Wall clock time and date at job start Wed Apr 1 2020 04:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53007 * 109.47195 * 2 1 4 4 N 1.46896 * 109.47246 * 180.02562 * 3 2 1 5 5 C 1.47446 * 110.99936 * 69.16046 * 4 3 2 6 6 C 1.54317 * 107.23319 * 123.25660 * 5 4 3 7 7 C 1.55258 * 103.08755 * 22.20446 * 6 5 4 8 8 C 1.47847 * 110.99995 * 190.00158 * 4 3 2 9 9 H 1.09003 * 110.37064 * 332.57711 * 8 4 3 10 10 C 1.50695 * 110.37421 * 94.81040 * 8 4 3 11 11 O 1.21284 * 119.99914 * 358.44735 * 10 8 4 12 12 N 1.34774 * 120.00283 * 178.44947 * 10 8 4 13 13 C 1.46498 * 120.00185 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.47174 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.47218 * 295.00310 * 14 13 12 16 16 N 1.46501 * 109.46869 * 55.00384 * 14 13 12 17 17 C 1.36935 * 119.99801 * 205.00058 * 16 14 13 18 18 H 1.08003 * 120.00239 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99745 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00372 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99955 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46845 * 269.99982 * 21 19 17 23 23 H 1.48503 * 109.47399 * 29.99472 * 21 19 17 24 24 H 1.48498 * 109.47295 * 150.00079 * 21 19 17 25 25 C 1.50698 * 109.47046 * 175.00111 * 14 13 12 26 26 C 1.38236 * 119.99950 * 279.73056 * 25 14 13 27 27 C 1.38241 * 119.99868 * 179.77155 * 26 25 14 28 28 C 1.38239 * 119.99721 * 0.49661 * 27 26 25 29 29 C 1.38232 * 119.99997 * 359.75737 * 28 27 26 30 30 C 1.38231 * 120.00066 * 359.97438 * 29 28 27 31 31 H 1.08995 * 109.47585 * 59.99714 * 1 2 3 32 32 H 1.08998 * 109.47451 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47061 * 299.99191 * 1 2 3 34 34 H 1.09008 * 109.46976 * 240.00897 * 2 1 3 35 35 H 1.08995 * 109.47585 * 120.00286 * 2 1 3 36 36 H 1.08998 * 109.46455 * 60.00438 * 3 2 1 37 37 H 1.08995 * 109.47087 * 300.00590 * 3 2 1 38 38 H 1.08998 * 109.88769 * 242.66565 * 5 4 3 39 39 H 1.09003 * 109.88994 * 3.85199 * 5 4 3 40 40 H 1.09005 * 110.70895 * 140.66861 * 6 5 4 41 41 H 1.09000 * 110.70532 * 263.72734 * 6 5 4 42 42 H 1.08999 * 111.09032 * 206.38478 * 7 6 5 43 43 H 1.09003 * 110.94507 * 82.53130 * 7 6 5 44 44 H 0.97001 * 120.00002 * 359.97438 * 12 10 8 45 45 H 1.09000 * 109.47189 * 59.99986 * 13 12 10 46 46 H 1.08998 * 109.47254 * 299.99808 * 13 12 10 47 47 H 0.97000 * 119.99781 * 24.99838 * 16 14 13 48 48 H 0.97000 * 119.99954 * 359.97438 * 20 19 17 49 49 H 1.07999 * 119.99965 * 359.97438 * 26 25 14 50 50 H 1.07998 * 119.99969 * 180.23274 * 27 26 25 51 51 H 1.07999 * 119.99877 * 179.72606 * 28 27 26 52 52 H 1.08004 * 120.00024 * 179.97438 * 29 28 27 53 53 H 1.08011 * 119.99741 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0368 0.9531 -1.2874 6 6 4.9549 2.0562 -1.8543 7 6 5.3440 2.8727 -0.5923 8 6 4.0388 2.8018 0.2391 9 1 3.3279 3.5526 -0.1060 10 6 4.3381 2.9977 1.7030 11 8 4.1080 2.1070 2.4934 12 7 4.8613 4.1625 2.1339 13 6 5.1517 4.3531 3.5571 14 6 5.7350 5.7506 3.7760 15 1 6.6988 5.8249 3.2726 16 7 4.8188 6.7535 3.2274 17 6 5.2967 7.9749 2.8340 18 1 6.3490 8.1991 2.9285 19 6 4.4285 8.9254 2.3146 20 7 3.1461 8.6525 2.1999 21 14 5.0806 10.5914 1.7773 22 1 5.0323 11.5348 2.9231 23 1 6.4839 10.4476 1.3133 24 1 4.2439 11.1163 0.6684 25 6 5.9192 5.9925 5.2520 26 6 4.8398 6.3643 6.0314 27 6 5.0078 6.5816 7.3863 28 6 6.2573 6.4371 7.9597 29 6 7.3377 6.0704 7.1792 30 6 7.1685 5.8477 5.8255 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.8932 -0.5137 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.6766 1.9564 -0.8899 38 1 4.6091 0.0389 -1.1297 39 1 3.2146 0.7640 -1.9777 40 1 5.8390 1.6204 -2.3198 41 1 4.4140 2.6798 -2.5661 42 1 5.5865 3.9033 -0.8513 43 1 6.1708 2.4001 -0.0621 44 1 5.0457 4.8748 1.5017 45 1 5.8723 3.6037 3.8845 46 1 4.2320 4.2487 4.1328 47 1 3.8737 6.5523 3.1428 48 1 2.8076 7.7870 2.4778 49 1 3.8645 6.4819 5.5825 50 1 4.1637 6.8685 7.9959 51 1 6.3895 6.6112 9.0173 52 1 8.3140 5.9578 7.6272 53 1 8.0128 5.5615 5.2157 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267520246.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:22 Heat of formation + Delta-G solvation = -19.440476 kcal Electronic energy + Delta-G solvation = -30723.739898 eV Core-core repulsion = 26787.194689 eV Total energy + Delta-G solvation = -3936.545209 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.31479 -40.32519 -39.20970 -37.49876 -35.57706 -35.31252 -33.73377 -31.75417 -31.68659 -31.04541 -30.82015 -28.55494 -26.49106 -25.57708 -24.57770 -23.39294 -23.08451 -22.90175 -21.60184 -21.24616 -20.80959 -19.44248 -18.43818 -17.90684 -17.49714 -16.87962 -16.67449 -16.50075 -16.15217 -15.90898 -15.71464 -15.56805 -15.46748 -15.03259 -14.85635 -14.31415 -14.27036 -14.13189 -14.02101 -13.87436 -13.70451 -13.66251 -13.43512 -12.83337 -12.75450 -12.71743 -12.66983 -12.50000 -12.29729 -12.14256 -12.07401 -11.88291 -11.82720 -11.77090 -11.70180 -11.57328 -11.28645 -11.03117 -10.78962 -10.09333 -9.74880 -9.59764 -9.32208 -9.13377 -8.33116 -5.29987 0.51859 0.57576 1.60337 1.63922 1.68644 1.82804 2.05881 2.70851 2.93239 3.00197 3.43833 3.50352 3.58960 3.64216 3.88813 3.94819 3.99351 4.04709 4.06445 4.13954 4.15278 4.17947 4.26171 4.28692 4.34000 4.43077 4.49960 4.51715 4.61548 4.68633 4.71429 4.73815 4.76142 4.84581 4.89216 4.91944 4.94901 5.03399 5.12818 5.15881 5.22781 5.23302 5.29663 5.35116 5.42114 5.62937 5.63820 5.66183 5.85007 5.86568 6.08644 6.19835 6.52905 6.57953 7.07276 7.26438 7.96944 8.09343 9.17191 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008705 B = 0.003114 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3215.792347 B = 8990.643278 C =10603.768129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C 0.055 3.945 4 N -0.527 5.527 5 C 0.042 3.958 6 C -0.131 4.131 7 C -0.115 4.115 8 C 0.055 3.945 9 H 0.080 0.920 10 C 0.517 3.483 11 O -0.568 6.568 12 N -0.713 5.713 13 C 0.135 3.865 14 C 0.212 3.788 15 H 0.069 0.931 16 N -0.729 5.729 17 C -0.317 4.317 18 H 0.065 0.935 19 C -0.094 4.094 20 N -0.974 5.974 21 Si 1.122 2.878 22 H -0.295 1.295 23 H -0.271 1.271 24 H -0.296 1.296 25 C -0.102 4.102 26 C -0.113 4.113 27 C -0.136 4.136 28 C -0.129 4.129 29 C -0.124 4.124 30 C -0.127 4.127 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.074 0.926 44 H 0.409 0.591 45 H 0.075 0.925 46 H 0.043 0.957 47 H 0.360 0.640 48 H 0.243 0.757 49 H 0.091 0.909 50 H 0.128 0.872 51 H 0.147 0.853 52 H 0.149 0.851 53 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.963 -13.810 -3.915 15.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.073 4.073 4 N -0.252 5.252 5 C -0.085 4.085 6 C -0.170 4.170 7 C -0.153 4.153 8 C -0.057 4.057 9 H 0.098 0.902 10 C 0.303 3.697 11 O -0.446 6.446 12 N -0.365 5.365 13 C 0.010 3.990 14 C 0.102 3.898 15 H 0.087 0.913 16 N -0.370 5.370 17 C -0.448 4.448 18 H 0.083 0.917 19 C -0.286 4.286 20 N -0.622 5.622 21 Si 0.949 3.051 22 H -0.223 1.223 23 H -0.196 1.196 24 H -0.222 1.222 25 C -0.106 4.106 26 C -0.131 4.131 27 C -0.154 4.154 28 C -0.147 4.147 29 C -0.142 4.142 30 C -0.145 4.145 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.116 0.884 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.092 0.908 44 H 0.245 0.755 45 H 0.093 0.907 46 H 0.062 0.938 47 H 0.193 0.807 48 H 0.054 0.946 49 H 0.109 0.891 50 H 0.146 0.854 51 H 0.164 0.836 52 H 0.167 0.833 53 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.777 -13.269 -3.610 14.558 hybrid contribution -0.653 -0.346 0.200 0.765 sum 4.125 -13.615 -3.410 14.629 Atomic orbital electron populations 1.21721 0.94608 1.02483 1.01795 1.21429 0.96111 0.94938 1.02342 1.22306 0.86685 0.98455 0.99871 1.63035 1.08289 1.20363 1.33468 1.22953 0.98618 0.98732 0.88195 1.22801 1.00762 0.96849 0.96542 1.22705 0.94478 1.02397 0.95735 1.22449 0.99385 0.92423 0.91401 0.90188 1.20911 0.76300 0.81257 0.91204 1.90635 1.53368 1.43014 1.57576 1.45937 1.64519 1.16651 1.09435 1.21353 0.99587 0.96257 0.81803 1.19447 0.94162 0.86898 0.89268 0.91306 1.42485 1.06074 1.13268 1.75191 1.20237 0.94710 0.92921 1.36977 0.91679 1.26859 0.94525 1.06402 1.00779 1.70975 1.14267 1.24109 1.52812 0.82670 0.74733 0.71899 0.75832 1.22268 1.19591 1.22215 1.20857 0.94044 0.98761 0.96903 1.20903 0.98431 0.99454 0.94356 1.21351 0.98776 1.00811 0.94499 1.21410 0.92303 1.00023 1.00987 1.21436 0.99900 0.99356 0.93481 1.21281 0.96383 1.00808 0.96076 0.91988 0.91281 0.93616 0.90726 0.92881 0.93588 0.93649 0.90167 0.90951 0.88406 0.90162 0.88838 0.90758 0.75466 0.90707 0.93841 0.80749 0.94614 0.89090 0.85375 0.83562 0.83299 0.84818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.91 71.98 0.71 -1.90 16 2 C -0.11 -2.30 5.95 30.59 0.18 -2.11 16 3 C 0.05 1.35 4.53 86.31 0.39 1.74 16 4 N -0.53 -13.71 4.34 -864.98 -3.76 -17.47 16 5 C 0.04 0.79 6.20 86.65 0.54 1.32 16 6 C -0.13 -2.10 6.94 31.82 0.22 -1.88 16 7 C -0.11 -2.41 6.46 32.02 0.21 -2.21 16 8 C 0.06 1.50 2.80 44.64 0.13 1.63 16 9 H 0.08 2.18 7.81 -2.39 -0.02 2.16 16 10 C 0.52 17.77 7.20 87.66 0.63 18.40 16 11 O -0.57 -23.65 16.49 -3.04 -0.05 -23.70 16 12 N -0.71 -23.93 5.35 -463.07 -2.48 -26.41 16 13 C 0.14 4.77 5.21 86.38 0.45 5.22 16 14 C 0.21 7.96 2.65 44.24 0.12 8.08 16 15 H 0.07 2.54 7.94 -2.39 -0.02 2.52 16 16 N -0.73 -33.46 3.79 -326.50 -1.24 -34.69 16 17 C -0.32 -16.43 9.92 84.03 0.83 -15.60 16 18 H 0.07 3.35 7.83 -2.91 -0.02 3.32 16 19 C -0.09 -5.13 5.50 84.86 0.47 -4.66 16 20 N -0.97 -58.08 13.70 21.65 0.30 -57.78 16 21 Si 1.12 50.21 29.92 68.60 2.05 52.26 16 22 H -0.30 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 24 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 25 C -0.10 -3.74 4.92 -19.87 -0.10 -3.84 16 26 C -0.11 -4.32 9.33 22.27 0.21 -4.11 16 27 C -0.14 -4.37 10.05 22.27 0.22 -4.15 16 28 C -0.13 -3.48 10.05 22.27 0.22 -3.26 16 29 C -0.12 -3.27 10.05 22.27 0.22 -3.05 16 30 C -0.13 -3.89 9.67 22.27 0.22 -3.67 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 1.31 7.09 -2.38 -0.02 1.29 16 35 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.05 1.37 8.08 -2.39 -0.02 1.36 16 37 H 0.05 0.99 7.98 -2.39 -0.02 0.97 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.07 1.14 6.88 -2.39 -0.02 1.13 16 40 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.07 1.66 8.05 -2.39 -0.02 1.64 16 44 H 0.41 13.59 8.14 -92.71 -0.75 12.84 16 45 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 46 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.36 17.85 6.63 -92.71 -0.61 17.24 16 48 H 0.24 14.55 6.77 -92.71 -0.63 13.92 16 49 H 0.09 3.89 7.71 -2.91 -0.02 3.86 16 50 H 0.13 3.60 8.06 -2.91 -0.02 3.57 16 51 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 52 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 53 H 0.13 3.50 8.04 -2.90 -0.02 3.47 16 Total: -1.00 -68.64 426.79 0.36 -68.27 By element: Atomic # 1 Polarization: 53.89 SS G_CDS: -0.34 Total: 53.55 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 5.87 Total: -14.04 kcal Atomic # 7 Polarization: -129.17 SS G_CDS: -7.17 Total: -136.35 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.05 Total: -23.70 kcal Atomic # 14 Polarization: 50.21 SS G_CDS: 2.05 Total: 52.26 kcal Total: -68.64 0.36 -68.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267520246.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.831 kcal (2) G-P(sol) polarization free energy of solvation -68.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds