C 0.15 5.93 3.37 44.99 0.15 6.08 16 3 C -0.14 -5.42 9.18 71.98 0.66 -4.76 16 4 N -0.59 -27.63 2.36 -678.05 -1.60 -29.23 16 5 C -0.24 -12.39 8.04 84.03 0.68 -11.71 16 6 H 0.06 2.89 7.12 -2.91 -0.02 2.87 16 7 C -0.04 -2.18 5.05 84.86 0.43 -1.75 16 8 N -0.92 -53.09 11.28 21.65 0.24 -52.85 16 9 Si 0.95 43.95 29.59 68.60 2.03 45.98 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 11 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 12 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 13 C 0.15 6.58 5.26 86.38 0.45 7.03 16 14 C -0.12 -4.23 5.65 30.59 0.17 -4.05 16 15 C 0.14 4.53 5.67 86.38 0.49 5.02 16 16 N -0.72 -18.72 5.56 -463.06 -2.57 -21.30 16 17 C 0.51 14.30 7.39 87.66 0.65 14.95 16 18 O -0.57 -21.43 15.64 -3.04 -0.05 -21.48 16 19 C 0.05 1.00 5.23 85.56 0.45 1.45 16 20 N -0.50 -11.79 4.64 -692.96 -3.21 -15.00 16 21 C 0.06 1.25 6.25 86.65 0.54 1.79 16 22 C -0.10 -1.71 6.92 30.67 0.21 -1.50 16 23 C -0.15 -2.70 6.23 -19.49 -0.12 -2.82 16 24 C -0.10 -1.36 10.03 22.21 0.22 -1.14 16 25 C -0.13 -1.59 10.06 22.30 0.22 -1.37 16 26 C -0.11 -1.40 10.02 22.21 0.22 -1.18 16 27 C -0.12 -2.22 10.05 22.47 0.23 -1.99 16 28 C 0.07 1.40 5.50 38.28 0.21 1.61 16 29 H 0.04 1.33 7.35 -2.39 -0.02 1.31 16 30 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 2.08 7.77 -2.39 -0.02 2.06 16 33 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.04 1.58 7.44 -2.38 -0.02 1.56 16 36 H 0.25 13.97 8.31 -92.70 -0.77 13.20 16 37 H 0.06 3.43 5.42 -2.39 -0.01 3.42 16 38 H 0.02 0.99 7.89 -2.39 -0.02 0.97 16 39 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.41 8.13 8.47 -92.70 -0.79 7.35 16 44 H 0.12 2.04 7.96 -2.38 -0.02 2.03 16 45 H 0.09 1.53 7.95 -2.39 -0.02 1.51 16 46 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 47 H 0.08 1.81 7.15 -2.39 -0.02 1.79 16 48 H 0.10 1.34 8.14 -2.39 -0.02 1.33 16 49 H 0.09 1.29 8.14 -2.38 -0.02 1.28 16 50 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 51 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 52 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 53 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -68.86 424.07 1.46 -67.39 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.10 Total: 24.84 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 6.53 Total: 1.65 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -7.14 Total: -118.38 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.05 Total: -21.48 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -68.86 1.46 -67.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267514289.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.813 kcal (2) G-P(sol) polarization free energy of solvation -68.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds